Wall clock time and date at job start Wed Apr 1 2020 00:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.34768 * 120.00056 * 275.00296 * 4 2 1 6 6 O 1.21537 * 120.00236 * 359.97438 * 5 4 2 7 7 C 1.47983 * 119.99962 * 179.97438 * 5 4 2 8 8 C 1.39446 * 119.65029 * 179.72735 * 7 5 4 9 9 C 1.38343 * 119.13567 * 179.70492 * 8 7 5 10 10 C 1.39280 * 118.43682 * 0.55511 * 9 8 7 11 11 N 1.39880 * 120.39231 * 179.74671 * 10 9 8 12 12 C 1.37156 * 126.48584 * 179.97438 * 11 10 9 13 13 C 1.34628 * 106.82768 * 179.97438 * 12 11 10 14 14 N 1.34146 * 108.21579 * 0.02562 * 13 12 11 15 15 C 1.30492 * 109.36774 * 359.76026 * 14 13 12 16 16 C 1.39274 * 119.22237 * 359.72733 * 10 9 8 17 17 N 1.31385 * 120.79495 * 359.97438 * 16 10 9 18 18 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 19 19 C 1.53951 * 113.74032 * 158.74104 * 18 2 1 20 20 N 1.47814 * 86.03241 * 222.08256 * 19 18 2 21 21 C 1.36936 * 134.45554 * 204.64600 * 20 19 18 22 22 H 1.08000 * 119.99930 * 179.86546 * 21 20 19 23 23 C 1.38813 * 120.00235 * 359.86773 * 21 20 19 24 24 N 1.31620 * 119.99768 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00507 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47221 * 89.99461 * 25 23 21 27 27 H 1.48495 * 109.47335 * 209.99808 * 25 23 21 28 28 H 1.48510 * 109.46901 * 329.99676 * 25 23 21 29 29 C 1.47582 * 91.05472 * 24.54901 * 20 19 18 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 34 34 H 1.08005 * 120.43093 * 0.02562 * 8 7 5 35 35 H 1.08003 * 120.78293 * 180.27841 * 9 8 7 36 36 H 1.07999 * 126.58380 * 359.92754 * 12 11 10 37 37 H 1.08005 * 125.88540 * 180.02562 * 13 12 11 38 38 H 1.07994 * 125.72248 * 180.23548 * 15 14 13 39 39 H 1.07996 * 119.60353 * 179.97438 * 16 10 9 40 40 H 1.08996 * 112.94085 * 290.33107 * 18 2 1 41 41 H 1.08995 * 113.76589 * 336.34430 * 19 18 2 42 42 H 1.08995 * 113.76867 * 107.74965 * 19 18 2 43 43 H 0.96994 * 120.00624 * 179.97438 * 24 23 21 44 44 H 1.08998 * 113.77067 * 221.15214 * 29 20 19 45 45 H 1.09004 * 113.87049 * 89.76457 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8584 1.1610 2.4116 7 6 2.6399 -0.7161 3.5654 8 6 2.7757 -0.0121 4.7614 9 6 3.2315 -0.6764 5.8860 10 6 3.5496 -2.0278 5.7747 11 7 4.0191 -2.7381 6.8846 12 6 4.3673 -4.0643 6.9164 13 6 4.7628 -4.3333 8.1749 14 7 4.6607 -3.2070 8.8963 15 6 4.2211 -2.2433 8.1342 16 6 3.3943 -2.6638 4.5455 17 7 2.9532 -2.0047 3.4980 18 6 2.0400 -0.7212 -1.2494 19 6 3.4848 -0.3519 -1.6317 20 7 2.9978 -0.3175 -3.0269 21 6 3.5874 -0.4754 -4.2527 22 1 2.9926 -0.4035 -5.1513 23 6 4.9495 -0.7281 -4.3404 24 7 5.6744 -0.8154 -3.2453 25 14 5.7540 -0.9429 -6.0125 26 1 6.2188 0.3763 -6.5113 27 1 6.9137 -1.8622 -5.8894 28 1 4.7689 -1.5137 -6.9660 29 6 1.6213 -0.0470 -2.5685 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 2.5233 1.0369 4.8104 35 1 3.3424 -0.1582 6.8271 36 1 4.3304 -4.7595 6.0907 37 1 5.1034 -5.2908 8.5404 38 1 4.0452 -1.2241 8.4449 39 1 3.6395 -3.7115 4.4521 40 1 1.8528 -1.7947 -1.2264 41 1 3.8046 0.6192 -1.2540 42 1 4.2071 -1.1446 -1.4368 43 1 6.6261 -0.9923 -3.3064 44 1 0.8586 -0.5967 -3.1200 45 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970731044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:22 Heat of formation + Delta-G solvation = 106.680872 kcal Electronic energy + Delta-G solvation = -28120.298406 eV Core-core repulsion = 24140.304842 eV Total energy + Delta-G solvation = -3979.993564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.42488 -41.71311 -40.53570 -39.48846 -36.26649 -35.79031 -34.18927 -33.52581 -32.16219 -30.84826 -30.39958 -29.34476 -26.77062 -26.08490 -25.54396 -25.08397 -23.37788 -22.28205 -22.00711 -21.47498 -20.86440 -19.74374 -18.95517 -18.70439 -17.90660 -17.00650 -16.92403 -16.74433 -16.32442 -16.15588 -15.90291 -15.72777 -15.45727 -15.00705 -14.86492 -14.82769 -14.68565 -14.48339 -14.13559 -14.03436 -13.69589 -13.42539 -13.25961 -13.08836 -12.91566 -12.70880 -12.53288 -12.20553 -12.01842 -11.75124 -11.55303 -11.42868 -11.28551 -11.18566 -11.01456 -10.87616 -10.73574 -10.13209 -9.86472 -9.49449 -8.92244 -7.90671 -5.24298 -0.84482 -0.02472 0.97775 1.44580 1.46284 1.46848 1.55432 1.71826 2.03440 2.08064 2.47057 2.68055 2.97143 3.29873 3.34210 3.36317 3.39278 3.60811 3.71259 3.77646 3.82661 3.93618 4.01803 4.29835 4.40222 4.46204 4.47509 4.57780 4.59156 4.70652 4.73497 4.75149 4.83363 4.86947 5.01479 5.08602 5.10212 5.20157 5.25657 5.34022 5.44996 5.55006 5.65835 5.66121 5.93370 6.06846 6.32782 6.62683 6.91323 6.91998 7.11041 7.60762 8.56583 9.26208 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.002171 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.016609 B =12892.750059 C =14269.501560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.066 0.934 4 N -0.693 5.693 5 C 0.567 3.433 6 O -0.566 6.566 7 C 0.052 3.948 8 C -0.081 4.081 9 C -0.085 4.085 10 C 0.108 3.892 11 N -0.414 5.414 12 C -0.052 4.052 13 C -0.039 4.039 14 N -0.519 5.519 15 C 0.188 3.812 16 C 0.092 3.908 17 N -0.444 5.444 18 C -0.110 4.110 19 C 0.168 3.832 20 N -0.645 5.645 21 C -0.233 4.233 22 H 0.086 0.914 23 C -0.071 4.071 24 N -0.955 5.955 25 Si 0.979 3.021 26 H -0.289 1.289 27 H -0.294 1.294 28 H -0.265 1.265 29 C 0.132 3.868 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.415 0.585 34 H 0.166 0.834 35 H 0.187 0.813 36 H 0.209 0.791 37 H 0.192 0.808 38 H 0.241 0.759 39 H 0.192 0.808 40 H 0.102 0.898 41 H 0.004 0.996 42 H 0.039 0.961 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.431 -5.082 23.152 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.085 0.915 4 N -0.342 5.342 5 C 0.352 3.648 6 O -0.445 6.445 7 C -0.085 4.085 8 C -0.102 4.102 9 C -0.112 4.112 10 C 0.011 3.989 11 N -0.094 5.094 12 C -0.181 4.181 13 C -0.183 4.183 14 N -0.236 5.236 15 C -0.093 4.093 16 C -0.071 4.071 17 N -0.155 5.155 18 C -0.130 4.130 19 C 0.042 3.958 20 N -0.371 5.371 21 C -0.362 4.362 22 H 0.104 0.896 23 C -0.264 4.264 24 N -0.604 5.604 25 Si 0.808 3.192 26 H -0.216 1.216 27 H -0.221 1.221 28 H -0.190 1.190 29 C 0.006 3.994 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.252 0.748 34 H 0.184 0.816 35 H 0.204 0.796 36 H 0.226 0.774 37 H 0.209 0.791 38 H 0.257 0.743 39 H 0.209 0.791 40 H 0.120 0.880 41 H 0.022 0.978 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.343 -4.651 22.881 24.794 hybrid contribution 1.055 0.018 -1.037 1.480 sum -7.288 -4.633 21.844 23.489 Atomic orbital electron populations 1.22051 0.92929 1.03129 1.02608 1.20957 0.95368 0.95960 0.82530 0.91550 1.45909 1.64669 1.14963 1.08681 1.18077 0.77565 0.85811 0.83306 1.90767 1.52333 1.16144 1.85289 1.21124 1.01915 0.90929 0.94568 1.22148 0.94960 1.02629 0.90511 1.21634 0.97175 0.91341 1.01094 1.19163 0.98829 0.93074 0.87796 1.43214 1.47809 1.09714 1.08673 1.23382 1.07420 0.85046 1.02214 1.22825 1.05965 0.98645 0.90828 1.70346 1.19052 1.00741 1.33492 1.26037 1.02061 1.01852 0.79303 1.22997 0.96837 1.01610 0.85632 1.67568 1.08764 1.07946 1.31217 1.23447 0.96305 1.00496 0.92768 1.22167 0.93991 0.96401 0.83211 1.46431 1.05925 1.82854 1.01909 1.19465 0.91931 1.40346 0.84435 0.89643 1.25665 0.96837 1.03061 1.00841 1.70020 1.05796 1.56809 1.27821 0.85061 0.77892 0.77149 0.79140 1.21603 1.22068 1.18968 1.22685 0.87598 0.97666 0.91403 0.92796 0.90953 0.90345 0.74770 0.81608 0.79560 0.77395 0.79086 0.74324 0.79098 0.87978 0.97802 0.94230 0.94394 0.91611 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.31 71.98 0.67 -2.89 16 2 C 0.16 4.69 2.38 44.99 0.11 4.80 16 3 H 0.07 2.33 7.41 -2.39 -0.02 2.31 16 4 N -0.69 -19.29 5.07 -445.28 -2.26 -21.54 16 5 C 0.57 16.19 7.77 86.83 0.67 16.86 16 6 O -0.57 -19.06 15.98 -3.83 -0.06 -19.12 16 7 C 0.05 1.18 6.75 41.88 0.28 1.46 16 8 C -0.08 -1.35 9.62 22.59 0.22 -1.13 16 9 C -0.09 -0.95 9.57 22.55 0.22 -0.73 16 10 C 0.11 1.40 6.66 38.36 0.26 1.65 16 11 N -0.41 -5.20 2.98 -349.84 -1.04 -6.25 16 12 C -0.05 -0.60 10.86 83.03 0.90 0.30 16 13 C -0.04 -0.55 11.85 83.51 0.99 0.44 16 14 N -0.52 -9.32 11.24 -199.68 -2.25 -11.56 16 15 C 0.19 2.41 11.93 179.99 2.15 4.56 16 16 C 0.09 1.37 10.64 85.01 0.90 2.28 16 17 N -0.44 -9.14 9.52 -184.47 -1.76 -10.90 16 18 C -0.11 -3.86 3.47 -10.13 -0.04 -3.90 16 19 C 0.17 8.07 7.08 86.44 0.61 8.68 16 20 N -0.64 -33.27 3.70 -716.14 -2.65 -35.92 16 21 C -0.23 -13.22 10.70 84.03 0.90 -12.32 16 22 H 0.09 4.59 7.83 -2.91 -0.02 4.56 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 24 N -0.96 -58.70 11.39 21.65 0.25 -58.46 16 25 Si 0.98 46.19 29.55 68.60 2.03 48.21 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 C 0.13 5.06 7.64 86.49 0.66 5.72 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.74 7.52 -2.38 -0.02 1.72 16 33 H 0.42 10.66 7.92 -92.71 -0.73 9.92 16 34 H 0.17 2.54 7.63 -2.91 -0.02 2.52 16 35 H 0.19 0.63 6.88 -2.91 -0.02 0.61 16 36 H 0.21 1.04 7.16 -2.91 -0.02 1.02 16 37 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.24 1.13 7.12 -2.91 -0.02 1.11 16 39 H 0.19 1.76 6.82 -2.91 -0.02 1.74 16 40 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.00 0.21 7.99 -2.39 -0.02 0.20 16 42 H 0.04 2.14 7.17 -2.39 -0.02 2.12 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 Total: -1.00 -79.20 380.97 2.53 -76.67 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.30 Total: 16.75 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 9.97 Total: 22.12 kcal Atomic # 7 Polarization: -134.92 SS G_CDS: -9.71 Total: -144.63 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.06 Total: -19.12 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -79.20 2.53 -76.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970731044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.350 kcal (2) G-P(sol) polarization free energy of solvation -79.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds