Wall clock time and date at job start Wed Apr 1 2020 00:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 N 1.46500 * 109.46866 * 120.00530 * 2 1 3 5 5 C 1.34768 * 119.99743 * 274.99573 * 4 2 1 6 6 O 1.21565 * 120.00249 * 0.02562 * 5 4 2 7 7 C 1.47763 * 119.99895 * 180.02562 * 5 4 2 8 8 C 1.40601 * 126.04603 * 180.02562 * 7 5 4 9 9 N 1.31252 * 106.62610 * 179.97438 * 8 7 5 10 10 N 1.40113 * 107.17483 * 0.02562 * 9 8 7 11 11 C 1.40138 * 125.56475 * 179.97438 * 10 9 8 12 12 C 1.38860 * 120.07077 * 179.74673 * 11 10 9 13 13 C 1.38109 * 119.93221 * 179.69632 * 12 11 10 14 14 C 1.38281 * 120.07088 * 0.58018 * 13 12 11 15 15 C 1.38290 * 120.13590 * 359.71624 * 14 13 12 16 16 C 1.38106 * 120.06672 * 359.97438 * 15 14 13 17 17 N 1.28708 * 108.86631 * 359.76083 * 10 9 8 18 18 C 1.53000 * 109.46982 * 240.00251 * 2 1 3 19 19 C 1.53491 * 114.20581 * 175.13701 * 18 2 1 20 20 N 1.47068 * 87.98931 * 220.34690 * 19 18 2 21 21 C 1.36939 * 136.05910 * 207.08893 * 20 19 18 22 22 H 1.07998 * 120.00182 * 7.79505 * 21 20 19 23 23 C 1.38813 * 119.99786 * 187.79929 * 21 20 19 24 24 N 1.31621 * 119.99915 * 195.16074 * 23 21 20 25 25 Si 1.86797 * 120.00091 * 15.16174 * 23 21 20 26 26 H 1.48505 * 109.47500 * 270.00100 * 25 23 21 27 27 H 1.48507 * 109.47318 * 30.00091 * 25 23 21 28 28 H 1.48506 * 109.47272 * 149.99672 * 25 23 21 29 29 C 1.47064 * 87.88132 * 27.34445 * 20 19 18 30 30 H 1.08999 * 109.47241 * 304.83623 * 1 2 3 31 31 H 1.09000 * 109.47347 * 64.83240 * 1 2 3 32 32 H 1.09001 * 109.47388 * 184.83581 * 1 2 3 33 33 H 0.96994 * 119.99876 * 95.00252 * 4 2 1 34 34 H 1.07994 * 126.68970 * 359.95533 * 8 7 5 35 35 H 1.08004 * 120.03183 * 359.97438 * 12 11 10 36 36 H 1.08003 * 119.96363 * 180.31779 * 13 12 11 37 37 H 1.07999 * 119.93788 * 179.69711 * 14 13 12 38 38 H 1.08001 * 119.96327 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.03790 * 180.02562 * 16 15 14 40 40 H 1.09004 * 113.41670 * 308.34718 * 18 2 1 41 41 H 1.09006 * 113.46406 * 105.56897 * 19 18 2 42 42 H 1.09000 * 113.52637 * 335.13768 * 19 18 2 43 43 H 0.96996 * 119.99969 * 354.93710 * 24 23 21 44 44 H 1.08997 * 113.47035 * 87.43951 * 29 20 19 45 45 H 1.09006 * 113.46815 * 217.87607 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0185 2.3570 6 8 1.8576 1.1610 2.4118 7 6 2.6400 -0.7150 3.5634 8 6 2.8220 -0.1409 4.8339 9 7 3.2706 -1.0946 5.6161 10 7 3.3684 -2.2560 4.8384 11 6 3.8089 -3.5064 5.2925 12 6 3.8557 -4.5863 4.4209 13 6 4.2963 -5.8158 4.8699 14 6 4.6793 -5.9750 6.1890 15 6 4.6281 -4.9030 7.0611 16 6 4.1945 -3.6695 6.6166 17 7 2.9832 -1.9879 3.6399 18 6 2.0400 -0.7212 -1.2493 19 6 3.5649 -0.6826 -1.4198 20 7 3.3466 -0.4678 -2.8583 21 6 4.0405 -0.7260 -4.0102 22 1 4.9434 -1.3177 -3.9757 23 6 3.5835 -0.2273 -5.2224 24 7 4.0589 -0.7063 -6.3524 25 14 2.2937 1.1237 -5.2498 26 1 0.9394 0.5148 -5.2731 27 1 2.4357 1.9684 -4.0367 28 1 2.4805 1.9620 -6.4613 29 6 2.0581 0.1522 -2.5146 30 1 -0.3634 0.5870 0.8435 31 1 -0.3634 0.4370 -0.9301 32 1 -0.3634 -1.0240 0.0866 33 1 2.2490 -1.6318 1.1525 34 1 2.6304 0.8849 5.1119 35 1 3.5520 -4.4637 3.3917 36 1 4.3377 -6.6548 4.1911 37 1 5.0189 -6.9387 6.5391 38 1 4.9276 -5.0307 8.0909 39 1 4.1551 -2.8325 7.2980 40 1 1.5993 -1.7082 -1.3899 41 1 4.0513 -1.6310 -1.1915 42 1 4.0372 0.1639 -0.9213 43 1 4.7803 -1.3545 -6.3390 44 1 2.1321 1.2192 -2.3045 45 1 1.2607 -0.0848 -3.2190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970855016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:41 Heat of formation + Delta-G solvation = 142.614652 kcal Electronic energy + Delta-G solvation = -28333.972005 eV Core-core repulsion = 24355.536648 eV Total energy + Delta-G solvation = -3978.435358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.88210 -41.15211 -40.22053 -39.81329 -36.37951 -34.98391 -34.54940 -33.74913 -32.15375 -31.85465 -30.46747 -29.55379 -26.94778 -26.25067 -25.37808 -24.68302 -23.37668 -22.48030 -22.33003 -21.47483 -21.11197 -19.55986 -19.53302 -18.56698 -17.64538 -17.45885 -17.19559 -16.89743 -16.34442 -16.12268 -15.88827 -15.74524 -15.48370 -15.24739 -15.08281 -14.89287 -14.50344 -14.50108 -13.95977 -13.64235 -13.41154 -13.35133 -13.11132 -13.04112 -12.62344 -12.60952 -12.55151 -12.42904 -12.00316 -11.95600 -11.80663 -11.73329 -11.53515 -11.39116 -11.33170 -11.00054 -10.83031 -10.17905 -10.09037 -9.40979 -9.24879 -8.62791 -5.47273 -0.62189 0.26959 0.50558 0.73940 0.80583 1.40774 1.53409 1.67605 1.94133 2.10213 2.51910 2.54378 2.69298 3.00487 3.15813 3.43163 3.63807 3.76325 3.81950 3.83438 3.90411 4.15407 4.20230 4.29423 4.32906 4.36704 4.38877 4.48571 4.54234 4.63403 4.65593 4.75238 4.77977 4.81130 4.86572 4.97700 5.04018 5.20080 5.20239 5.28461 5.32053 5.39677 5.44910 5.46987 5.49041 5.89226 5.95109 6.31937 6.60473 6.69496 7.02528 7.32783 8.27941 8.88545 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015047 B = 0.002377 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.347846 B =11778.439362 C =13129.873191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.161 3.839 3 H 0.081 0.919 4 N -0.696 5.696 5 C 0.611 3.389 6 O -0.553 6.553 7 C -0.067 4.067 8 C 0.082 3.918 9 N -0.291 5.291 10 N -0.159 5.159 11 C 0.116 3.884 12 C -0.123 4.123 13 C -0.100 4.100 14 C -0.107 4.107 15 C -0.098 4.098 16 C -0.116 4.116 17 N -0.205 5.205 18 C -0.105 4.105 19 C 0.122 3.878 20 N -0.658 5.658 21 C -0.294 4.294 22 H 0.047 0.953 23 C -0.085 4.085 24 N -0.968 5.968 25 Si 1.100 2.900 26 H -0.270 1.270 27 H -0.255 1.255 28 H -0.304 1.304 29 C 0.106 3.894 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.413 0.587 34 H 0.244 0.756 35 H 0.136 0.864 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.139 0.861 40 H 0.115 0.885 41 H 0.047 0.953 42 H 0.039 0.961 43 H 0.246 0.754 44 H 0.056 0.944 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.671 -8.951 32.106 33.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.056 3.944 3 H 0.099 0.901 4 N -0.346 5.346 5 C 0.395 3.605 6 O -0.430 6.430 7 C -0.233 4.233 8 C -0.108 4.108 9 N -0.118 5.118 10 N -0.052 5.052 11 C 0.026 3.974 12 C -0.144 4.144 13 C -0.119 4.119 14 C -0.126 4.126 15 C -0.116 4.116 16 C -0.137 4.137 17 N -0.050 5.050 18 C -0.125 4.125 19 C -0.003 4.003 20 N -0.386 5.386 21 C -0.421 4.421 22 H 0.065 0.935 23 C -0.277 4.277 24 N -0.613 5.613 25 Si 0.924 3.076 26 H -0.196 1.196 27 H -0.179 1.179 28 H -0.232 1.232 29 C -0.020 4.020 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.250 0.750 34 H 0.260 0.740 35 H 0.154 0.846 36 H 0.177 0.823 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.157 0.843 40 H 0.133 0.867 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.261 -8.379 31.416 32.937 hybrid contribution 1.495 -0.394 -0.006 1.546 sum -3.766 -8.774 31.409 32.828 Atomic orbital electron populations 1.22106 0.93098 1.03173 1.03009 1.20916 0.95398 0.96373 0.81731 0.90119 1.45818 1.65522 1.14740 1.08556 1.16690 0.77076 0.85276 0.81470 1.90808 1.51923 1.15529 1.84693 1.22959 1.12342 0.90191 0.97810 1.25600 0.94661 1.01430 0.89103 1.78023 1.21675 0.92048 1.20067 1.48535 1.44953 1.08962 1.02756 1.17844 1.04256 0.79611 0.95642 1.21154 1.01188 0.91977 1.00048 1.21436 0.96952 0.96265 0.97229 1.21796 0.97332 1.00516 0.92929 1.21455 0.97568 0.90745 1.01876 1.21105 0.99786 1.00272 0.92501 1.73681 1.09823 1.16668 1.04843 1.23259 0.95814 1.00476 0.92931 1.22519 0.95301 0.98690 0.83786 1.46294 1.20162 1.70492 1.01658 1.19978 1.08319 1.28463 0.85356 0.93542 1.27141 1.06156 1.04011 0.90378 1.71016 1.28992 1.33863 1.27427 0.83343 0.74079 0.74446 0.75687 1.19567 1.17919 1.23163 1.22864 0.88221 0.96583 0.94286 0.92295 0.90397 0.91023 0.75046 0.74041 0.84633 0.82341 0.81910 0.81832 0.84321 0.86704 0.93509 0.94314 0.94500 0.92594 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.48 71.98 0.68 -2.64 16 2 C 0.16 4.06 2.34 44.99 0.11 4.17 16 3 H 0.08 2.32 7.42 -2.39 -0.02 2.30 16 4 N -0.70 -16.32 4.95 -445.49 -2.21 -18.52 16 5 C 0.61 15.68 7.79 86.76 0.68 16.35 16 6 O -0.55 -16.76 16.56 -3.92 -0.06 -16.82 16 7 C -0.07 -1.58 7.09 42.21 0.30 -1.28 16 8 C 0.08 1.68 11.91 85.36 1.02 2.70 16 9 N -0.29 -6.43 11.90 -56.32 -0.67 -7.10 16 10 N -0.16 -3.62 4.44 -51.14 -0.23 -3.85 16 11 C 0.12 2.21 6.74 38.11 0.26 2.47 16 12 C -0.12 -1.95 9.61 22.39 0.22 -1.74 16 13 C -0.10 -1.02 10.04 22.25 0.22 -0.79 16 14 C -0.11 -0.78 10.04 22.29 0.22 -0.56 16 15 C -0.10 -0.85 10.04 22.25 0.22 -0.63 16 16 C -0.12 -1.69 9.65 22.39 0.22 -1.47 16 17 N -0.20 -4.81 10.95 -48.59 -0.53 -5.34 16 18 C -0.11 -3.17 3.52 -10.37 -0.04 -3.21 16 19 C 0.12 4.62 8.13 83.17 0.68 5.30 16 20 N -0.66 -31.91 3.62 -737.99 -2.67 -34.59 16 21 C -0.29 -17.37 11.03 84.03 0.93 -16.44 16 22 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 23 C -0.08 -5.15 5.50 84.86 0.47 -4.68 16 24 N -0.97 -63.33 13.70 21.65 0.30 -63.04 16 25 Si 1.10 53.31 25.50 68.60 1.75 55.06 16 26 H -0.27 -11.98 6.97 99.48 0.69 -11.29 16 27 H -0.25 -11.09 5.66 99.48 0.56 -10.53 16 28 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 29 C 0.11 4.10 5.17 83.26 0.43 4.53 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.41 8.62 8.30 -92.71 -0.77 7.85 16 34 H 0.24 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.14 2.23 7.67 -2.91 -0.02 2.21 16 36 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 37 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 38 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.14 1.99 7.67 -2.91 -0.02 1.96 16 40 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.04 1.47 8.10 -2.39 -0.02 1.45 16 43 H 0.25 16.17 8.73 -92.71 -0.81 15.36 16 44 H 0.06 2.11 6.87 -2.39 -0.02 2.10 16 45 H 0.05 2.14 6.22 -2.38 -0.01 2.12 16 Total: -1.00 -78.50 381.46 2.33 -76.17 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.06 Total: 15.94 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.60 Total: 2.08 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -6.01 Total: -132.44 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.06 Total: -16.82 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 1.75 Total: 55.06 kcal Total: -78.50 2.33 -76.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970855016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.787 kcal (2) G-P(sol) polarization free energy of solvation -78.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds