Wall clock time and date at job start Wed Apr 1 2020 00:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.34768 * 120.00056 * 275.00296 * 4 2 1 6 6 O 1.21537 * 120.00236 * 359.97438 * 5 4 2 7 7 C 1.47983 * 119.99962 * 179.97438 * 5 4 2 8 8 C 1.39446 * 119.65029 * 179.72735 * 7 5 4 9 9 C 1.38343 * 119.13567 * 179.70492 * 8 7 5 10 10 C 1.39280 * 118.43682 * 0.55511 * 9 8 7 11 11 N 1.39880 * 120.39231 * 179.74671 * 10 9 8 12 12 C 1.37156 * 126.48584 * 179.97438 * 11 10 9 13 13 C 1.34628 * 106.82768 * 179.97438 * 12 11 10 14 14 N 1.34146 * 108.21579 * 0.02562 * 13 12 11 15 15 C 1.30492 * 109.36774 * 359.76026 * 14 13 12 16 16 C 1.39274 * 119.22237 * 359.72733 * 10 9 8 17 17 N 1.31385 * 120.79495 * 359.97438 * 16 10 9 18 18 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 19 19 C 1.53951 * 113.74032 * 158.74104 * 18 2 1 20 20 N 1.47814 * 86.03241 * 222.08256 * 19 18 2 21 21 C 1.36936 * 134.45554 * 204.64600 * 20 19 18 22 22 H 1.08000 * 119.99930 * 179.86546 * 21 20 19 23 23 C 1.38813 * 120.00235 * 359.86773 * 21 20 19 24 24 N 1.31620 * 119.99768 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00507 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47221 * 89.99461 * 25 23 21 27 27 H 1.48495 * 109.47335 * 209.99808 * 25 23 21 28 28 H 1.48510 * 109.46901 * 329.99676 * 25 23 21 29 29 C 1.47582 * 91.05472 * 24.54901 * 20 19 18 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 34 34 H 1.08005 * 120.43093 * 0.02562 * 8 7 5 35 35 H 1.08003 * 120.78293 * 180.27841 * 9 8 7 36 36 H 1.07999 * 126.58380 * 359.92754 * 12 11 10 37 37 H 1.08005 * 125.88540 * 180.02562 * 13 12 11 38 38 H 1.07994 * 125.72248 * 180.23548 * 15 14 13 39 39 H 1.07996 * 119.60353 * 179.97438 * 16 10 9 40 40 H 1.08996 * 112.94085 * 290.33107 * 18 2 1 41 41 H 1.08995 * 113.76589 * 336.34430 * 19 18 2 42 42 H 1.08995 * 113.76867 * 107.74965 * 19 18 2 43 43 H 0.96994 * 120.00624 * 179.97438 * 24 23 21 44 44 H 1.08998 * 113.77067 * 221.15214 * 29 20 19 45 45 H 1.09004 * 113.87049 * 89.76457 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8584 1.1610 2.4116 7 6 2.6399 -0.7161 3.5654 8 6 2.7757 -0.0121 4.7614 9 6 3.2315 -0.6764 5.8860 10 6 3.5496 -2.0278 5.7747 11 7 4.0191 -2.7381 6.8846 12 6 4.3673 -4.0643 6.9164 13 6 4.7628 -4.3333 8.1749 14 7 4.6607 -3.2070 8.8963 15 6 4.2211 -2.2433 8.1342 16 6 3.3943 -2.6638 4.5455 17 7 2.9532 -2.0047 3.4980 18 6 2.0400 -0.7212 -1.2494 19 6 3.4848 -0.3519 -1.6317 20 7 2.9978 -0.3175 -3.0269 21 6 3.5874 -0.4754 -4.2527 22 1 2.9926 -0.4035 -5.1513 23 6 4.9495 -0.7281 -4.3404 24 7 5.6744 -0.8154 -3.2453 25 14 5.7540 -0.9429 -6.0125 26 1 6.2188 0.3763 -6.5113 27 1 6.9137 -1.8622 -5.8894 28 1 4.7689 -1.5137 -6.9660 29 6 1.6213 -0.0470 -2.5685 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 2.5233 1.0369 4.8104 35 1 3.3424 -0.1582 6.8271 36 1 4.3304 -4.7595 6.0907 37 1 5.1034 -5.2908 8.5404 38 1 4.0452 -1.2241 8.4449 39 1 3.6395 -3.7115 4.4521 40 1 1.8528 -1.7947 -1.2264 41 1 3.8046 0.6192 -1.2540 42 1 4.2071 -1.1446 -1.4368 43 1 6.6261 -0.9923 -3.3064 44 1 0.8586 -0.5967 -3.1200 45 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970731044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:23 Heat of formation + Delta-G solvation = 129.302325 kcal Electronic energy + Delta-G solvation = -28119.317466 eV Core-core repulsion = 24140.304842 eV Total energy + Delta-G solvation = -3979.012624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.86725 -40.88821 -39.39289 -38.00800 -35.15400 -34.90237 -32.89900 -32.22100 -31.03865 -30.12497 -29.66510 -27.52738 -25.58737 -24.76003 -24.46335 -23.90828 -22.25347 -21.42129 -21.29773 -20.42321 -19.43960 -19.13582 -17.83244 -17.09741 -16.72654 -16.14831 -15.89910 -15.52339 -15.25401 -15.14128 -14.88799 -14.71719 -14.28760 -14.14574 -13.88575 -13.84411 -13.59436 -13.47180 -13.09557 -13.00048 -12.44768 -12.15887 -11.68486 -11.53655 -11.35372 -11.29626 -10.92946 -10.75218 -10.71707 -10.44518 -10.38964 -10.37451 -10.04036 -9.78445 -9.76628 -9.41632 -9.30963 -8.97958 -8.80511 -8.79260 -6.87282 -5.76259 -3.08546 -0.14866 0.58456 1.60112 2.02743 2.55580 2.66288 3.04650 3.39007 3.43657 3.45721 3.48225 3.72083 3.90616 3.97163 4.13491 4.28213 4.41037 4.45209 4.69522 4.89433 4.99816 5.06691 5.13259 5.22171 5.25952 5.27364 5.38269 5.52729 5.63797 5.66747 5.77685 5.82591 5.93814 6.00975 6.17229 6.21197 6.33663 6.38563 6.55474 6.60771 6.63766 6.76416 7.13245 7.23826 7.36443 7.46115 7.56540 7.62370 7.98502 8.18925 9.04956 9.71333 10.60523 11.40780 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.002171 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.016609 B =12892.750059 C =14269.501560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.090 0.910 4 N -0.692 5.692 5 C 0.569 3.431 6 O -0.535 6.535 7 C 0.079 3.921 8 C -0.082 4.082 9 C -0.097 4.097 10 C 0.100 3.900 11 N -0.410 5.410 12 C -0.051 4.051 13 C -0.019 4.019 14 N -0.482 5.482 15 C 0.191 3.809 16 C 0.097 3.903 17 N -0.427 5.427 18 C -0.147 4.147 19 C 0.171 3.829 20 N -0.613 5.613 21 C -0.222 4.222 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.131 3.869 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.410 0.590 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.183 0.817 37 H 0.178 0.822 38 H 0.211 0.789 39 H 0.170 0.830 40 H 0.089 0.911 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 -4.351 22.374 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.108 0.892 4 N -0.342 5.342 5 C 0.353 3.647 6 O -0.412 6.412 7 C -0.060 4.060 8 C -0.104 4.104 9 C -0.124 4.124 10 C 0.004 3.996 11 N -0.090 5.090 12 C -0.180 4.180 13 C -0.164 4.164 14 N -0.199 5.199 15 C -0.090 4.090 16 C -0.066 4.066 17 N -0.137 5.137 18 C -0.167 4.167 19 C 0.045 3.955 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.246 0.754 34 H 0.179 0.821 35 H 0.169 0.831 36 H 0.200 0.800 37 H 0.195 0.805 38 H 0.227 0.773 39 H 0.187 0.813 40 H 0.107 0.893 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.124 -3.904 22.097 23.543 hybrid contribution 0.677 -0.186 -0.910 1.149 sum -6.447 -4.089 21.187 22.521 Atomic orbital electron populations 1.22134 0.95412 1.01917 1.02197 1.21208 0.93659 0.97644 0.83144 0.89225 1.45969 1.64510 1.14791 1.08914 1.17672 0.78349 0.86072 0.82644 1.90798 1.50902 1.14846 1.84640 1.21442 0.99457 0.90183 0.94923 1.22060 0.95159 1.02381 0.90756 1.21301 0.98976 0.91660 1.00491 1.19101 0.99780 0.92759 0.87982 1.43132 1.47697 1.09417 1.08762 1.22909 1.08468 0.84926 1.01734 1.22436 1.05458 0.98236 0.90299 1.70358 1.17697 0.99604 1.32220 1.25387 1.03114 1.00914 0.79591 1.22621 0.97417 1.00681 0.85872 1.67650 1.07963 1.08118 1.29983 1.23835 1.00971 0.99770 0.92105 1.22296 0.91379 0.98495 0.83285 1.45994 1.03283 1.82583 1.02010 1.19025 0.91434 1.41565 0.82967 0.90263 1.24788 0.96070 1.02428 0.97268 1.69816 1.06067 1.55212 1.25758 0.86125 0.79010 0.77534 0.83125 1.21646 1.21655 1.20618 1.22489 0.89682 0.96615 0.90811 0.92742 0.92605 0.91211 0.75369 0.82086 0.83117 0.79964 0.80533 0.77283 0.81340 0.89262 0.95652 0.90999 0.93689 0.93714 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.31 37.16 0.35 -1.69 16 2 C 0.15 2.24 2.38 -67.93 -0.16 2.07 16 3 H 0.09 1.54 7.41 -51.93 -0.39 1.16 16 4 N -0.69 -9.64 5.07 -54.71 -0.28 -9.91 16 5 C 0.57 8.04 7.77 -12.27 -0.10 7.95 16 6 O -0.54 -8.85 15.98 5.33 0.09 -8.76 16 7 C 0.08 0.90 6.75 -83.01 -0.56 0.34 16 8 C -0.08 -0.74 9.62 -39.09 -0.38 -1.11 16 9 C -0.10 -0.66 9.57 -39.16 -0.37 -1.04 16 10 C 0.10 0.77 6.66 -83.41 -0.56 0.21 16 11 N -0.41 -3.08 2.98 -61.93 -0.18 -3.27 16 12 C -0.05 -0.35 10.86 -16.45 -0.18 -0.53 16 13 C -0.02 -0.15 11.85 -17.82 -0.21 -0.36 16 14 N -0.48 -4.67 11.24 -14.46 -0.16 -4.84 16 15 C 0.19 1.45 11.93 -89.58 -1.07 0.38 16 16 C 0.10 0.81 10.64 -17.36 -0.18 0.62 16 17 N -0.43 -4.57 9.52 -9.66 -0.09 -4.66 16 18 C -0.15 -2.60 3.47 -89.69 -0.31 -2.91 16 19 C 0.17 3.97 7.08 -2.83 -0.02 3.95 16 20 N -0.61 -15.66 3.70 -177.71 -0.66 -16.32 16 21 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -27.45 11.39 55.49 0.63 -26.82 16 25 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.13 2.59 7.64 -2.97 -0.02 2.56 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.86 7.52 -51.93 -0.39 0.47 16 33 H 0.41 5.30 7.92 -40.82 -0.32 4.97 16 34 H 0.16 1.31 7.63 -52.48 -0.40 0.91 16 35 H 0.15 0.55 6.88 -52.48 -0.36 0.19 16 36 H 0.18 0.71 7.16 -52.49 -0.38 0.33 16 37 H 0.18 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.21 0.84 7.12 -52.49 -0.37 0.46 16 39 H 0.17 0.98 6.82 -52.49 -0.36 0.62 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.03 0.62 7.99 -51.93 -0.41 0.21 16 42 H 0.07 1.85 7.17 -51.93 -0.37 1.48 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -35.43 380.97 -9.81 -45.24 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.83 Total: 2.73 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -4.03 Total: 3.68 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -0.74 Total: -65.82 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.43 -9.81 -45.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970731044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.543 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds