Wall clock time and date at job start Wed Apr 1 2020 00:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21537 * 119.99878 * 0.02562 * 5 4 2 7 7 C 1.47974 * 119.99788 * 180.02562 * 5 4 2 8 8 C 1.39448 * 119.64958 * 180.02562 * 7 5 4 9 9 C 1.38348 * 119.13731 * 180.02562 * 8 7 5 10 10 C 1.39284 * 118.43751 * 359.97438 * 9 8 7 11 11 N 1.39874 * 120.39005 * 180.02562 * 10 9 8 12 12 C 1.37155 * 126.47980 * 179.97438 * 11 10 9 13 13 C 1.34633 * 106.82840 * 180.02562 * 12 11 10 14 14 N 1.34160 * 108.20968 * 359.97438 * 13 12 11 15 15 C 1.30487 * 109.36452 * 359.72815 * 14 13 12 16 16 C 1.39271 * 119.21785 * 0.02562 * 10 9 8 17 17 N 1.31387 * 120.80266 * 359.71815 * 16 10 9 18 18 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 19 19 C 1.53504 * 114.20785 * 300.00220 * 18 2 1 20 20 N 1.47069 * 87.98363 * 220.34571 * 19 18 2 21 21 C 1.36941 * 136.05552 * 207.07801 * 20 19 18 22 22 H 1.08000 * 119.99396 * 7.56018 * 21 20 19 23 23 C 1.38806 * 119.99993 * 187.55101 * 21 20 19 24 24 N 1.31621 * 119.99759 * 174.37714 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 354.38427 * 23 21 20 26 26 H 1.48501 * 109.46963 * 174.94900 * 25 23 21 27 27 H 1.48498 * 109.47184 * 294.94894 * 25 23 21 28 28 H 1.48507 * 109.47082 * 54.95224 * 25 23 21 29 29 C 1.47064 * 87.88742 * 27.34488 * 20 19 18 30 30 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 31 31 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 32 32 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 34 34 H 1.07997 * 120.42908 * 359.97138 * 8 7 5 35 35 H 1.08001 * 120.77578 * 180.02562 * 9 8 7 36 36 H 1.08000 * 126.59179 * 0.02562 * 12 11 10 37 37 H 1.07996 * 125.89623 * 180.02562 * 13 12 11 38 38 H 1.08002 * 125.71580 * 180.29695 * 15 14 13 39 39 H 1.08005 * 119.60080 * 180.02562 * 16 10 9 40 40 H 1.09002 * 113.41395 * 73.19962 * 18 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 19 18 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 19 18 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 24 23 21 44 44 H 1.08993 * 113.47012 * 87.43421 * 29 20 19 45 45 H 1.09000 * 113.46758 * 217.87997 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1610 -2.4116 7 6 2.6399 -0.7161 -3.5654 8 6 2.7707 -0.0133 -4.7627 9 6 3.2319 -0.6762 -5.8860 10 6 3.5496 -2.0278 -5.7748 11 7 4.0199 -2.7377 -6.8844 12 6 4.3687 -4.0638 -6.9160 13 6 4.7649 -4.3327 -8.1743 14 7 4.6626 -3.2063 -8.8959 15 6 4.2118 -2.2456 -8.1366 16 6 3.3935 -2.6639 -4.5457 17 7 2.9576 -2.0035 -3.4969 18 6 2.0401 -0.7212 1.2493 19 6 1.5899 -0.0845 2.5715 20 7 2.9390 -0.3444 3.0960 21 6 3.4927 -0.5600 4.3298 22 1 2.8558 -0.6814 5.1935 23 6 4.8722 -0.6227 4.4701 24 7 5.4081 -0.7189 5.6684 25 14 5.9681 -0.5704 2.9583 26 1 7.3914 -0.5289 3.3799 27 1 5.7314 -1.7821 2.1331 28 1 5.6528 0.6416 2.1600 29 6 3.4330 -0.2640 1.7131 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 2.2491 -1.6318 -1.1525 34 1 2.5144 1.0347 -4.8126 35 1 3.3437 -0.1576 -6.8268 36 1 4.3325 -4.7589 -6.0902 37 1 5.1054 -5.2901 -8.5400 38 1 4.0253 -1.2290 -8.4500 39 1 3.6384 -3.7117 -4.4524 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970731047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:25 Heat of formation + Delta-G solvation = 112.282053 kcal Electronic energy + Delta-G solvation = -28246.994165 eV Core-core repulsion = 24267.243486 eV Total energy + Delta-G solvation = -3979.750678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.42660 -41.74452 -40.77344 -39.74617 -36.39418 -35.79819 -34.54592 -33.53547 -32.32116 -30.90539 -30.42791 -29.48078 -27.12900 -26.20002 -25.33674 -25.03111 -23.23772 -22.25258 -22.01224 -21.51304 -21.08726 -19.75875 -19.56632 -19.02238 -17.94750 -17.30991 -16.92603 -16.74391 -16.37394 -16.21717 -15.94773 -15.84913 -15.51136 -15.17703 -15.09153 -14.83645 -14.82956 -14.59998 -14.29981 -14.07832 -13.71516 -13.67366 -13.30683 -13.23995 -13.12989 -12.55028 -12.37572 -12.20279 -12.13886 -11.73375 -11.49827 -11.32358 -11.22819 -11.10679 -11.01259 -10.86948 -10.75306 -10.16682 -9.87326 -9.49672 -9.24165 -8.62921 -5.49081 -0.84856 -0.02849 0.97272 1.35090 1.44827 1.46318 1.63882 1.70956 1.99276 2.07894 2.50946 2.67396 2.95316 2.97467 3.16515 3.34243 3.36429 3.45365 3.63787 3.73958 3.81306 3.84324 4.00954 4.19323 4.36403 4.40417 4.43612 4.46389 4.57138 4.58035 4.65291 4.67663 4.70777 4.73570 4.80922 4.86815 5.02448 5.09483 5.18547 5.20044 5.29730 5.38496 5.51835 5.66023 5.93673 6.06732 6.30840 6.61002 6.68483 6.92097 7.09218 7.31025 8.26111 8.88639 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.002354 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.707694 B =11891.973291 C =13119.439803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 H 0.076 0.924 4 N -0.695 5.695 5 C 0.569 3.431 6 O -0.563 6.563 7 C 0.052 3.948 8 C -0.081 4.081 9 C -0.086 4.086 10 C 0.108 3.892 11 N -0.414 5.414 12 C -0.051 4.051 13 C -0.040 4.040 14 N -0.520 5.520 15 C 0.188 3.812 16 C 0.093 3.907 17 N -0.443 5.443 18 C -0.104 4.104 19 C 0.132 3.868 20 N -0.662 5.662 21 C -0.288 4.288 22 H 0.053 0.947 23 C -0.087 4.087 24 N -0.971 5.971 25 Si 1.108 2.892 26 H -0.305 1.305 27 H -0.268 1.268 28 H -0.269 1.269 29 C 0.093 3.907 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.417 0.583 34 H 0.166 0.834 35 H 0.185 0.815 36 H 0.210 0.790 37 H 0.191 0.809 38 H 0.240 0.760 39 H 0.193 0.807 40 H 0.115 0.885 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.247 0.753 44 H 0.045 0.955 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.008 -4.702 -31.575 32.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 H 0.094 0.906 4 N -0.345 5.345 5 C 0.355 3.645 6 O -0.442 6.442 7 C -0.086 4.086 8 C -0.102 4.102 9 C -0.113 4.113 10 C 0.011 3.989 11 N -0.094 5.094 12 C -0.179 4.179 13 C -0.184 4.184 14 N -0.237 5.237 15 C -0.093 4.093 16 C -0.070 4.070 17 N -0.154 5.154 18 C -0.124 4.124 19 C 0.006 3.994 20 N -0.391 5.391 21 C -0.416 4.416 22 H 0.071 0.929 23 C -0.279 4.279 24 N -0.616 5.616 25 Si 0.935 3.065 26 H -0.233 1.233 27 H -0.195 1.195 28 H -0.194 1.194 29 C -0.032 4.032 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.254 0.746 34 H 0.184 0.816 35 H 0.203 0.797 36 H 0.227 0.773 37 H 0.208 0.792 38 H 0.256 0.744 39 H 0.209 0.791 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.498 -4.342 -31.798 32.744 hybrid contribution -1.377 0.115 1.513 2.049 sum -7.875 -4.226 -30.285 31.576 Atomic orbital electron populations 1.22060 0.93034 1.03201 1.02664 1.20896 0.95420 0.96262 0.82114 0.90556 1.45911 1.64936 1.15066 1.08621 1.18036 0.77518 0.85787 0.83210 1.90784 1.52054 1.16139 1.85197 1.21115 1.01949 0.90960 0.94547 1.22148 0.94879 1.02632 0.90534 1.21636 0.97179 0.91383 1.01148 1.19177 0.98779 0.93062 0.87833 1.43215 1.47866 1.09795 1.08562 1.23381 1.07408 0.84981 1.02172 1.22830 1.06024 0.98572 0.90937 1.70350 1.18877 1.00846 1.33638 1.26030 1.02028 1.01898 0.79308 1.22993 0.96867 1.01591 0.85584 1.67572 1.08753 1.07836 1.31200 1.23258 0.95141 1.01186 0.92829 1.22486 0.87925 0.98290 0.90698 1.46105 1.07043 1.84179 1.01750 1.20042 0.91937 1.45237 0.84399 0.92904 1.27001 0.96249 0.99838 1.04766 1.71008 1.37401 1.55604 0.97637 0.83258 0.73517 0.77985 0.71761 1.23284 1.19468 1.19426 1.23030 0.97294 0.98534 0.84347 0.90545 0.92601 0.90966 0.74551 0.81614 0.79734 0.77292 0.79175 0.74354 0.79064 0.86714 0.92438 0.92938 0.94426 0.93740 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.29 71.98 0.67 -2.47 16 2 C 0.16 3.96 2.47 44.99 0.11 4.07 16 3 H 0.08 2.22 7.32 -2.39 -0.02 2.20 16 4 N -0.70 -15.89 5.07 -445.28 -2.26 -18.14 16 5 C 0.57 13.73 7.77 86.82 0.67 14.40 16 6 O -0.56 -16.57 15.98 -3.83 -0.06 -16.64 16 7 C 0.05 0.97 6.75 41.87 0.28 1.26 16 8 C -0.08 -1.09 9.62 22.59 0.22 -0.88 16 9 C -0.09 -0.74 9.57 22.55 0.22 -0.53 16 10 C 0.11 1.13 6.66 38.36 0.26 1.38 16 11 N -0.41 -4.37 2.98 -349.85 -1.04 -5.41 16 12 C -0.05 -0.49 10.86 83.03 0.90 0.41 16 13 C -0.04 -0.51 11.85 83.51 0.99 0.48 16 14 N -0.52 -8.61 11.24 -199.67 -2.25 -10.85 16 15 C 0.19 2.10 11.93 179.99 2.15 4.25 16 16 C 0.09 1.09 10.64 85.01 0.90 2.00 16 17 N -0.44 -7.45 9.52 -184.47 -1.76 -9.21 16 18 C -0.10 -3.12 3.67 -10.37 -0.04 -3.15 16 19 C 0.13 4.71 7.33 83.18 0.61 5.32 16 20 N -0.66 -31.85 3.69 -737.86 -2.72 -34.57 16 21 C -0.29 -16.96 11.08 84.03 0.93 -16.03 16 22 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 23 C -0.09 -5.28 5.50 84.86 0.47 -4.81 16 24 N -0.97 -63.66 13.70 21.65 0.30 -63.36 16 25 Si 1.11 54.70 25.16 68.60 1.73 56.43 16 26 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 27 H -0.27 -12.00 6.51 99.48 0.65 -11.35 16 28 H -0.27 -12.25 6.21 99.48 0.62 -11.64 16 29 C 0.09 3.69 5.27 83.27 0.44 4.13 16 30 H 0.08 1.51 7.48 -2.39 -0.02 1.50 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.42 8.42 7.92 -92.71 -0.73 7.68 16 34 H 0.17 2.05 7.63 -2.91 -0.02 2.03 16 35 H 0.19 0.24 6.88 -2.91 -0.02 0.22 16 36 H 0.21 0.61 7.16 -2.91 -0.02 0.59 16 37 H 0.19 1.60 8.06 -2.91 -0.02 1.57 16 38 H 0.24 0.75 7.12 -2.91 -0.02 0.73 16 39 H 0.19 1.20 6.82 -2.91 -0.02 1.18 16 40 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 43 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 44 H 0.04 1.80 7.44 -2.39 -0.02 1.78 16 45 H 0.05 1.93 4.73 -2.39 -0.01 1.92 16 Total: -1.00 -82.06 373.46 1.83 -80.23 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.12 Total: 11.69 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 9.78 Total: 9.84 kcal Atomic # 7 Polarization: -131.82 SS G_CDS: -9.73 Total: -141.55 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.06 Total: -16.64 kcal Atomic # 14 Polarization: 54.70 SS G_CDS: 1.73 Total: 56.43 kcal Total: -82.06 1.83 -80.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970731047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.509 kcal (2) G-P(sol) polarization free energy of solvation -82.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds