Wall clock time and date at job start Wed Apr 1 2020 00:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47518 * 2 1 4 4 N 1.46498 * 109.47037 * 240.00317 * 2 1 3 5 5 C 1.34776 * 120.00165 * 85.00185 * 4 2 1 6 6 O 1.21568 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.47760 * 120.00250 * 180.02562 * 5 4 2 8 8 C 1.40603 * 126.04361 * 179.97438 * 7 5 4 9 9 N 1.31246 * 106.62730 * 180.02562 * 8 7 5 10 10 N 1.40117 * 107.17538 * 0.02562 * 9 8 7 11 11 C 1.40135 * 125.56871 * 179.97438 * 10 9 8 12 12 C 1.38861 * 120.06996 * 0.02567 * 11 10 9 13 13 C 1.38114 * 119.93375 * 179.97438 * 12 11 10 14 14 C 1.38278 * 120.06812 * 0.02562 * 13 12 11 15 15 C 1.38291 * 120.13738 * 359.97438 * 14 13 12 16 16 C 1.38115 * 120.06885 * 0.02562 * 15 14 13 17 17 N 1.28713 * 108.86286 * 0.24023 * 10 9 8 18 18 C 1.52997 * 109.47139 * 120.00449 * 2 1 3 19 19 C 1.53949 * 113.74331 * 281.82262 * 18 2 1 20 20 N 1.47812 * 86.03417 * 222.08601 * 19 18 2 21 21 C 1.36938 * 134.45426 * 204.64377 * 20 19 18 22 22 H 1.07995 * 120.00552 * 179.86245 * 21 20 19 23 23 C 1.38818 * 119.99633 * 359.86530 * 21 20 19 24 24 N 1.31612 * 120.00329 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99629 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47375 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46831 * 120.00358 * 25 23 21 28 28 H 1.48496 * 109.47253 * 239.99775 * 25 23 21 29 29 C 1.47577 * 91.05566 * 24.54455 * 20 19 18 30 30 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47167 * 300.07228 * 1 2 3 32 32 H 1.09004 * 109.47250 * 60.06974 * 1 2 3 33 33 H 0.97002 * 120.00047 * 265.00140 * 4 2 1 34 34 H 1.08001 * 126.68949 * 359.97438 * 8 7 5 35 35 H 1.08009 * 120.03030 * 0.24798 * 12 11 10 36 36 H 1.08002 * 119.96474 * 179.97438 * 13 12 11 37 37 H 1.07998 * 119.93305 * 180.02562 * 14 13 12 38 38 H 1.08000 * 119.96296 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.03218 * 180.02562 * 16 15 14 40 40 H 1.09000 * 112.94536 * 53.41604 * 18 2 1 41 41 H 1.09000 * 113.76391 * 336.34977 * 19 18 2 42 42 H 1.09000 * 113.76699 * 107.74468 * 19 18 2 43 43 H 0.96996 * 120.00294 * 179.97438 * 24 23 21 44 44 H 1.09001 * 113.77291 * 221.15063 * 29 20 19 45 45 H 1.09007 * 113.86578 * 89.76748 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8576 1.1613 -2.4118 7 6 2.6390 -0.7148 -3.5638 8 6 2.8209 -0.1405 -4.8343 9 7 3.2684 -1.0943 -5.6169 10 7 3.3646 -2.2562 -4.8398 11 6 3.8027 -3.5072 -5.2948 12 6 4.1880 -3.6701 -6.6189 13 6 4.6199 -4.9041 -7.0641 14 6 4.6683 -5.9769 -6.1930 15 6 4.2852 -5.8179 -4.8737 16 6 3.8524 -4.5864 -4.4224 17 7 2.9795 -1.9883 -3.6412 18 6 2.0400 -0.7213 1.2492 19 6 1.9744 0.1327 2.5283 20 7 3.3098 -0.4181 2.8415 21 6 4.0194 -0.6147 3.9961 22 1 5.0066 -1.0508 3.9556 23 6 3.4698 -0.2536 5.2186 24 7 2.2669 0.2783 5.2680 25 14 4.4375 -0.5225 6.7936 26 1 5.7530 -1.1301 6.4688 27 1 4.6491 0.7809 7.4732 28 1 3.6800 -1.4313 7.6910 29 6 3.5701 -0.6732 1.4115 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8893 32 1 -0.3634 0.5128 -0.8906 33 1 2.2490 -1.6317 -1.1527 34 1 2.6288 0.8853 -5.1122 35 1 4.1542 -2.8315 -7.2988 36 1 4.9193 -5.0315 -8.0940 37 1 5.0067 -6.9408 -6.5434 38 1 4.3246 -6.6576 -4.1957 39 1 3.5538 -4.4627 -3.3919 40 1 1.6176 -1.7194 1.3657 41 1 1.9751 1.2064 2.3401 42 1 1.1953 -0.1779 3.2245 43 1 1.8827 0.5303 6.1222 44 1 4.0628 -1.6260 1.2177 45 1 4.0408 0.1622 0.8930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970855017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:45 Heat of formation + Delta-G solvation = 160.524530 kcal Electronic energy + Delta-G solvation = -28230.523532 eV Core-core repulsion = 24252.864805 eV Total energy + Delta-G solvation = -3977.658727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.98709 -39.84412 -39.43463 -37.98172 -34.88586 -34.21935 -32.91041 -32.10235 -31.45099 -30.67853 -29.57197 -27.46897 -25.48718 -24.69674 -24.15315 -23.79009 -22.55107 -21.75074 -21.17074 -20.29591 -19.27015 -18.70123 -17.38073 -16.77160 -16.71392 -16.69874 -15.95320 -15.67336 -15.05933 -14.83354 -14.71645 -14.47901 -14.27477 -13.97783 -13.96278 -13.55091 -13.37769 -13.11169 -12.56252 -12.30556 -12.07481 -12.04496 -11.84460 -11.59288 -11.40107 -11.28023 -11.22603 -11.11841 -10.89473 -10.69235 -10.54724 -10.33566 -10.27878 -9.81030 -9.76036 -9.54963 -9.41851 -8.93668 -8.78631 -8.68328 -6.85959 -5.75689 -3.07478 0.13251 0.80250 1.38643 1.54412 1.60992 3.08134 3.16593 3.27343 3.39569 3.42633 3.44886 3.47458 4.35659 4.36083 4.46233 4.51508 4.57442 4.73556 4.81851 4.93734 5.09206 5.14862 5.20635 5.27124 5.40714 5.45499 5.54905 5.57014 5.65162 5.79012 5.82520 5.84696 5.96208 6.00348 6.07999 6.09627 6.26647 6.37680 6.46548 6.50305 6.56029 6.63966 6.79009 7.23887 7.35380 7.37838 7.57414 7.62697 7.99573 8.17345 9.06244 9.72268 10.61566 11.41742 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.002289 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.579561 B =12228.180392 C =13721.046093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.091 0.909 4 N -0.700 5.700 5 C 0.604 3.396 6 O -0.529 6.529 7 C -0.048 4.048 8 C 0.080 3.920 9 N -0.280 5.280 10 N -0.163 5.163 11 C 0.155 3.845 12 C -0.108 4.108 13 C -0.101 4.101 14 C -0.117 4.117 15 C -0.098 4.098 16 C -0.110 4.110 17 N -0.200 5.200 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.613 5.613 21 C -0.221 4.221 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.125 3.875 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.405 0.595 34 H 0.220 0.780 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.089 0.911 41 H 0.029 0.971 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.040 0.960 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 -10.552 -25.987 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.109 0.891 4 N -0.350 5.350 5 C 0.386 3.614 6 O -0.404 6.404 7 C -0.215 4.215 8 C -0.111 4.111 9 N -0.107 5.107 10 N -0.055 5.055 11 C 0.064 3.936 12 C -0.129 4.129 13 C -0.120 4.120 14 C -0.136 4.136 15 C -0.117 4.117 16 C -0.131 4.131 17 N -0.044 5.044 18 C -0.167 4.167 19 C 0.051 3.949 20 N -0.339 5.339 21 C -0.349 4.349 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.236 0.764 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.108 0.892 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.610 -10.806 -26.119 28.273 hybrid contribution 0.406 0.413 1.196 1.329 sum 1.016 -10.392 -24.923 27.022 Atomic orbital electron populations 1.22119 0.95145 1.01953 1.02456 1.21225 0.94005 0.97554 0.82646 0.89075 1.46008 1.65449 1.14401 1.09150 1.16663 0.77796 0.85686 0.81223 1.90824 1.50807 1.14523 1.84235 1.23165 1.10719 0.89801 0.97794 1.25181 0.95519 1.00543 0.89860 1.78030 1.21119 0.91855 1.19720 1.48276 1.45839 1.08286 1.03055 1.17408 1.01963 0.79863 0.94366 1.20940 0.99552 0.99192 0.93236 1.21070 0.98843 0.91689 1.00388 1.21364 0.99242 0.99362 0.93621 1.21108 0.97846 0.96580 0.96171 1.21037 1.00439 0.91265 1.00341 1.73740 1.09771 1.16697 1.04231 1.23871 0.97624 1.00832 0.94404 1.22233 0.89620 0.93899 0.89197 1.45995 1.16356 1.71861 0.99651 1.19067 0.98430 1.34587 0.82805 0.90284 1.24780 0.97096 1.01192 0.97483 1.69810 1.15377 1.47415 1.24263 0.86057 0.78935 0.77346 0.83490 1.20516 1.21753 1.21708 1.22537 0.93063 0.97718 0.86790 0.92675 0.90848 0.92677 0.76058 0.76409 0.84139 0.84662 0.85068 0.84470 0.83918 0.89233 0.95320 0.90639 0.93681 0.94144 0.94986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.44 37.16 0.35 -1.84 16 2 C 0.15 2.29 2.29 -67.93 -0.16 2.14 16 3 H 0.09 1.57 7.48 -51.93 -0.39 1.18 16 4 N -0.70 -9.54 4.94 -54.78 -0.27 -9.81 16 5 C 0.60 8.63 7.79 -12.37 -0.10 8.53 16 6 O -0.53 -8.85 16.56 5.31 0.09 -8.76 16 7 C -0.05 -0.61 7.09 -82.99 -0.59 -1.19 16 8 C 0.08 0.89 11.91 -16.91 -0.20 0.69 16 9 N -0.28 -3.27 11.90 30.85 0.37 -2.91 16 10 N -0.16 -1.94 4.44 32.48 0.14 -1.79 16 11 C 0.15 1.55 6.74 -83.60 -0.56 0.99 16 12 C -0.11 -0.88 9.65 -39.40 -0.38 -1.26 16 13 C -0.10 -0.59 10.04 -39.61 -0.40 -0.99 16 14 C -0.12 -0.63 10.04 -39.55 -0.40 -1.03 16 15 C -0.10 -0.62 10.04 -39.61 -0.40 -1.02 16 16 C -0.11 -0.94 9.61 -39.40 -0.38 -1.32 16 17 N -0.20 -2.49 10.95 33.29 0.36 -2.12 16 18 C -0.15 -2.63 3.35 -89.69 -0.30 -2.93 16 19 C 0.18 4.06 6.98 -2.84 -0.02 4.04 16 20 N -0.61 -15.77 3.70 -177.70 -0.66 -16.42 16 21 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -27.35 11.39 55.49 0.63 -26.72 16 25 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.13 2.55 8.38 -2.97 -0.02 2.52 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.40 4.95 8.30 -40.82 -0.34 4.62 16 34 H 0.22 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.14 1.09 7.67 -52.48 -0.40 0.68 16 36 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 37 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 38 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.14 1.21 7.67 -52.49 -0.40 0.81 16 40 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 42 H 0.08 1.91 7.17 -51.93 -0.37 1.54 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -33.95 387.77 -8.41 -42.36 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.09 Total: 2.52 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -3.81 Total: 0.56 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.58 Total: -59.78 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.95 -8.41 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970855017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.887 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds