Wall clock time and date at job start Wed Apr 1 2020 00:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 N 1.46500 * 109.46866 * 120.00530 * 2 1 3 5 5 C 1.34768 * 119.99743 * 274.99573 * 4 2 1 6 6 O 1.21565 * 120.00249 * 0.02562 * 5 4 2 7 7 C 1.47763 * 119.99895 * 180.02562 * 5 4 2 8 8 C 1.40601 * 126.04603 * 180.02562 * 7 5 4 9 9 N 1.31252 * 106.62610 * 179.97438 * 8 7 5 10 10 N 1.40113 * 107.17483 * 0.02562 * 9 8 7 11 11 C 1.40138 * 125.56475 * 179.97438 * 10 9 8 12 12 C 1.38860 * 120.07077 * 179.74673 * 11 10 9 13 13 C 1.38109 * 119.93221 * 179.69632 * 12 11 10 14 14 C 1.38281 * 120.07088 * 0.58018 * 13 12 11 15 15 C 1.38290 * 120.13590 * 359.71624 * 14 13 12 16 16 C 1.38106 * 120.06672 * 359.97438 * 15 14 13 17 17 N 1.28708 * 108.86631 * 359.76083 * 10 9 8 18 18 C 1.53000 * 109.46982 * 240.00251 * 2 1 3 19 19 C 1.53491 * 114.20581 * 175.13701 * 18 2 1 20 20 N 1.47068 * 87.98931 * 220.34690 * 19 18 2 21 21 C 1.36939 * 136.05910 * 207.08893 * 20 19 18 22 22 H 1.07998 * 120.00182 * 7.79505 * 21 20 19 23 23 C 1.38813 * 119.99786 * 187.79929 * 21 20 19 24 24 N 1.31621 * 119.99915 * 195.16074 * 23 21 20 25 25 Si 1.86797 * 120.00091 * 15.16174 * 23 21 20 26 26 H 1.48505 * 109.47500 * 270.00100 * 25 23 21 27 27 H 1.48507 * 109.47318 * 30.00091 * 25 23 21 28 28 H 1.48506 * 109.47272 * 149.99672 * 25 23 21 29 29 C 1.47064 * 87.88132 * 27.34445 * 20 19 18 30 30 H 1.08999 * 109.47241 * 304.83623 * 1 2 3 31 31 H 1.09000 * 109.47347 * 64.83240 * 1 2 3 32 32 H 1.09001 * 109.47388 * 184.83581 * 1 2 3 33 33 H 0.96994 * 119.99876 * 95.00252 * 4 2 1 34 34 H 1.07994 * 126.68970 * 359.95533 * 8 7 5 35 35 H 1.08004 * 120.03183 * 359.97438 * 12 11 10 36 36 H 1.08003 * 119.96363 * 180.31779 * 13 12 11 37 37 H 1.07999 * 119.93788 * 179.69711 * 14 13 12 38 38 H 1.08001 * 119.96327 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.03790 * 180.02562 * 16 15 14 40 40 H 1.09004 * 113.41670 * 308.34718 * 18 2 1 41 41 H 1.09006 * 113.46406 * 105.56897 * 19 18 2 42 42 H 1.09000 * 113.52637 * 335.13768 * 19 18 2 43 43 H 0.96996 * 119.99969 * 354.93710 * 24 23 21 44 44 H 1.08997 * 113.47035 * 87.43951 * 29 20 19 45 45 H 1.09006 * 113.46815 * 217.87607 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0185 2.3570 6 8 1.8576 1.1610 2.4118 7 6 2.6400 -0.7150 3.5634 8 6 2.8220 -0.1409 4.8339 9 7 3.2706 -1.0946 5.6161 10 7 3.3684 -2.2560 4.8384 11 6 3.8089 -3.5064 5.2925 12 6 3.8557 -4.5863 4.4209 13 6 4.2963 -5.8158 4.8699 14 6 4.6793 -5.9750 6.1890 15 6 4.6281 -4.9030 7.0611 16 6 4.1945 -3.6695 6.6166 17 7 2.9832 -1.9879 3.6399 18 6 2.0400 -0.7212 -1.2493 19 6 3.5649 -0.6826 -1.4198 20 7 3.3466 -0.4678 -2.8583 21 6 4.0405 -0.7260 -4.0102 22 1 4.9434 -1.3177 -3.9757 23 6 3.5835 -0.2273 -5.2224 24 7 4.0589 -0.7063 -6.3524 25 14 2.2937 1.1237 -5.2498 26 1 0.9394 0.5148 -5.2731 27 1 2.4357 1.9684 -4.0367 28 1 2.4805 1.9620 -6.4613 29 6 2.0581 0.1522 -2.5146 30 1 -0.3634 0.5870 0.8435 31 1 -0.3634 0.4370 -0.9301 32 1 -0.3634 -1.0240 0.0866 33 1 2.2490 -1.6318 1.1525 34 1 2.6304 0.8849 5.1119 35 1 3.5520 -4.4637 3.3917 36 1 4.3377 -6.6548 4.1911 37 1 5.0189 -6.9387 6.5391 38 1 4.9276 -5.0307 8.0909 39 1 4.1551 -2.8325 7.2980 40 1 1.5993 -1.7082 -1.3899 41 1 4.0513 -1.6310 -1.1915 42 1 4.0372 0.1639 -0.9213 43 1 4.7803 -1.3545 -6.3390 44 1 2.1321 1.2192 -2.3045 45 1 1.2607 -0.0848 -3.2190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970855016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:42 Heat of formation + Delta-G solvation = 167.175026 kcal Electronic energy + Delta-G solvation = -28332.906988 eV Core-core repulsion = 24355.536648 eV Total energy + Delta-G solvation = -3977.370340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.05017 -39.99087 -39.54617 -38.45002 -35.12066 -34.27378 -32.99069 -32.34037 -31.50484 -30.87094 -29.67144 -27.81149 -25.59547 -25.10026 -24.21198 -23.71230 -22.49654 -21.80245 -20.99790 -20.42851 -19.55499 -18.80734 -17.57085 -17.46086 -16.78675 -16.75793 -16.17280 -15.71963 -15.15242 -15.12311 -14.87231 -14.52606 -14.46716 -14.01333 -13.97371 -13.64841 -13.41561 -13.33181 -13.02130 -12.58075 -12.30479 -12.10849 -11.98902 -11.88741 -11.77950 -11.33419 -11.24286 -11.17423 -11.10103 -10.73925 -10.60558 -10.39021 -10.24178 -10.01002 -9.58446 -9.47110 -9.18808 -9.10061 -8.75294 -8.67968 -7.17378 -6.30016 -3.21964 0.08333 0.76850 1.32205 1.48646 1.55050 2.95502 3.07905 3.22437 3.34869 3.42144 3.50316 3.64242 4.30667 4.32199 4.44621 4.53332 4.60332 4.63480 4.73226 4.78393 4.89913 4.97005 5.08059 5.10722 5.20967 5.41487 5.42156 5.44162 5.51324 5.54766 5.75134 5.75730 5.80253 5.86392 5.92836 6.02783 6.06016 6.17083 6.26072 6.26864 6.34596 6.39659 6.45580 6.52196 6.93265 7.13822 7.26739 7.51574 8.05101 8.24402 8.97975 9.51438 10.38227 11.19873 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015047 B = 0.002377 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.347846 B =11778.439362 C =13129.873191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.093 0.907 4 N -0.701 5.701 5 C 0.606 3.394 6 O -0.528 6.528 7 C -0.049 4.049 8 C 0.081 3.919 9 N -0.279 5.279 10 N -0.161 5.161 11 C 0.154 3.846 12 C -0.110 4.110 13 C -0.098 4.098 14 C -0.116 4.116 15 C -0.101 4.101 16 C -0.108 4.108 17 N -0.200 5.200 18 C -0.141 4.141 19 C 0.125 3.875 20 N -0.624 5.624 21 C -0.305 4.305 22 H 0.081 0.919 23 C -0.025 4.025 24 N -0.932 5.932 25 Si 1.061 2.939 26 H -0.292 1.292 27 H -0.281 1.281 28 H -0.295 1.295 29 C 0.115 3.885 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.406 0.594 34 H 0.220 0.780 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.100 0.900 41 H 0.043 0.957 42 H 0.035 0.965 43 H 0.261 0.739 44 H 0.048 0.952 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 -8.162 29.300 30.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.111 0.889 4 N -0.351 5.351 5 C 0.389 3.611 6 O -0.403 6.403 7 C -0.217 4.217 8 C -0.111 4.111 9 N -0.106 5.106 10 N -0.053 5.053 11 C 0.063 3.937 12 C -0.131 4.131 13 C -0.117 4.117 14 C -0.135 4.135 15 C -0.120 4.120 16 C -0.129 4.129 17 N -0.044 5.044 18 C -0.161 4.161 19 C -0.001 4.001 20 N -0.352 5.352 21 C -0.431 4.431 22 H 0.099 0.901 23 C -0.224 4.224 24 N -0.574 5.574 25 Si 0.893 3.107 26 H -0.220 1.220 27 H -0.207 1.207 28 H -0.222 1.222 29 C -0.012 4.012 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.241 0.759 34 H 0.236 0.764 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.118 0.882 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.968 -7.563 28.543 29.793 hybrid contribution 0.954 -0.450 0.696 1.264 sum -3.014 -8.013 29.239 30.467 Atomic orbital electron populations 1.22144 0.94960 1.02130 1.02652 1.21114 0.94111 0.97498 0.82549 0.88875 1.45934 1.65685 1.14476 1.09041 1.16642 0.77664 0.85645 0.81186 1.90825 1.50722 1.14500 1.84232 1.23112 1.10934 0.89870 0.97737 1.25179 0.95510 1.00551 0.89827 1.78041 1.21057 0.91856 1.19691 1.48274 1.45678 1.08351 1.02998 1.17412 1.02046 0.79844 0.94423 1.21034 1.00416 0.91276 1.00330 1.21109 0.97787 0.96607 0.96196 1.21373 0.99155 0.99381 0.93590 1.21077 0.98815 0.91676 1.00412 1.20939 0.99515 0.99205 0.93203 1.73736 1.09709 1.16663 1.04306 1.23577 0.98516 1.00472 0.93541 1.22336 0.92597 0.98503 0.86684 1.46189 1.18425 1.69656 1.00928 1.20129 1.09584 1.30220 0.83166 0.90132 1.25799 1.03787 1.02117 0.90676 1.70905 1.27934 1.32506 1.26065 0.83792 0.75205 0.76689 0.75064 1.22005 1.20686 1.22241 1.22642 0.90328 0.95653 0.92557 0.92292 0.91014 0.92442 0.75894 0.76393 0.83943 0.84447 0.85027 0.84625 0.84125 0.88210 0.93882 0.94738 0.92899 0.93493 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.48 37.16 0.35 -1.60 16 2 C 0.15 2.10 2.34 -67.93 -0.16 1.94 16 3 H 0.09 1.44 7.42 -51.93 -0.39 1.06 16 4 N -0.70 -8.83 4.95 -54.78 -0.27 -9.10 16 5 C 0.61 8.12 7.79 -12.37 -0.10 8.02 16 6 O -0.53 -8.30 16.56 5.31 0.09 -8.21 16 7 C -0.05 -0.60 7.09 -82.99 -0.59 -1.19 16 8 C 0.08 0.85 11.91 -16.91 -0.20 0.65 16 9 N -0.28 -3.15 11.90 30.85 0.37 -2.78 16 10 N -0.16 -1.85 4.44 32.49 0.14 -1.71 16 11 C 0.15 1.49 6.74 -83.60 -0.56 0.93 16 12 C -0.11 -0.91 9.61 -39.40 -0.38 -1.29 16 13 C -0.10 -0.60 10.04 -39.61 -0.40 -1.00 16 14 C -0.12 -0.61 10.04 -39.55 -0.40 -1.00 16 15 C -0.10 -0.57 10.04 -39.61 -0.40 -0.97 16 16 C -0.11 -0.84 9.65 -39.40 -0.38 -1.22 16 17 N -0.20 -2.38 10.95 33.29 0.36 -2.02 16 18 C -0.14 -2.30 3.52 -89.97 -0.32 -2.62 16 19 C 0.13 2.44 8.13 -8.52 -0.07 2.37 16 20 N -0.62 -15.37 3.62 -184.61 -0.67 -16.03 16 21 C -0.30 -8.84 11.03 -15.06 -0.17 -9.01 16 22 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 23 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 24 N -0.93 -29.58 13.70 55.49 0.76 -28.82 16 25 Si 1.06 26.67 25.50 -169.99 -4.34 22.34 16 26 H -0.29 -6.98 6.97 56.52 0.39 -6.58 16 27 H -0.28 -6.55 5.66 56.52 0.32 -6.24 16 28 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 29 C 0.11 2.35 5.17 -8.38 -0.04 2.31 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.41 4.59 8.30 -40.82 -0.34 4.25 16 34 H 0.22 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.14 1.17 7.67 -52.48 -0.40 0.77 16 36 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.14 1.05 7.67 -52.49 -0.40 0.65 16 40 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.26 8.17 8.73 -40.82 -0.36 7.82 16 44 H 0.05 0.96 6.87 -51.93 -0.36 0.60 16 45 H 0.05 1.14 6.22 -51.93 -0.32 0.81 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -35.22 381.46 -7.80 -43.02 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.10 Total: 2.08 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -3.90 Total: -4.51 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.70 Total: -60.46 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -4.34 Total: 22.34 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.22 -7.80 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970855016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.198 kcal (2) G-P(sol) polarization free energy of solvation -35.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds