Wall clock time and date at job start Wed Apr 1 2020 00:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21537 * 119.99878 * 0.02562 * 5 4 2 7 7 C 1.47974 * 119.99788 * 180.02562 * 5 4 2 8 8 C 1.39448 * 119.64958 * 180.02562 * 7 5 4 9 9 C 1.38348 * 119.13731 * 180.02562 * 8 7 5 10 10 C 1.39284 * 118.43751 * 359.97438 * 9 8 7 11 11 N 1.39874 * 120.39005 * 180.02562 * 10 9 8 12 12 C 1.37155 * 126.47980 * 179.97438 * 11 10 9 13 13 C 1.34633 * 106.82840 * 180.02562 * 12 11 10 14 14 N 1.34160 * 108.20968 * 359.97438 * 13 12 11 15 15 C 1.30487 * 109.36452 * 359.72815 * 14 13 12 16 16 C 1.39271 * 119.21785 * 0.02562 * 10 9 8 17 17 N 1.31387 * 120.80266 * 359.71815 * 16 10 9 18 18 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 19 19 C 1.53504 * 114.20785 * 300.00220 * 18 2 1 20 20 N 1.47069 * 87.98363 * 220.34571 * 19 18 2 21 21 C 1.36941 * 136.05552 * 207.07801 * 20 19 18 22 22 H 1.08000 * 119.99396 * 7.56018 * 21 20 19 23 23 C 1.38806 * 119.99993 * 187.55101 * 21 20 19 24 24 N 1.31621 * 119.99759 * 174.37714 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 354.38427 * 23 21 20 26 26 H 1.48501 * 109.46963 * 174.94900 * 25 23 21 27 27 H 1.48498 * 109.47184 * 294.94894 * 25 23 21 28 28 H 1.48507 * 109.47082 * 54.95224 * 25 23 21 29 29 C 1.47064 * 87.88742 * 27.34488 * 20 19 18 30 30 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 31 31 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 32 32 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 34 34 H 1.07997 * 120.42908 * 359.97138 * 8 7 5 35 35 H 1.08001 * 120.77578 * 180.02562 * 9 8 7 36 36 H 1.08000 * 126.59179 * 0.02562 * 12 11 10 37 37 H 1.07996 * 125.89623 * 180.02562 * 13 12 11 38 38 H 1.08002 * 125.71580 * 180.29695 * 15 14 13 39 39 H 1.08005 * 119.60080 * 180.02562 * 16 10 9 40 40 H 1.09002 * 113.41395 * 73.19962 * 18 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 19 18 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 19 18 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 24 23 21 44 44 H 1.08993 * 113.47012 * 87.43421 * 29 20 19 45 45 H 1.09000 * 113.46758 * 217.87997 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1610 -2.4116 7 6 2.6399 -0.7161 -3.5654 8 6 2.7707 -0.0133 -4.7627 9 6 3.2319 -0.6762 -5.8860 10 6 3.5496 -2.0278 -5.7748 11 7 4.0199 -2.7377 -6.8844 12 6 4.3687 -4.0638 -6.9160 13 6 4.7649 -4.3327 -8.1743 14 7 4.6626 -3.2063 -8.8959 15 6 4.2118 -2.2456 -8.1366 16 6 3.3935 -2.6639 -4.5457 17 7 2.9576 -2.0035 -3.4969 18 6 2.0401 -0.7212 1.2493 19 6 1.5899 -0.0845 2.5715 20 7 2.9390 -0.3444 3.0960 21 6 3.4927 -0.5600 4.3298 22 1 2.8558 -0.6814 5.1935 23 6 4.8722 -0.6227 4.4701 24 7 5.4081 -0.7189 5.6684 25 14 5.9681 -0.5704 2.9583 26 1 7.3914 -0.5289 3.3799 27 1 5.7314 -1.7821 2.1331 28 1 5.6528 0.6416 2.1600 29 6 3.4330 -0.2640 1.7131 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 2.2491 -1.6318 -1.1525 34 1 2.5144 1.0347 -4.8126 35 1 3.3437 -0.1576 -6.8268 36 1 4.3325 -4.7589 -6.0902 37 1 5.1054 -5.2901 -8.5400 38 1 4.0253 -1.2290 -8.4500 39 1 3.6384 -3.7117 -4.4524 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970731047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:26 Heat of formation + Delta-G solvation = 137.595535 kcal Electronic energy + Delta-G solvation = -28245.896490 eV Core-core repulsion = 24267.243486 eV Total energy + Delta-G solvation = -3978.653003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.94548 -41.01346 -39.64679 -38.49335 -35.26509 -35.15572 -33.00560 -32.45534 -31.27220 -30.24215 -29.81920 -27.77487 -25.79512 -25.21564 -24.60108 -23.82361 -22.21411 -21.50174 -21.23700 -20.57542 -19.64851 -19.25329 -18.09884 -17.49997 -17.18340 -16.24458 -16.12475 -15.66727 -15.37870 -15.32326 -15.25321 -14.86363 -14.36636 -14.26184 -14.13150 -13.82545 -13.75958 -13.62504 -13.20624 -13.17706 -12.95760 -12.35823 -11.93811 -11.86340 -11.64356 -11.53807 -10.97315 -10.82353 -10.69742 -10.57512 -10.48009 -10.37726 -10.29684 -9.98850 -9.41223 -9.29678 -9.14927 -9.05218 -8.92665 -8.91216 -7.17711 -6.30432 -3.24536 -0.25551 0.47782 1.51291 1.94398 2.43826 2.58565 2.88484 3.35226 3.39403 3.43766 3.60010 3.63719 3.81062 3.87232 4.05753 4.19572 4.29680 4.56880 4.58549 4.68181 4.82023 4.86528 4.91242 5.02797 5.06272 5.14425 5.26887 5.39832 5.45983 5.53070 5.58427 5.71352 5.73032 5.82930 5.96787 6.10163 6.10787 6.21059 6.24436 6.27065 6.36329 6.49507 6.53643 6.88876 7.00470 7.10834 7.39222 7.44969 8.02208 8.22522 8.96505 9.48860 10.35406 11.19476 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.002354 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.707694 B =11891.973291 C =13119.439803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.092 0.908 4 N -0.697 5.697 5 C 0.570 3.430 6 O -0.532 6.532 7 C 0.076 3.924 8 C -0.081 4.081 9 C -0.097 4.097 10 C 0.103 3.897 11 N -0.411 5.411 12 C -0.052 4.052 13 C -0.018 4.018 14 N -0.481 5.481 15 C 0.191 3.809 16 C 0.096 3.904 17 N -0.428 5.428 18 C -0.140 4.140 19 C 0.135 3.865 20 N -0.629 5.629 21 C -0.303 4.303 22 H 0.083 0.917 23 C -0.025 4.025 24 N -0.934 5.934 25 Si 1.070 2.930 26 H -0.295 1.295 27 H -0.293 1.293 28 H -0.287 1.287 29 C 0.102 3.898 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.411 0.589 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.183 0.817 37 H 0.178 0.822 38 H 0.211 0.789 39 H 0.170 0.830 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.040 0.960 43 H 0.261 0.739 44 H 0.045 0.955 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.276 -4.133 -28.298 29.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.110 0.890 4 N -0.347 5.347 5 C 0.354 3.646 6 O -0.409 6.409 7 C -0.063 4.063 8 C -0.102 4.102 9 C -0.124 4.124 10 C 0.006 3.994 11 N -0.091 5.091 12 C -0.181 4.181 13 C -0.163 4.163 14 N -0.198 5.198 15 C -0.090 4.090 16 C -0.067 4.067 17 N -0.138 5.138 18 C -0.160 4.160 19 C 0.008 3.992 20 N -0.357 5.357 21 C -0.429 4.429 22 H 0.101 0.899 23 C -0.224 4.224 24 N -0.576 5.576 25 Si 0.903 3.097 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.214 1.214 29 C -0.023 4.023 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.180 0.820 35 H 0.170 0.830 36 H 0.200 0.800 37 H 0.195 0.805 38 H 0.227 0.773 39 H 0.187 0.813 40 H 0.117 0.883 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.710 -3.753 -28.479 29.287 hybrid contribution -1.516 -0.037 0.566 1.618 sum -7.225 -3.789 -27.913 29.081 Atomic orbital electron populations 1.22123 0.94899 1.02169 1.02464 1.21131 0.94138 0.97526 0.82713 0.88953 1.45993 1.64877 1.14822 1.08978 1.17682 0.78281 0.86078 0.82602 1.90808 1.50650 1.14814 1.84590 1.21399 0.99748 0.90258 0.94880 1.22061 0.95037 1.02388 0.90737 1.21316 0.98894 0.91680 1.00539 1.19103 0.99525 0.92740 0.88006 1.43135 1.47822 1.09527 1.08628 1.22910 1.08579 0.84834 1.01749 1.22452 1.05348 0.98197 0.90316 1.70369 1.17458 0.99675 1.32286 1.25399 1.03024 1.01010 0.79517 1.22621 0.97497 1.00673 0.85862 1.67640 1.08031 1.08058 1.30119 1.23576 0.99085 1.00404 0.92928 1.22257 0.90090 0.97154 0.89735 1.45963 1.04063 1.83714 1.01912 1.20154 0.92130 1.47608 0.83047 0.89922 1.25713 0.94247 0.99300 1.03150 1.70912 1.37298 1.52231 0.97183 0.83717 0.75739 0.76200 0.74074 1.22240 1.22137 1.21442 1.22836 0.94777 0.98485 0.86201 0.91030 0.92484 0.92417 0.75337 0.82049 0.83040 0.79954 0.80489 0.77252 0.81293 0.88251 0.93449 0.94264 0.92933 0.93757 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.29 37.16 0.35 -1.51 16 2 C 0.15 2.04 2.47 -67.93 -0.17 1.87 16 3 H 0.09 1.42 7.32 -51.93 -0.38 1.04 16 4 N -0.70 -8.69 5.07 -54.71 -0.28 -8.96 16 5 C 0.57 7.30 7.77 -12.27 -0.10 7.20 16 6 O -0.53 -8.10 15.98 5.33 0.09 -8.01 16 7 C 0.08 0.78 6.75 -83.01 -0.56 0.22 16 8 C -0.08 -0.64 9.62 -39.09 -0.38 -1.02 16 9 C -0.10 -0.58 9.57 -39.15 -0.37 -0.95 16 10 C 0.10 0.70 6.66 -83.41 -0.56 0.14 16 11 N -0.41 -2.78 2.98 -61.93 -0.18 -2.97 16 12 C -0.05 -0.32 10.86 -16.45 -0.18 -0.50 16 13 C -0.02 -0.13 11.85 -17.81 -0.21 -0.34 16 14 N -0.48 -4.39 11.24 -14.46 -0.16 -4.55 16 15 C 0.19 1.33 11.93 -89.60 -1.07 0.26 16 16 C 0.10 0.71 10.64 -17.36 -0.18 0.52 16 17 N -0.43 -4.10 9.52 -9.66 -0.09 -4.19 16 18 C -0.14 -2.26 3.67 -89.96 -0.33 -2.59 16 19 C 0.13 2.54 7.33 -8.50 -0.06 2.48 16 20 N -0.63 -15.38 3.69 -184.57 -0.68 -16.06 16 21 C -0.30 -8.78 11.08 -15.06 -0.17 -8.94 16 22 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 23 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 24 N -0.93 -29.68 13.70 55.49 0.76 -28.92 16 25 Si 1.07 27.13 25.16 -169.99 -4.28 22.85 16 26 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 27 H -0.29 -6.98 6.51 56.52 0.37 -6.61 16 28 H -0.29 -6.88 6.21 56.52 0.35 -6.53 16 29 C 0.10 2.14 5.27 -8.36 -0.04 2.10 16 30 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.41 4.64 7.92 -40.82 -0.32 4.32 16 34 H 0.16 1.15 7.63 -52.49 -0.40 0.75 16 35 H 0.15 0.43 6.88 -52.49 -0.36 0.07 16 36 H 0.18 0.58 7.16 -52.49 -0.38 0.20 16 37 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.21 0.70 7.12 -52.49 -0.37 0.32 16 39 H 0.17 0.82 6.82 -52.48 -0.36 0.46 16 40 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 44 H 0.04 0.94 7.44 -51.93 -0.39 0.55 16 45 H 0.05 1.12 4.73 -51.93 -0.25 0.87 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -36.72 373.46 -9.12 -45.84 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.79 Total: 1.26 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -4.13 Total: -1.91 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.64 Total: -65.65 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 14 Polarization: 27.13 SS G_CDS: -4.28 Total: 22.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.72 -9.12 -45.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970731047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.433 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds