Wall clock time and date at job start Wed Apr 1 2020 00:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 N 1.46496 * 109.47033 * 119.99832 * 2 1 3 5 5 C 1.34774 * 120.00080 * 274.99738 * 4 2 1 6 6 O 1.21659 * 120.00000 * 0.02562 * 5 4 2 7 7 C 1.46939 * 120.00048 * 179.72546 * 5 4 2 8 8 N 1.37119 * 127.34400 * 6.12321 * 7 5 4 9 9 H 0.96996 * 125.90132 * 359.97438 * 8 7 5 10 10 N 1.28613 * 108.19062 * 179.97438 * 8 7 5 11 11 N 1.28452 * 111.22332 * 359.97438 * 10 8 7 12 12 C 1.34175 * 109.40258 * 359.76557 * 11 10 8 13 13 C 1.48194 * 127.06563 * 180.23810 * 12 11 10 14 14 C 1.39439 * 120.12931 * 42.38098 * 13 12 11 15 15 C 1.37988 * 119.86588 * 179.74803 * 14 13 12 16 16 C 1.38345 * 120.13119 * 0.53555 * 15 14 13 17 17 C 1.38338 * 120.25936 * 359.74232 * 16 15 14 18 18 C 1.37988 * 120.13567 * 359.97396 * 17 16 15 19 19 C 1.53005 * 109.47170 * 239.99817 * 2 1 3 20 20 C 1.53939 * 113.74389 * 158.73991 * 19 2 1 21 21 N 1.47811 * 86.03750 * 222.08847 * 20 19 2 22 22 C 1.36944 * 134.45233 * 204.64445 * 21 20 19 23 23 H 1.07995 * 119.99713 * 179.85936 * 22 21 20 24 24 C 1.38816 * 119.99923 * 359.86905 * 22 21 20 25 25 N 1.31608 * 119.99957 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99587 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47054 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47293 * 119.99660 * 26 24 22 29 29 H 1.48500 * 109.46909 * 239.99560 * 26 24 22 30 30 C 1.47579 * 91.05395 * 24.54875 * 21 20 19 31 31 H 1.08997 * 109.46918 * 300.00480 * 1 2 3 32 32 H 1.08999 * 109.46741 * 60.00288 * 1 2 3 33 33 H 1.08997 * 109.46867 * 179.97438 * 1 2 3 34 34 H 0.97003 * 120.00107 * 95.00342 * 4 2 1 35 35 H 1.08006 * 120.06619 * 0.02562 * 14 13 12 36 36 H 1.07993 * 119.93562 * 180.27272 * 15 14 13 37 37 H 1.07995 * 119.86791 * 179.76564 * 16 15 14 38 38 H 1.08006 * 119.93286 * 180.02562 * 17 16 15 39 39 H 1.08001 * 120.06973 * 180.02562 * 18 17 16 40 40 H 1.08995 * 112.94284 * 290.33725 * 19 2 1 41 41 H 1.09007 * 113.76801 * 336.35040 * 20 19 2 42 42 H 1.08995 * 113.77036 * 107.74329 * 20 19 2 43 43 H 0.97001 * 120.00005 * 180.02562 * 25 24 22 44 44 H 1.08990 * 113.76846 * 221.15802 * 30 21 20 45 45 H 1.09003 * 113.86881 * 89.76378 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8574 1.1621 2.4118 7 6 2.6311 -0.7123 3.5583 8 7 3.1011 -1.9976 3.6437 9 1 3.1756 -2.6260 2.9086 10 7 3.4260 -2.2259 4.8670 11 7 3.2113 -1.1967 5.6050 12 6 2.7166 -0.2031 4.8511 13 6 2.3359 1.1561 5.3027 14 6 3.1496 1.8499 6.1975 15 6 2.7926 3.1173 6.6103 16 6 1.6242 3.6952 6.1468 17 6 0.8100 3.0094 5.2634 18 6 1.1595 1.7438 4.8389 19 6 2.0401 -0.7213 -1.2493 20 6 3.4847 -0.3522 -1.6317 21 7 2.9978 -0.3177 -3.0269 22 6 3.5875 -0.4758 -4.2527 23 1 2.9927 -0.4039 -5.1513 24 6 4.9496 -0.7285 -4.3402 25 7 5.6744 -0.8157 -3.2451 26 14 5.7541 -0.9434 -6.0123 27 1 4.7289 -0.7995 -7.0770 28 1 6.8043 0.0908 -6.1930 29 1 6.3684 -2.2927 -6.0963 30 6 1.6213 -0.0472 -2.5685 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2491 -1.6317 1.1526 35 1 4.0599 1.3981 6.5632 36 1 3.4243 3.6574 7.2998 37 1 1.3470 4.6858 6.4756 38 1 -0.1008 3.4658 4.9045 39 1 0.5233 1.2095 4.1489 40 1 1.8528 -1.7948 -1.2263 41 1 3.8047 0.6190 -1.2540 42 1 4.2070 -1.1448 -1.4366 43 1 6.6263 -0.9920 -3.3063 44 1 0.8587 -0.5970 -3.1199 45 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970930474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:47 Heat of formation + Delta-G solvation = 139.129399 kcal Electronic energy + Delta-G solvation = -28945.465334 eV Core-core repulsion = 24966.878844 eV Total energy + Delta-G solvation = -3978.586490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.49602 -39.92421 -39.04092 -38.14950 -35.17273 -34.04700 -32.75886 -32.21810 -30.98599 -30.71237 -29.49602 -27.63179 -25.38841 -24.65115 -23.97673 -23.76518 -22.53475 -22.15620 -21.06502 -20.64682 -19.78577 -18.68462 -17.23515 -16.91778 -16.63921 -16.58936 -16.23490 -15.41477 -15.02591 -14.97087 -14.70924 -14.59300 -13.92657 -13.81076 -13.67039 -13.50190 -13.16364 -12.98541 -12.58739 -12.44327 -12.28357 -11.81276 -11.63978 -11.47309 -11.41834 -11.38390 -11.21513 -10.99932 -10.93601 -10.82271 -10.49770 -10.31234 -9.96344 -9.89881 -9.87248 -9.53012 -9.11454 -8.93526 -8.88124 -8.57521 -6.96243 -5.84614 -3.16981 0.44495 1.17981 1.39421 2.12393 2.13034 2.84590 2.91357 3.33618 3.39249 3.41736 3.71018 3.92383 4.26809 4.37718 4.57530 4.75236 4.89640 4.95473 4.98923 5.04090 5.10885 5.14601 5.28468 5.42301 5.46981 5.50463 5.54959 5.61052 5.78571 5.84360 5.87014 5.97675 6.06394 6.19807 6.26019 6.28565 6.37557 6.39477 6.44058 6.46434 6.51407 6.61850 6.87806 7.12208 7.23093 7.25523 7.46083 7.89514 7.90306 7.99789 8.97000 9.63470 10.51082 11.32511 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.002512 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.643944 B =11143.457658 C =11574.449503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.094 0.906 4 N -0.710 5.710 5 C 0.591 3.409 6 O -0.504 6.504 7 C -0.055 4.055 8 N -0.369 5.369 9 H 0.454 0.546 10 N -0.046 5.046 11 N -0.257 5.257 12 C 0.097 3.903 13 C -0.022 4.022 14 C -0.084 4.084 15 C -0.130 4.130 16 C -0.107 4.107 17 C -0.125 4.125 18 C -0.054 4.054 19 C -0.149 4.149 20 C 0.170 3.830 21 N -0.612 5.612 22 C -0.223 4.223 23 H 0.081 0.919 24 C -0.008 4.008 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.290 1.290 30 C 0.132 3.868 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.394 0.606 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.071 0.929 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.499 1.697 17.872 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.112 0.888 4 N -0.360 5.360 5 C 0.374 3.626 6 O -0.377 6.377 7 C -0.190 4.190 8 N -0.095 5.095 9 H 0.302 0.698 10 N -0.028 5.028 11 N -0.123 5.123 12 C -0.043 4.043 13 C -0.024 4.024 14 C -0.103 4.103 15 C -0.148 4.148 16 C -0.125 4.125 17 C -0.144 4.144 18 C -0.073 4.073 19 C -0.169 4.169 20 C 0.044 3.956 21 N -0.338 5.338 22 C -0.351 4.351 23 H 0.098 0.902 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.742 3.258 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.217 1.217 30 C 0.005 3.995 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.227 0.773 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.889 1.531 18.706 21.214 hybrid contribution 0.496 -0.326 -2.264 2.341 sum -9.393 1.205 16.441 18.974 Atomic orbital electron populations 1.22141 0.95207 1.01939 1.02454 1.21229 0.93737 0.97756 0.82511 0.88830 1.46038 1.66609 1.13680 1.09708 1.16629 0.78500 0.86371 0.81149 1.90901 1.49363 1.13806 1.83588 1.22661 1.11327 0.86904 0.98107 1.45414 1.41983 1.11437 1.10669 0.69833 1.78084 1.16463 1.20545 0.87681 1.75230 1.15365 0.96524 1.25193 1.20790 1.00349 0.95098 0.88045 1.17511 0.96254 0.89238 0.99436 1.21143 0.99002 0.94451 0.95696 1.21011 0.97425 0.95286 1.01109 1.21251 0.94599 0.99657 0.97026 1.21024 1.00320 0.94730 0.98282 1.21127 0.94912 0.95102 0.96165 1.23870 1.01106 0.99673 0.92233 1.22308 0.91174 0.98572 0.83520 1.45995 1.03250 1.82583 1.01991 1.19073 0.91460 1.41606 0.82946 0.90157 1.24785 0.96044 1.02288 0.97339 1.69811 1.06070 1.55202 1.25774 0.86051 0.79327 0.77409 0.83004 1.20423 1.21695 1.21694 1.22477 0.89740 0.96681 0.90611 0.92559 0.91040 0.92656 0.77264 0.85687 0.85801 0.86056 0.85776 0.85638 0.89359 0.95532 0.91095 0.93690 0.93656 0.94641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.31 37.16 0.35 -1.43 16 2 C 0.15 2.00 2.38 -67.93 -0.16 1.83 16 3 H 0.09 1.45 7.41 -51.93 -0.39 1.07 16 4 N -0.71 -7.96 5.07 -55.03 -0.28 -8.24 16 5 C 0.59 7.49 7.55 -12.74 -0.10 7.40 16 6 O -0.50 -7.66 12.93 5.23 0.07 -7.59 16 7 C -0.05 -0.65 7.20 -81.62 -0.59 -1.24 16 8 N -0.37 -3.55 6.96 33.67 0.23 -3.32 16 9 H 0.45 2.64 8.35 -190.36 -1.59 1.05 16 10 N -0.05 -0.56 13.31 60.35 0.80 0.24 16 11 N -0.26 -3.50 12.38 33.46 0.41 -3.08 16 12 C 0.10 1.28 6.78 -82.39 -0.56 0.72 16 13 C -0.02 -0.29 5.53 -104.91 -0.58 -0.87 16 14 C -0.08 -0.97 9.78 -39.23 -0.38 -1.35 16 15 C -0.13 -1.28 10.03 -39.63 -0.40 -1.68 16 16 C -0.11 -1.02 10.04 -39.51 -0.40 -1.41 16 17 C -0.13 -1.31 10.03 -39.64 -0.40 -1.71 16 18 C -0.05 -0.66 7.68 -39.23 -0.30 -0.96 16 19 C -0.15 -2.37 3.47 -89.69 -0.31 -2.68 16 20 C 0.17 3.70 7.08 -2.84 -0.02 3.68 16 21 N -0.61 -14.97 3.70 -177.72 -0.66 -15.63 16 22 C -0.22 -6.10 10.70 -15.05 -0.16 -6.26 16 23 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 25 N -0.92 -26.67 11.39 55.49 0.63 -26.04 16 26 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 C 0.13 2.44 7.64 -2.96 -0.02 2.42 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.78 7.52 -51.93 -0.39 0.39 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.39 3.39 7.90 -40.82 -0.32 3.07 16 35 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.13 1.53 6.72 -52.49 -0.35 1.18 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.03 0.62 7.99 -51.93 -0.41 0.21 16 42 H 0.07 1.71 7.17 -51.93 -0.37 1.34 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -33.77 379.41 -9.39 -43.16 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.18 Total: 1.92 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -4.13 Total: -3.86 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 1.15 Total: -56.07 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.07 Total: -7.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.77 -9.39 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970930474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.290 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds