Wall clock time and date at job start Wed Apr 1 2020 00:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47575 * 2 1 4 4 N 1.46496 * 109.46943 * 239.99919 * 2 1 3 5 5 C 1.34784 * 120.00104 * 85.00130 * 4 2 1 6 6 O 1.21514 * 119.99503 * 359.97438 * 5 4 2 7 7 C 1.48159 * 120.00211 * 180.02562 * 5 4 2 8 8 C 1.39953 * 120.89168 * 359.97438 * 7 5 4 9 9 C 1.38037 * 119.13749 * 179.97438 * 8 7 5 10 10 N 1.31856 * 120.97858 * 359.97438 * 9 8 7 11 11 C 1.32232 * 121.97537 * 0.04490 * 10 9 8 12 12 N 1.39847 * 119.62326 * 179.97438 * 11 10 9 13 13 C 1.37164 * 126.48961 * 4.69075 * 12 11 10 14 14 C 1.34621 * 106.83171 * 179.83976 * 13 12 11 15 15 N 1.34147 * 108.21414 * 0.42453 * 14 13 12 16 16 C 1.30492 * 109.37319 * 359.73040 * 15 14 13 17 17 C 1.38904 * 120.74564 * 359.95140 * 11 10 9 18 18 C 1.52998 * 109.47300 * 120.00407 * 2 1 3 19 19 C 1.53949 * 113.74154 * 281.82058 * 18 2 1 20 20 N 1.47811 * 86.03621 * 222.08387 * 19 18 2 21 21 C 1.36938 * 134.45548 * 204.63963 * 20 19 18 22 22 H 1.07993 * 120.00404 * 179.86479 * 21 20 19 23 23 C 1.38817 * 119.99599 * 359.87152 * 21 20 19 24 24 N 1.31611 * 120.00315 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99699 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47030 * 59.99820 * 25 23 21 27 27 H 1.48499 * 109.47173 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47076 * 299.99853 * 25 23 21 29 29 C 1.47575 * 91.05001 * 24.54659 * 20 19 18 30 30 H 1.09001 * 109.47449 * 60.07102 * 1 2 3 31 31 H 1.09001 * 109.47763 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47130 * 300.06912 * 1 2 3 33 33 H 0.97006 * 120.00385 * 265.00255 * 4 2 1 34 34 H 1.08001 * 120.42915 * 359.71027 * 8 7 5 35 35 H 1.08000 * 119.51050 * 179.97438 * 9 8 7 36 36 H 1.08001 * 126.58809 * 359.97438 * 13 12 11 37 37 H 1.07995 * 125.89381 * 180.11573 * 14 13 12 38 38 H 1.08001 * 125.72404 * 179.97438 * 16 15 14 39 39 H 1.08008 * 120.52481 * 180.02562 * 17 11 10 40 40 H 1.08998 * 112.94488 * 53.40786 * 18 2 1 41 41 H 1.09005 * 113.76590 * 336.35225 * 19 18 2 42 42 H 1.08996 * 113.77245 * 107.73997 * 19 18 2 43 43 H 0.97007 * 120.00401 * 179.97438 * 24 23 21 44 44 H 1.09002 * 113.76683 * 221.14723 * 29 20 19 45 45 H 1.09003 * 113.87253 * 89.76889 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8575 1.1606 -2.4118 7 6 2.6402 -0.7168 -3.5671 8 6 2.9784 -2.0743 -3.5253 9 6 3.4338 -2.6891 -4.6743 10 7 3.5524 -2.0169 -5.8024 11 6 3.2451 -0.7336 -5.8885 12 7 3.3903 -0.0685 -7.1101 13 6 3.7488 -0.6321 -8.3081 14 6 3.7644 0.3610 -9.2169 15 7 3.4349 1.5032 -8.5955 16 6 3.2084 1.2598 -7.3336 17 6 2.7795 -0.0390 -4.7794 18 6 2.0400 -0.7213 1.2492 19 6 1.9744 0.1328 2.5283 20 7 3.3098 -0.4180 2.8416 21 6 4.0195 -0.6146 3.9961 22 1 5.0066 -1.0506 3.9556 23 6 3.4698 -0.2533 5.2186 24 7 2.2669 0.2785 5.2679 25 14 4.4376 -0.5221 6.7936 26 1 5.7079 0.2443 6.7309 27 1 3.6355 -0.0558 7.9531 28 1 4.7388 -1.9679 6.9489 29 6 3.5700 -0.6731 1.4115 30 1 -0.3634 0.5127 -0.8906 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 2.2489 -1.6318 -1.1526 34 1 2.8883 -2.6324 -2.6051 35 1 3.6968 -3.7362 -4.6488 36 1 3.9731 -1.6730 -8.4883 37 1 4.0059 0.2569 -10.2643 38 1 2.9245 1.9911 -6.5913 39 1 2.5292 1.0091 -4.8539 40 1 1.6175 -1.7193 1.3658 41 1 1.9751 1.2065 2.3401 42 1 1.1954 -0.1777 3.2245 43 1 1.8827 0.5305 6.1222 44 1 4.0627 -1.6259 1.2178 45 1 4.0407 0.1622 0.8929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970890962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:52 Heat of formation + Delta-G solvation = 133.226980 kcal Electronic energy + Delta-G solvation = -28181.321565 eV Core-core repulsion = 24202.479127 eV Total energy + Delta-G solvation = -3978.842438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.74873 -40.95506 -39.61585 -38.12852 -35.13710 -34.69284 -33.36565 -32.21643 -30.93574 -30.22300 -29.68281 -27.56350 -25.68117 -24.78386 -24.61316 -23.97493 -22.37753 -21.49029 -21.10623 -20.59148 -19.72502 -18.77081 -17.54018 -17.08056 -16.69511 -16.31283 -16.20905 -15.87113 -15.32633 -15.09211 -14.83938 -14.37818 -14.35049 -14.27217 -14.07990 -14.00364 -13.85097 -13.66173 -13.26159 -12.58640 -12.42515 -12.19093 -11.72254 -11.48971 -11.33031 -11.23389 -10.94735 -10.79607 -10.64134 -10.52821 -10.49458 -10.44639 -10.22540 -9.91640 -9.84114 -9.51725 -9.29639 -9.08707 -8.89716 -8.85023 -6.94470 -5.82485 -3.14962 0.01674 0.25514 1.70134 1.94315 2.60369 2.74546 2.82860 3.32433 3.35642 3.40013 3.41273 3.71629 4.04650 4.10083 4.24228 4.31751 4.39606 4.40428 4.74297 4.91729 4.99875 5.01971 5.05894 5.12320 5.25886 5.29329 5.40165 5.44826 5.52538 5.67122 5.69696 5.79123 5.86006 5.94663 6.13169 6.24510 6.27420 6.32461 6.40603 6.52668 6.65287 6.65960 7.14721 7.15994 7.27240 7.31329 7.49097 7.57718 7.92004 7.95362 8.98834 9.65257 10.53209 11.34640 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023931 B = 0.001939 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.744192 B =14435.250425 C =14715.971200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.091 0.909 4 N -0.705 5.705 5 C 0.555 3.445 6 O -0.525 6.525 7 C -0.052 4.052 8 C -0.151 4.151 9 C 0.134 3.866 10 N -0.486 5.486 11 C 0.342 3.658 12 N -0.411 5.411 13 C -0.027 4.027 14 C -0.030 4.030 15 N -0.478 5.478 16 C 0.196 3.804 17 C -0.125 4.125 18 C -0.148 4.148 19 C 0.176 3.824 20 N -0.611 5.611 21 C -0.226 4.226 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.289 1.289 28 H -0.284 1.284 29 C 0.125 3.875 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.399 0.601 34 H 0.151 0.849 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.177 0.823 38 H 0.214 0.786 39 H 0.157 0.843 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.255 0.745 44 H 0.040 0.960 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 -6.666 -23.537 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.109 0.891 4 N -0.355 5.355 5 C 0.339 3.661 6 O -0.402 6.402 7 C -0.063 4.063 8 C -0.172 4.172 9 C -0.023 4.023 10 N -0.199 5.199 11 C 0.114 3.886 12 N -0.094 5.094 13 C -0.156 4.156 14 C -0.175 4.175 15 N -0.194 5.194 16 C -0.085 4.085 17 C -0.148 4.148 18 C -0.168 4.168 19 C 0.050 3.950 20 N -0.337 5.337 21 C -0.353 4.353 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.211 1.211 29 C -0.002 4.002 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.235 0.765 34 H 0.169 0.831 35 H 0.193 0.807 36 H 0.200 0.800 37 H 0.194 0.806 38 H 0.230 0.770 39 H 0.174 0.826 40 H 0.108 0.892 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.284 -5.483 -24.258 24.903 hybrid contribution 0.514 -0.949 2.011 2.283 sum -0.770 -6.433 -22.246 23.170 Atomic orbital electron populations 1.22118 0.95044 1.01994 1.02546 1.21241 0.94052 0.97599 0.82556 0.89078 1.46068 1.65806 1.14135 1.09506 1.17987 0.78596 0.86594 0.82891 1.90807 1.49641 1.15095 1.84664 1.20351 0.97784 0.93988 0.94193 1.22459 0.99459 0.94281 1.01041 1.22598 0.93734 1.00051 0.85962 1.66867 1.16658 1.06571 1.29766 1.18024 0.96627 0.89293 0.84613 1.43138 1.50925 1.09000 1.06305 1.22934 1.07473 1.01215 0.83995 1.22432 1.06640 0.88110 1.00294 1.70364 1.17068 1.28064 1.03923 1.25481 1.04534 0.82749 0.95740 1.21644 1.00099 1.02403 0.90633 1.23896 0.97656 1.00868 0.94408 1.22233 0.89706 0.93890 0.89146 1.45965 1.16306 1.71882 0.99586 1.18964 0.98495 1.35085 0.82779 0.90344 1.24784 0.97060 1.00987 0.97531 1.69785 1.15345 1.47079 1.24601 0.86202 0.78910 0.77845 0.82803 1.21180 1.21498 1.21070 1.22536 0.92915 0.97690 0.87009 0.92735 0.92605 0.90754 0.76541 0.83112 0.80723 0.80031 0.80602 0.76951 0.82585 0.89172 0.95349 0.90590 0.93508 0.94142 0.95057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.44 37.15 0.35 -1.62 16 2 C 0.15 2.03 2.29 -67.94 -0.16 1.88 16 3 H 0.09 1.46 7.48 -51.93 -0.39 1.07 16 4 N -0.70 -7.63 4.90 -54.66 -0.27 -7.90 16 5 C 0.55 6.56 7.76 -12.18 -0.09 6.46 16 6 O -0.53 -8.06 16.10 5.35 0.09 -7.98 16 7 C -0.05 -0.48 5.91 -104.67 -0.62 -1.10 16 8 C -0.15 -0.98 9.61 -39.01 -0.37 -1.36 16 9 C 0.13 0.86 11.17 -17.62 -0.20 0.66 16 10 N -0.49 -4.33 9.87 -12.34 -0.12 -4.45 16 11 C 0.34 3.28 7.50 -154.42 -1.16 2.12 16 12 N -0.41 -4.01 2.98 -63.84 -0.19 -4.20 16 13 C -0.03 -0.24 11.17 -16.45 -0.18 -0.42 16 14 C -0.03 -0.28 11.85 -17.82 -0.21 -0.49 16 15 N -0.48 -5.36 11.24 -14.46 -0.16 -5.52 16 16 C 0.20 1.90 11.89 -89.57 -1.07 0.83 16 17 C -0.12 -1.17 9.07 -38.83 -0.35 -1.52 16 18 C -0.15 -2.40 3.35 -89.70 -0.30 -2.70 16 19 C 0.18 3.86 6.98 -2.84 -0.02 3.84 16 20 N -0.61 -15.04 3.70 -177.70 -0.66 -15.70 16 21 C -0.23 -6.18 10.70 -15.06 -0.16 -6.35 16 22 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -26.67 11.39 55.49 0.63 -26.04 16 25 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.12 2.34 8.37 -2.97 -0.02 2.31 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 33 H 0.40 3.22 6.74 -40.82 -0.28 2.95 16 34 H 0.15 0.58 6.53 -52.49 -0.34 0.24 16 35 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.21 1.43 7.07 -52.49 -0.37 1.06 16 39 H 0.16 1.37 6.46 -52.48 -0.34 1.03 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 42 H 0.08 1.85 7.17 -51.93 -0.37 1.47 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.03 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -35.04 382.17 -10.46 -45.50 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.85 Total: 1.56 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -4.66 Total: 2.26 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.77 Total: -63.80 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.98 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.04 -10.46 -45.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970890962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.731 kcal (2) G-P(sol) polarization free energy of solvation -35.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds