Wall clock time and date at job start Wed Apr 1 2020 00:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47518 * 2 1 4 4 N 1.46498 * 109.47037 * 240.00317 * 2 1 3 5 5 C 1.34776 * 120.00165 * 85.00185 * 4 2 1 6 6 O 1.21568 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.47760 * 120.00250 * 180.02562 * 5 4 2 8 8 C 1.40603 * 126.04361 * 179.97438 * 7 5 4 9 9 N 1.31246 * 106.62730 * 180.02562 * 8 7 5 10 10 N 1.40117 * 107.17538 * 0.02562 * 9 8 7 11 11 C 1.40135 * 125.56871 * 179.97438 * 10 9 8 12 12 C 1.38861 * 120.06996 * 0.02567 * 11 10 9 13 13 C 1.38114 * 119.93375 * 179.97438 * 12 11 10 14 14 C 1.38278 * 120.06812 * 0.02562 * 13 12 11 15 15 C 1.38291 * 120.13738 * 359.97438 * 14 13 12 16 16 C 1.38115 * 120.06885 * 0.02562 * 15 14 13 17 17 N 1.28713 * 108.86286 * 0.24023 * 10 9 8 18 18 C 1.52997 * 109.47139 * 120.00449 * 2 1 3 19 19 C 1.53949 * 113.74331 * 281.82262 * 18 2 1 20 20 N 1.47812 * 86.03417 * 222.08601 * 19 18 2 21 21 C 1.36938 * 134.45426 * 204.64377 * 20 19 18 22 22 H 1.07995 * 120.00552 * 179.86245 * 21 20 19 23 23 C 1.38818 * 119.99633 * 359.86530 * 21 20 19 24 24 N 1.31612 * 120.00329 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99629 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47375 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46831 * 120.00358 * 25 23 21 28 28 H 1.48496 * 109.47253 * 239.99775 * 25 23 21 29 29 C 1.47577 * 91.05566 * 24.54455 * 20 19 18 30 30 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47167 * 300.07228 * 1 2 3 32 32 H 1.09004 * 109.47250 * 60.06974 * 1 2 3 33 33 H 0.97002 * 120.00047 * 265.00140 * 4 2 1 34 34 H 1.08001 * 126.68949 * 359.97438 * 8 7 5 35 35 H 1.08009 * 120.03030 * 0.24798 * 12 11 10 36 36 H 1.08002 * 119.96474 * 179.97438 * 13 12 11 37 37 H 1.07998 * 119.93305 * 180.02562 * 14 13 12 38 38 H 1.08000 * 119.96296 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.03218 * 180.02562 * 16 15 14 40 40 H 1.09000 * 112.94536 * 53.41604 * 18 2 1 41 41 H 1.09000 * 113.76391 * 336.34977 * 19 18 2 42 42 H 1.09000 * 113.76699 * 107.74468 * 19 18 2 43 43 H 0.96996 * 120.00294 * 179.97438 * 24 23 21 44 44 H 1.09001 * 113.77291 * 221.15063 * 29 20 19 45 45 H 1.09007 * 113.86578 * 89.76748 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8576 1.1613 -2.4118 7 6 2.6390 -0.7148 -3.5638 8 6 2.8209 -0.1405 -4.8343 9 7 3.2684 -1.0943 -5.6169 10 7 3.3646 -2.2562 -4.8398 11 6 3.8027 -3.5072 -5.2948 12 6 4.1880 -3.6701 -6.6189 13 6 4.6199 -4.9041 -7.0641 14 6 4.6683 -5.9769 -6.1930 15 6 4.2852 -5.8179 -4.8737 16 6 3.8524 -4.5864 -4.4224 17 7 2.9795 -1.9883 -3.6412 18 6 2.0400 -0.7213 1.2492 19 6 1.9744 0.1327 2.5283 20 7 3.3098 -0.4181 2.8415 21 6 4.0194 -0.6147 3.9961 22 1 5.0066 -1.0508 3.9556 23 6 3.4698 -0.2536 5.2186 24 7 2.2669 0.2783 5.2680 25 14 4.4375 -0.5225 6.7936 26 1 5.7530 -1.1301 6.4688 27 1 4.6491 0.7809 7.4732 28 1 3.6800 -1.4313 7.6910 29 6 3.5701 -0.6732 1.4115 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8893 32 1 -0.3634 0.5128 -0.8906 33 1 2.2490 -1.6317 -1.1527 34 1 2.6288 0.8853 -5.1122 35 1 4.1542 -2.8315 -7.2988 36 1 4.9193 -5.0315 -8.0940 37 1 5.0067 -6.9408 -6.5434 38 1 4.3246 -6.6576 -4.1957 39 1 3.5538 -4.4627 -3.3919 40 1 1.6176 -1.7194 1.3657 41 1 1.9751 1.2064 2.3401 42 1 1.1953 -0.1779 3.2245 43 1 1.8827 0.5303 6.1222 44 1 4.0628 -1.6260 1.2177 45 1 4.0408 0.1622 0.8930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970855017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:44 Heat of formation + Delta-G solvation = 138.676214 kcal Electronic energy + Delta-G solvation = -28231.470946 eV Core-core repulsion = 24252.864805 eV Total energy + Delta-G solvation = -3978.606141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.86587 -41.00057 -40.13395 -39.54091 -36.26737 -34.96712 -34.23948 -33.66306 -32.08467 -31.78495 -30.42141 -29.31840 -26.74019 -26.12777 -25.58827 -24.71601 -23.48404 -22.48716 -22.43181 -21.44348 -20.78843 -19.51774 -18.79114 -18.43029 -17.62193 -17.37377 -17.13864 -16.82225 -16.32609 -16.03940 -15.78209 -15.73676 -15.41319 -15.06896 -14.96203 -14.69486 -14.47883 -14.12145 -13.93542 -13.41253 -13.35229 -13.26289 -13.07400 -12.95780 -12.70136 -12.59955 -12.53653 -12.37787 -12.01675 -11.98236 -11.93812 -11.82324 -11.62415 -11.37349 -11.28166 -11.16190 -10.87698 -10.14476 -10.06824 -9.39003 -8.91998 -7.90716 -5.24008 -0.60437 0.29113 0.52183 0.75891 0.82129 1.45295 1.46553 1.56654 1.97627 2.11861 2.47033 2.53682 2.71414 3.29589 3.38460 3.52279 3.72554 3.81392 3.84319 3.91944 3.96777 4.17371 4.27125 4.34848 4.38318 4.40394 4.44664 4.55853 4.57975 4.76484 4.82249 4.84270 4.86979 4.95170 4.99930 5.07690 5.22334 5.25402 5.30426 5.32970 5.44787 5.46933 5.49570 5.54805 5.65196 5.91347 5.94381 6.34808 6.62627 6.92559 7.05360 7.60487 8.56358 9.26504 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.002289 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.579561 B =12228.180392 C =13721.046093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.072 0.928 4 N -0.694 5.694 5 C 0.610 3.390 6 O -0.556 6.556 7 C -0.066 4.066 8 C 0.082 3.918 9 N -0.290 5.290 10 N -0.159 5.159 11 C 0.116 3.884 12 C -0.116 4.116 13 C -0.098 4.098 14 C -0.107 4.107 15 C -0.100 4.100 16 C -0.122 4.122 17 N -0.203 5.203 18 C -0.110 4.110 19 C 0.173 3.827 20 N -0.644 5.644 21 C -0.235 4.235 22 H 0.082 0.918 23 C -0.068 4.068 24 N -0.952 5.952 25 Si 0.979 3.021 26 H -0.266 1.266 27 H -0.294 1.294 28 H -0.289 1.289 29 C 0.126 3.874 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.414 0.586 34 H 0.243 0.757 35 H 0.138 0.862 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.136 0.864 40 H 0.104 0.896 41 H 0.016 0.984 42 H 0.048 0.952 43 H 0.249 0.751 44 H 0.057 0.943 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.291 -12.918 -27.831 30.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.057 3.943 3 H 0.090 0.910 4 N -0.344 5.344 5 C 0.393 3.607 6 O -0.433 6.433 7 C -0.232 4.232 8 C -0.108 4.108 9 N -0.118 5.118 10 N -0.052 5.052 11 C 0.026 3.974 12 C -0.137 4.137 13 C -0.117 4.117 14 C -0.126 4.126 15 C -0.118 4.118 16 C -0.143 4.143 17 N -0.049 5.049 18 C -0.130 4.130 19 C 0.047 3.953 20 N -0.371 5.371 21 C -0.363 4.363 22 H 0.099 0.901 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.807 3.193 26 H -0.191 1.191 27 H -0.221 1.221 28 H -0.216 1.216 29 C 0.001 3.999 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.250 0.750 34 H 0.259 0.741 35 H 0.156 0.844 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.154 0.846 40 H 0.122 0.878 41 H 0.034 0.966 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.569 -13.197 -28.002 30.996 hybrid contribution 0.190 1.017 1.636 1.936 sum 1.760 -12.180 -26.366 29.097 Atomic orbital electron populations 1.22058 0.93609 1.03020 1.02378 1.20903 0.95047 0.96167 0.82177 0.90992 1.45824 1.65366 1.14689 1.08497 1.16746 0.77110 0.85293 0.81532 1.90808 1.52049 1.15698 1.84737 1.22917 1.12394 0.90200 0.97705 1.25582 0.94705 1.01435 0.89083 1.78015 1.21702 0.92015 1.20026 1.48550 1.44925 1.08936 1.02758 1.17854 1.04323 0.79575 0.95627 1.21105 0.99795 1.00281 0.92507 1.21450 0.97600 0.90744 1.01871 1.21796 0.97311 1.00498 0.92949 1.21443 0.96948 0.96219 0.97207 1.21164 1.01148 0.91961 1.00054 1.73682 1.09808 1.16569 1.04812 1.23466 0.95895 1.00459 0.93174 1.22136 0.88094 0.93857 0.91216 1.46421 1.17388 1.72159 1.01092 1.19447 0.98724 1.33985 0.84173 0.90058 1.25633 0.98202 1.01608 1.00652 1.69992 1.16855 1.48707 1.24595 0.85009 0.78090 0.76888 0.79326 1.19058 1.22086 1.21582 1.22672 0.94938 0.98307 0.83967 0.91030 0.91283 0.92410 0.75018 0.74124 0.84374 0.81857 0.81883 0.82255 0.84584 0.87789 0.96630 0.93336 0.94181 0.92496 0.94887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.44 71.98 0.68 -3.40 16 2 C 0.16 4.88 2.29 44.99 0.10 4.98 16 3 H 0.07 2.51 7.48 -2.39 -0.02 2.49 16 4 N -0.69 -18.34 4.94 -445.49 -2.20 -20.54 16 5 C 0.61 17.19 7.79 86.76 0.68 17.86 16 6 O -0.56 -18.56 16.56 -3.93 -0.07 -18.62 16 7 C -0.07 -1.67 7.09 42.21 0.30 -1.37 16 8 C 0.08 1.79 11.91 85.36 1.02 2.81 16 9 N -0.29 -6.68 11.90 -56.32 -0.67 -7.35 16 10 N -0.16 -3.73 4.44 -51.14 -0.23 -3.96 16 11 C 0.12 2.25 6.74 38.11 0.26 2.51 16 12 C -0.12 -1.73 9.65 22.39 0.22 -1.52 16 13 C -0.10 -0.87 10.04 22.25 0.22 -0.65 16 14 C -0.11 -0.78 10.04 22.29 0.22 -0.56 16 15 C -0.10 -1.01 10.04 22.25 0.22 -0.79 16 16 C -0.12 -1.97 9.61 22.39 0.22 -1.76 16 17 N -0.20 -4.99 10.95 -48.59 -0.53 -5.52 16 18 C -0.11 -3.88 3.35 -10.13 -0.03 -3.91 16 19 C 0.17 8.16 6.98 86.44 0.60 8.76 16 20 N -0.64 -33.51 3.70 -716.13 -2.65 -36.16 16 21 C -0.23 -13.40 10.70 84.03 0.90 -12.50 16 22 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 23 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 24 N -0.95 -57.90 11.39 21.65 0.25 -57.65 16 25 Si 0.98 46.22 29.55 68.60 2.03 48.24 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 29 C 0.13 5.07 8.38 86.49 0.72 5.80 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 1.91 8.09 -2.39 -0.02 1.89 16 32 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.41 9.60 8.30 -92.71 -0.77 8.83 16 34 H 0.24 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.14 2.04 7.67 -2.91 -0.02 2.02 16 36 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.16 0.17 8.06 -2.91 -0.02 0.15 16 38 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 39 H 0.14 2.27 7.67 -2.91 -0.02 2.25 16 40 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.02 0.78 8.03 -2.39 -0.02 0.76 16 42 H 0.05 2.54 7.17 -2.39 -0.02 2.52 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.03 1.35 8.10 -2.38 -0.02 1.33 16 Total: -1.00 -74.64 387.77 2.97 -71.67 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.25 Total: 17.08 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.79 Total: 12.81 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -6.04 Total: -131.18 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.07 Total: -18.62 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.64 2.97 -71.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970855017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.346 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds