Wall clock time and date at job start Wed Apr 1 2020 00:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 N 1.46500 * 109.46866 * 120.00530 * 2 1 3 5 5 C 1.34768 * 119.99743 * 274.99573 * 4 2 1 6 6 O 1.21511 * 120.00435 * 0.02562 * 5 4 2 7 7 C 1.48160 * 119.99777 * 180.02562 * 5 4 2 8 8 C 1.39954 * 120.89219 * 359.72063 * 7 5 4 9 9 C 1.38039 * 119.13285 * 179.77634 * 8 7 5 10 10 N 1.31856 * 120.98465 * 0.51033 * 9 8 7 11 11 C 1.32226 * 121.97276 * 359.74194 * 10 9 8 12 12 N 1.39848 * 119.62390 * 180.02562 * 11 10 9 13 13 C 1.37172 * 126.48763 * 4.68125 * 12 11 10 14 14 C 1.34621 * 106.82650 * 179.87872 * 13 12 11 15 15 N 1.34146 * 108.21479 * 0.39395 * 14 13 12 16 16 C 1.30481 * 109.37444 * 359.75092 * 15 14 13 17 17 C 1.38910 * 120.75057 * 359.97438 * 11 10 9 18 18 C 1.53000 * 109.46982 * 240.00251 * 2 1 3 19 19 C 1.53491 * 114.20581 * 175.13701 * 18 2 1 20 20 N 1.47068 * 87.98931 * 220.34690 * 19 18 2 21 21 C 1.36939 * 136.05910 * 207.08893 * 20 19 18 22 22 H 1.07998 * 120.00182 * 7.79505 * 21 20 19 23 23 C 1.38813 * 119.99786 * 187.79929 * 21 20 19 24 24 N 1.31621 * 119.99915 * 195.16074 * 23 21 20 25 25 Si 1.86799 * 119.99814 * 15.16296 * 23 21 20 26 26 H 1.48507 * 109.47258 * 269.99571 * 25 23 21 27 27 H 1.48497 * 109.47644 * 30.00108 * 25 23 21 28 28 H 1.48510 * 109.46916 * 150.00000 * 25 23 21 29 29 C 1.47064 * 87.88132 * 27.34445 * 20 19 18 30 30 H 1.09000 * 109.47347 * 64.83240 * 1 2 3 31 31 H 1.09001 * 109.47388 * 184.83581 * 1 2 3 32 32 H 1.08999 * 109.47241 * 304.83623 * 1 2 3 33 33 H 0.96994 * 119.99876 * 95.00252 * 4 2 1 34 34 H 1.07997 * 120.42835 * 359.97438 * 8 7 5 35 35 H 1.08002 * 119.50916 * 180.27444 * 9 8 7 36 36 H 1.07995 * 126.58598 * 0.03033 * 13 12 11 37 37 H 1.07997 * 125.88730 * 180.10332 * 14 13 12 38 38 H 1.07999 * 125.72321 * 179.97438 * 16 15 14 39 39 H 1.07994 * 120.52933 * 180.02562 * 17 11 10 40 40 H 1.09004 * 113.41670 * 308.34718 * 18 2 1 41 41 H 1.09006 * 113.46406 * 105.56897 * 19 18 2 42 42 H 1.09000 * 113.52637 * 335.13768 * 19 18 2 43 43 H 0.96996 * 119.99969 * 354.93710 * 24 23 21 44 44 H 1.08997 * 113.47035 * 87.43951 * 29 20 19 45 45 H 1.09006 * 113.46815 * 217.87607 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0185 2.3570 6 8 1.8577 1.1604 2.4118 7 6 2.6414 -0.7169 3.5666 8 6 2.9745 -2.0756 3.5261 9 6 3.4360 -2.6889 4.6734 10 7 3.5560 -2.0164 5.8012 11 6 3.2485 -0.7333 5.8875 12 7 3.3953 -0.0679 7.1088 13 6 3.9251 -0.5876 8.2624 14 6 3.8781 0.3893 9.1874 15 7 3.3280 1.4749 8.6232 16 6 3.0343 1.2143 7.3789 17 6 2.7823 -0.0386 4.7786 18 6 2.0400 -0.7212 -1.2493 19 6 3.5649 -0.6826 -1.4198 20 7 3.3466 -0.4678 -2.8583 21 6 4.0405 -0.7260 -4.0102 22 1 4.9434 -1.3177 -3.9757 23 6 3.5835 -0.2273 -5.2224 24 7 4.0589 -0.7063 -6.3524 25 14 2.2937 1.1237 -5.2497 26 1 0.9394 0.5148 -5.2731 27 1 2.4357 1.9684 -4.0367 28 1 2.4805 1.9620 -6.4613 29 6 2.0581 0.1522 -2.5146 30 1 -0.3634 0.4370 -0.9301 31 1 -0.3634 -1.0240 0.0866 32 1 -0.3634 0.5870 0.8435 33 1 2.2490 -1.6318 1.1525 34 1 2.8748 -2.6361 2.6083 35 1 3.6990 -3.7361 4.6479 36 1 4.3086 -1.5876 8.4011 37 1 4.2198 0.3108 10.2089 38 1 2.5803 1.9020 6.6808 39 1 2.5326 1.0095 4.8530 40 1 1.5993 -1.7082 -1.3899 41 1 4.0513 -1.6310 -1.1915 42 1 4.0372 0.1639 -0.9213 43 1 4.7803 -1.3545 -6.3390 44 1 2.1321 1.2192 -2.3045 45 1 1.2607 -0.0848 -3.2190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970890961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:49 Heat of formation + Delta-G solvation = 116.040151 kcal Electronic energy + Delta-G solvation = -28288.229728 eV Core-core repulsion = 24308.642014 eV Total energy + Delta-G solvation = -3979.587715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.43616 -41.76554 -40.78564 -39.81426 -36.43677 -35.44603 -34.53378 -34.03598 -32.04478 -31.10331 -30.34328 -29.56928 -26.97782 -26.27960 -25.38637 -25.12229 -23.20175 -22.39694 -21.92430 -21.54377 -21.17277 -19.96338 -19.52310 -18.32172 -17.81884 -17.19225 -16.97407 -16.89806 -16.68249 -16.22420 -16.02135 -15.82825 -15.41106 -15.21444 -15.00778 -14.96960 -14.91300 -14.77830 -14.45953 -14.38803 -13.64429 -13.37840 -13.16668 -13.13147 -13.03598 -12.62435 -12.43576 -11.92970 -11.81075 -11.73626 -11.57744 -11.42398 -11.27942 -11.19569 -11.02721 -10.88309 -10.79210 -10.18338 -9.95111 -9.56461 -9.23899 -8.61435 -5.46346 -0.64933 -0.38825 1.04068 1.28584 1.39757 1.52143 1.65880 1.76495 1.88225 2.02039 2.53602 2.64612 3.01668 3.11793 3.16569 3.27133 3.44473 3.57835 3.61519 3.74118 3.77752 3.85030 4.14946 4.19905 4.28583 4.33927 4.45424 4.48611 4.51568 4.61859 4.64339 4.67127 4.76085 4.78954 4.80954 4.86393 5.01300 5.04562 5.22202 5.24691 5.31921 5.39385 5.49767 5.62268 5.96369 5.98912 6.40594 6.55477 6.70398 6.87855 7.04570 7.34081 8.28720 8.89765 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.002062 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.532487 B =13574.897563 C =13932.229942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.161 3.839 3 H 0.073 0.927 4 N -0.695 5.695 5 C 0.560 3.440 6 O -0.564 6.564 7 C -0.065 4.065 8 C -0.133 4.133 9 C 0.138 3.862 10 N -0.498 5.498 11 C 0.327 3.673 12 N -0.416 5.416 13 C -0.031 4.031 14 C -0.042 4.042 15 N -0.510 5.510 16 C 0.189 3.811 17 C -0.132 4.132 18 C -0.102 4.102 19 C 0.123 3.877 20 N -0.658 5.658 21 C -0.291 4.291 22 H 0.050 0.950 23 C -0.085 4.085 24 N -0.969 5.969 25 Si 1.099 2.901 26 H -0.270 1.270 27 H -0.257 1.257 28 H -0.306 1.306 29 C 0.101 3.899 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.417 0.583 34 H 0.184 0.816 35 H 0.213 0.787 36 H 0.199 0.801 37 H 0.197 0.803 38 H 0.232 0.768 39 H 0.153 0.847 40 H 0.122 0.878 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.246 0.754 44 H 0.051 0.949 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 -5.623 28.647 29.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 H 0.091 0.909 4 N -0.346 5.346 5 C 0.346 3.654 6 O -0.443 6.443 7 C -0.077 4.077 8 C -0.153 4.153 9 C -0.020 4.020 10 N -0.210 5.210 11 C 0.100 3.900 12 N -0.099 5.099 13 C -0.160 4.160 14 C -0.186 4.186 15 N -0.228 5.228 16 C -0.093 4.093 17 C -0.155 4.155 18 C -0.122 4.122 19 C -0.003 4.003 20 N -0.386 5.386 21 C -0.419 4.419 22 H 0.067 0.933 23 C -0.277 4.277 24 N -0.614 5.614 25 Si 0.924 3.076 26 H -0.196 1.196 27 H -0.182 1.182 28 H -0.234 1.234 29 C -0.024 4.024 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.255 0.745 34 H 0.201 0.799 35 H 0.230 0.770 36 H 0.215 0.785 37 H 0.214 0.786 38 H 0.248 0.752 39 H 0.171 0.829 40 H 0.140 0.860 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.143 -3.654 28.579 29.684 hybrid contribution 1.648 -1.447 -0.613 2.277 sum -5.495 -5.101 27.966 28.953 Atomic orbital electron populations 1.22105 0.93314 1.03419 1.02641 1.20840 0.95194 0.96257 0.82132 0.90909 1.45770 1.65622 1.14863 1.08363 1.18232 0.77629 0.86073 0.83468 1.90796 1.51317 1.16913 1.85299 1.20153 0.99452 0.95145 0.92929 1.22809 0.97177 0.92977 1.02382 1.23292 0.92295 1.01419 0.85017 1.66928 1.16965 1.06134 1.31012 1.18078 0.97768 0.89631 0.84497 1.43243 1.46097 1.12216 1.08302 1.23259 1.05334 1.02446 0.85001 1.22861 1.05040 0.89088 1.01613 1.70347 1.16972 1.29042 1.06414 1.25870 1.03508 0.84549 0.95345 1.21657 1.00563 1.02440 0.90859 1.23267 0.95935 1.00533 0.92481 1.22543 0.95146 0.99029 0.83532 1.46304 1.20084 1.70373 1.01838 1.19982 1.08310 1.28318 0.85312 0.93259 1.27061 1.06126 1.04005 0.90544 1.71012 1.29020 1.33896 1.27486 0.83345 0.74204 0.74542 0.75521 1.19634 1.18164 1.23396 1.22871 0.88367 0.96484 0.94664 0.90905 0.90346 0.92766 0.74458 0.79862 0.77035 0.78454 0.78593 0.75176 0.82898 0.86026 0.92534 0.94556 0.94424 0.93168 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.48 71.98 0.68 -2.14 16 2 C 0.16 3.38 2.34 44.99 0.11 3.48 16 3 H 0.07 1.90 7.42 -2.39 -0.02 1.88 16 4 N -0.69 -11.05 4.91 -445.12 -2.19 -13.24 16 5 C 0.56 10.90 7.76 86.88 0.67 11.58 16 6 O -0.56 -15.55 16.10 -3.75 -0.06 -15.61 16 7 C -0.07 -0.96 5.91 -19.89 -0.12 -1.08 16 8 C -0.13 -1.04 9.61 22.64 0.22 -0.82 16 9 C 0.14 1.11 11.17 84.64 0.95 2.06 16 10 N -0.50 -7.27 9.87 -192.95 -1.90 -9.18 16 11 C 0.33 5.56 7.50 132.77 1.00 6.56 16 12 N -0.42 -7.56 2.98 -355.91 -1.06 -8.62 16 13 C -0.03 -0.52 11.17 83.03 0.93 0.41 16 14 C -0.04 -0.74 11.85 83.51 0.99 0.25 16 15 N -0.51 -11.15 11.24 -199.69 -2.24 -13.40 16 16 C 0.19 3.49 11.89 179.99 2.14 5.63 16 17 C -0.13 -2.19 9.07 22.76 0.21 -1.98 16 18 C -0.10 -2.63 3.52 -10.37 -0.04 -2.67 16 19 C 0.12 4.06 8.13 83.17 0.68 4.73 16 20 N -0.66 -29.86 3.62 -737.99 -2.67 -32.54 16 21 C -0.29 -16.51 11.03 84.03 0.93 -15.58 16 22 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 23 C -0.09 -5.02 5.50 84.86 0.47 -4.55 16 24 N -0.97 -61.93 13.70 21.65 0.30 -61.64 16 25 Si 1.10 52.04 25.50 68.60 1.75 53.78 16 26 H -0.27 -11.72 6.97 99.48 0.69 -11.02 16 27 H -0.26 -10.96 5.66 99.48 0.56 -10.39 16 28 H -0.31 -14.95 7.11 99.48 0.71 -14.24 16 29 C 0.10 3.68 5.17 83.26 0.43 4.11 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.42 3.87 6.74 -92.71 -0.62 3.24 16 34 H 0.18 0.15 6.53 -2.91 -0.02 0.13 16 35 H 0.21 0.05 8.06 -2.91 -0.02 0.03 16 36 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.20 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.23 2.93 7.07 -2.91 -0.02 2.91 16 39 H 0.15 2.50 6.46 -2.91 -0.02 2.48 16 40 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.25 15.81 8.73 -92.71 -0.81 15.00 16 44 H 0.05 1.82 6.87 -2.39 -0.02 1.80 16 45 H 0.05 1.94 6.22 -2.38 -0.01 1.93 16 Total: -1.00 -82.32 375.86 2.36 -79.96 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.21 Total: 10.48 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 10.23 Total: 9.98 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -9.77 Total: -138.61 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.06 Total: -15.61 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 1.75 Total: 53.78 kcal Total: -82.32 2.36 -79.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970890961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.005 kcal (2) G-P(sol) polarization free energy of solvation -82.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds