Wall clock time and date at job start Wed Apr 1 2020 00:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47575 * 2 1 4 4 N 1.46496 * 109.46943 * 239.99919 * 2 1 3 5 5 C 1.34784 * 120.00104 * 85.00130 * 4 2 1 6 6 O 1.21514 * 119.99503 * 359.97438 * 5 4 2 7 7 C 1.48159 * 120.00211 * 180.02562 * 5 4 2 8 8 C 1.39953 * 120.89168 * 359.97438 * 7 5 4 9 9 C 1.38037 * 119.13749 * 179.97438 * 8 7 5 10 10 N 1.31856 * 120.97858 * 359.97438 * 9 8 7 11 11 C 1.32232 * 121.97537 * 0.04490 * 10 9 8 12 12 N 1.39847 * 119.62326 * 179.97438 * 11 10 9 13 13 C 1.37164 * 126.48961 * 4.69075 * 12 11 10 14 14 C 1.34621 * 106.83171 * 179.83976 * 13 12 11 15 15 N 1.34147 * 108.21414 * 0.42453 * 14 13 12 16 16 C 1.30492 * 109.37319 * 359.73040 * 15 14 13 17 17 C 1.38904 * 120.74564 * 359.95140 * 11 10 9 18 18 C 1.52998 * 109.47300 * 120.00407 * 2 1 3 19 19 C 1.53949 * 113.74154 * 281.82058 * 18 2 1 20 20 N 1.47811 * 86.03621 * 222.08387 * 19 18 2 21 21 C 1.36938 * 134.45548 * 204.63963 * 20 19 18 22 22 H 1.07993 * 120.00404 * 179.86479 * 21 20 19 23 23 C 1.38817 * 119.99599 * 359.87152 * 21 20 19 24 24 N 1.31611 * 120.00315 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99699 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47030 * 59.99820 * 25 23 21 27 27 H 1.48499 * 109.47173 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47076 * 299.99853 * 25 23 21 29 29 C 1.47575 * 91.05001 * 24.54659 * 20 19 18 30 30 H 1.09001 * 109.47449 * 60.07102 * 1 2 3 31 31 H 1.09001 * 109.47763 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47130 * 300.06912 * 1 2 3 33 33 H 0.97006 * 120.00385 * 265.00255 * 4 2 1 34 34 H 1.08001 * 120.42915 * 359.71027 * 8 7 5 35 35 H 1.08000 * 119.51050 * 179.97438 * 9 8 7 36 36 H 1.08001 * 126.58809 * 359.97438 * 13 12 11 37 37 H 1.07995 * 125.89381 * 180.11573 * 14 13 12 38 38 H 1.08001 * 125.72404 * 179.97438 * 16 15 14 39 39 H 1.08008 * 120.52481 * 180.02562 * 17 11 10 40 40 H 1.08998 * 112.94488 * 53.40786 * 18 2 1 41 41 H 1.09005 * 113.76590 * 336.35225 * 19 18 2 42 42 H 1.08996 * 113.77245 * 107.73997 * 19 18 2 43 43 H 0.97007 * 120.00401 * 179.97438 * 24 23 21 44 44 H 1.09002 * 113.76683 * 221.14723 * 29 20 19 45 45 H 1.09003 * 113.87253 * 89.76889 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8575 1.1606 -2.4118 7 6 2.6402 -0.7168 -3.5671 8 6 2.9784 -2.0743 -3.5253 9 6 3.4338 -2.6891 -4.6743 10 7 3.5524 -2.0169 -5.8024 11 6 3.2451 -0.7336 -5.8885 12 7 3.3903 -0.0685 -7.1101 13 6 3.7488 -0.6321 -8.3081 14 6 3.7644 0.3610 -9.2169 15 7 3.4349 1.5032 -8.5955 16 6 3.2084 1.2598 -7.3336 17 6 2.7795 -0.0390 -4.7794 18 6 2.0400 -0.7213 1.2492 19 6 1.9744 0.1328 2.5283 20 7 3.3098 -0.4180 2.8416 21 6 4.0195 -0.6146 3.9961 22 1 5.0066 -1.0506 3.9556 23 6 3.4698 -0.2533 5.2186 24 7 2.2669 0.2785 5.2679 25 14 4.4376 -0.5221 6.7936 26 1 5.7079 0.2443 6.7309 27 1 3.6355 -0.0558 7.9531 28 1 4.7388 -1.9679 6.9489 29 6 3.5700 -0.6731 1.4115 30 1 -0.3634 0.5127 -0.8906 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 2.2489 -1.6318 -1.1526 34 1 2.8883 -2.6324 -2.6051 35 1 3.6968 -3.7362 -4.6488 36 1 3.9731 -1.6730 -8.4883 37 1 4.0059 0.2569 -10.2643 38 1 2.9245 1.9911 -6.5913 39 1 2.5292 1.0091 -4.8539 40 1 1.6175 -1.7193 1.3658 41 1 1.9751 1.2065 2.3401 42 1 1.1954 -0.1777 3.2245 43 1 1.8827 0.5305 6.1222 44 1 4.0627 -1.6259 1.2178 45 1 4.0407 0.1622 0.8929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970890962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:51 Heat of formation + Delta-G solvation = 112.060504 kcal Electronic energy + Delta-G solvation = -28182.239412 eV Core-core repulsion = 24202.479127 eV Total energy + Delta-G solvation = -3979.760285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.42344 -41.72594 -40.59960 -39.53637 -36.32773 -35.42291 -34.26449 -33.91579 -31.93236 -31.06225 -30.32897 -29.32343 -26.80124 -26.12238 -25.52800 -25.22761 -23.32965 -22.48985 -21.92139 -21.51685 -20.92394 -19.80983 -18.77993 -18.27055 -17.73286 -17.06825 -16.93164 -16.87256 -16.65258 -16.18637 -15.92014 -15.79117 -15.29280 -14.99995 -14.97171 -14.89490 -14.85455 -14.63008 -14.41571 -14.05335 -13.42284 -13.25722 -13.15137 -13.06821 -12.94611 -12.65652 -12.42936 -12.06038 -11.91400 -11.81309 -11.63524 -11.39691 -11.26760 -11.20067 -11.17443 -10.85126 -10.82870 -10.14900 -9.93589 -9.55050 -8.91175 -7.90239 -5.23262 -0.63327 -0.37184 1.05504 1.29920 1.45928 1.48823 1.54957 1.78034 1.91708 2.03086 2.47803 2.66344 3.14361 3.30216 3.31104 3.39739 3.46423 3.61848 3.72976 3.77284 3.80543 3.96707 4.17482 4.26354 4.33333 4.44986 4.47108 4.52631 4.58906 4.63159 4.78711 4.81093 4.84460 4.87943 4.97047 5.03384 5.08220 5.26309 5.27166 5.32322 5.44475 5.56004 5.63613 5.66495 5.95247 6.00045 6.43786 6.56766 6.88994 6.92718 7.07603 7.61878 8.57034 9.26459 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023931 B = 0.001939 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.744192 B =14435.250425 C =14715.971200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.064 0.936 4 N -0.692 5.692 5 C 0.558 3.442 6 O -0.567 6.567 7 C -0.065 4.065 8 C -0.132 4.132 9 C 0.139 3.861 10 N -0.497 5.497 11 C 0.327 3.673 12 N -0.416 5.416 13 C -0.030 4.030 14 C -0.042 4.042 15 N -0.510 5.510 16 C 0.188 3.812 17 C -0.133 4.133 18 C -0.107 4.107 19 C 0.169 3.831 20 N -0.644 5.644 21 C -0.236 4.236 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.977 3.023 26 H -0.281 1.281 27 H -0.295 1.295 28 H -0.273 1.273 29 C 0.126 3.874 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.417 0.583 34 H 0.185 0.815 35 H 0.215 0.785 36 H 0.200 0.800 37 H 0.198 0.802 38 H 0.230 0.770 39 H 0.152 0.848 40 H 0.111 0.889 41 H 0.010 0.990 42 H 0.047 0.953 43 H 0.248 0.752 44 H 0.066 0.934 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 -9.596 -24.433 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.057 3.943 3 H 0.082 0.918 4 N -0.344 5.344 5 C 0.344 3.656 6 O -0.447 6.447 7 C -0.076 4.076 8 C -0.153 4.153 9 C -0.019 4.019 10 N -0.209 5.209 11 C 0.101 3.899 12 N -0.098 5.098 13 C -0.160 4.160 14 C -0.186 4.186 15 N -0.228 5.228 16 C -0.094 4.094 17 C -0.156 4.156 18 C -0.127 4.127 19 C 0.043 3.957 20 N -0.371 5.371 21 C -0.364 4.364 22 H 0.101 0.899 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.805 3.195 26 H -0.208 1.208 27 H -0.222 1.222 28 H -0.199 1.199 29 C 0.002 3.998 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.202 0.798 35 H 0.232 0.768 36 H 0.217 0.783 37 H 0.215 0.785 38 H 0.247 0.753 39 H 0.169 0.831 40 H 0.129 0.871 41 H 0.028 0.972 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.494 -8.457 -25.197 26.583 hybrid contribution 0.311 -0.076 2.245 2.268 sum -0.183 -8.533 -22.952 24.487 Atomic orbital electron populations 1.22058 0.93833 1.03265 1.02005 1.20829 0.94839 0.96053 0.82576 0.91769 1.45779 1.65465 1.14812 1.08308 1.18304 0.77666 0.86093 0.83537 1.90795 1.51448 1.17090 1.85344 1.20136 0.99462 0.95229 0.92796 1.22818 0.97119 0.92862 1.02462 1.23310 0.92228 1.01438 0.84921 1.66934 1.16707 1.06202 1.31099 1.18057 0.97651 0.89762 0.84473 1.43234 1.50791 1.09061 1.06708 1.23269 1.07069 1.01948 0.83678 1.22867 1.06598 0.87718 1.01446 1.70351 1.18282 1.29296 1.04845 1.25851 1.04332 0.83347 0.95844 1.21643 1.00485 1.02461 0.90997 1.23466 0.95988 1.00545 0.92722 1.22151 0.88244 0.93724 0.91625 1.46413 1.17314 1.72102 1.01245 1.19383 0.98795 1.34035 0.84185 0.89873 1.25614 0.98140 1.01652 1.00666 1.69978 1.16866 1.48675 1.24665 0.85181 0.77409 0.78139 0.78780 1.20752 1.22168 1.19856 1.22706 0.94799 0.98639 0.83701 0.92851 0.90379 0.91805 0.74436 0.79808 0.76841 0.78347 0.78544 0.75336 0.83059 0.87096 0.97207 0.93501 0.94266 0.91555 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.44 71.98 0.68 -2.92 16 2 C 0.16 4.19 2.29 44.99 0.10 4.29 16 3 H 0.06 2.07 7.48 -2.39 -0.02 2.05 16 4 N -0.69 -13.12 4.90 -445.12 -2.18 -15.30 16 5 C 0.56 12.31 7.76 86.88 0.67 12.99 16 6 O -0.57 -17.41 16.10 -3.76 -0.06 -17.47 16 7 C -0.06 -1.06 5.91 -19.90 -0.12 -1.18 16 8 C -0.13 -1.17 9.61 22.64 0.22 -0.95 16 9 C 0.14 1.20 11.17 84.64 0.95 2.14 16 10 N -0.50 -7.55 9.87 -192.95 -1.90 -9.45 16 11 C 0.33 5.85 7.50 132.77 1.00 6.85 16 12 N -0.42 -7.87 2.98 -355.90 -1.06 -8.93 16 13 C -0.03 -0.52 11.17 83.03 0.93 0.41 16 14 C -0.04 -0.77 11.85 83.51 0.99 0.22 16 15 N -0.51 -11.54 11.24 -199.68 -2.24 -13.79 16 16 C 0.19 3.66 11.89 179.98 2.14 5.80 16 17 C -0.13 -2.38 9.07 22.76 0.21 -2.17 16 18 C -0.11 -3.30 3.35 -10.14 -0.03 -3.34 16 19 C 0.17 7.53 6.98 86.44 0.60 8.13 16 20 N -0.64 -31.56 3.70 -716.13 -2.65 -34.21 16 21 C -0.24 -12.88 10.70 84.03 0.90 -11.98 16 22 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 23 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 24 N -0.95 -56.56 11.39 21.65 0.25 -56.31 16 25 Si 0.98 44.88 29.55 68.60 2.03 46.91 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 C 0.13 4.50 8.37 86.48 0.72 5.22 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.63 8.09 -2.39 -0.02 1.62 16 33 H 0.42 4.88 6.74 -92.70 -0.62 4.25 16 34 H 0.18 0.33 6.53 -2.91 -0.02 0.32 16 35 H 0.22 0.10 8.06 -2.91 -0.02 0.07 16 36 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.23 3.23 7.07 -2.91 -0.02 3.21 16 39 H 0.15 2.73 6.46 -2.91 -0.02 2.71 16 40 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.01 0.48 8.03 -2.38 -0.02 0.46 16 42 H 0.05 2.35 7.17 -2.39 -0.02 2.33 16 43 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.03 1.13 8.10 -2.39 -0.02 1.11 16 Total: -1.00 -78.81 382.17 2.99 -75.82 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.40 Total: 12.55 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 10.42 Total: 20.19 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -9.80 Total: -138.00 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.06 Total: -17.47 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -78.81 2.99 -75.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970890962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.876 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds