Wall clock time and date at job start Wed Apr 1 2020 00:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 N 1.46496 * 109.47033 * 119.99832 * 2 1 3 5 5 C 1.34774 * 120.00080 * 274.99738 * 4 2 1 6 6 O 1.21659 * 120.00000 * 0.02562 * 5 4 2 7 7 C 1.46939 * 120.00048 * 179.72546 * 5 4 2 8 8 N 1.37119 * 127.34400 * 6.12321 * 7 5 4 9 9 H 0.96996 * 125.90132 * 359.97438 * 8 7 5 10 10 N 1.28613 * 108.19062 * 179.97438 * 8 7 5 11 11 N 1.28452 * 111.22332 * 359.97438 * 10 8 7 12 12 C 1.34175 * 109.40258 * 359.76557 * 11 10 8 13 13 C 1.48194 * 127.06563 * 180.23810 * 12 11 10 14 14 C 1.39439 * 120.12931 * 42.38098 * 13 12 11 15 15 C 1.37988 * 119.86588 * 179.74803 * 14 13 12 16 16 C 1.38345 * 120.13119 * 0.53555 * 15 14 13 17 17 C 1.38338 * 120.25936 * 359.74232 * 16 15 14 18 18 C 1.37988 * 120.13567 * 359.97396 * 17 16 15 19 19 C 1.53005 * 109.47170 * 239.99817 * 2 1 3 20 20 C 1.53939 * 113.74389 * 158.73991 * 19 2 1 21 21 N 1.47811 * 86.03750 * 222.08847 * 20 19 2 22 22 C 1.36944 * 134.45233 * 204.64445 * 21 20 19 23 23 H 1.07995 * 119.99713 * 179.85936 * 22 21 20 24 24 C 1.38816 * 119.99923 * 359.86905 * 22 21 20 25 25 N 1.31608 * 119.99957 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99587 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47054 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47293 * 119.99660 * 26 24 22 29 29 H 1.48500 * 109.46909 * 239.99560 * 26 24 22 30 30 C 1.47579 * 91.05395 * 24.54875 * 21 20 19 31 31 H 1.08997 * 109.46918 * 300.00480 * 1 2 3 32 32 H 1.08999 * 109.46741 * 60.00288 * 1 2 3 33 33 H 1.08997 * 109.46867 * 179.97438 * 1 2 3 34 34 H 0.97003 * 120.00107 * 95.00342 * 4 2 1 35 35 H 1.08006 * 120.06619 * 0.02562 * 14 13 12 36 36 H 1.07993 * 119.93562 * 180.27272 * 15 14 13 37 37 H 1.07995 * 119.86791 * 179.76564 * 16 15 14 38 38 H 1.08006 * 119.93286 * 180.02562 * 17 16 15 39 39 H 1.08001 * 120.06973 * 180.02562 * 18 17 16 40 40 H 1.08995 * 112.94284 * 290.33725 * 19 2 1 41 41 H 1.09007 * 113.76801 * 336.35040 * 20 19 2 42 42 H 1.08995 * 113.77036 * 107.74329 * 20 19 2 43 43 H 0.97001 * 120.00005 * 180.02562 * 25 24 22 44 44 H 1.08990 * 113.76846 * 221.15802 * 30 21 20 45 45 H 1.09003 * 113.86881 * 89.76378 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8574 1.1621 2.4118 7 6 2.6311 -0.7123 3.5583 8 7 3.1011 -1.9976 3.6437 9 1 3.1756 -2.6260 2.9086 10 7 3.4260 -2.2259 4.8670 11 7 3.2113 -1.1967 5.6050 12 6 2.7166 -0.2031 4.8511 13 6 2.3359 1.1561 5.3027 14 6 3.1496 1.8499 6.1975 15 6 2.7926 3.1173 6.6103 16 6 1.6242 3.6952 6.1468 17 6 0.8100 3.0094 5.2634 18 6 1.1595 1.7438 4.8389 19 6 2.0401 -0.7213 -1.2493 20 6 3.4847 -0.3522 -1.6317 21 7 2.9978 -0.3177 -3.0269 22 6 3.5875 -0.4758 -4.2527 23 1 2.9927 -0.4039 -5.1513 24 6 4.9496 -0.7285 -4.3402 25 7 5.6744 -0.8157 -3.2451 26 14 5.7541 -0.9434 -6.0123 27 1 4.7289 -0.7995 -7.0770 28 1 6.8043 0.0908 -6.1930 29 1 6.3684 -2.2927 -6.0963 30 6 1.6213 -0.0472 -2.5685 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2491 -1.6317 1.1526 35 1 4.0599 1.3981 6.5632 36 1 3.4243 3.6574 7.2998 37 1 1.3470 4.6858 6.4756 38 1 -0.1008 3.4658 4.9045 39 1 0.5233 1.2095 4.1489 40 1 1.8528 -1.7948 -1.2263 41 1 3.8047 0.6190 -1.2540 42 1 4.2070 -1.1448 -1.4366 43 1 6.6263 -0.9920 -3.3063 44 1 0.8587 -0.5970 -3.1199 45 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970930474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:46 Heat of formation + Delta-G solvation = 116.266255 kcal Electronic energy + Delta-G solvation = -28946.456755 eV Core-core repulsion = 24966.878844 eV Total energy + Delta-G solvation = -3979.577910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.43285 -41.05276 -39.91626 -39.55151 -36.37982 -35.03301 -34.18795 -33.58691 -31.90516 -31.74832 -30.43133 -29.35007 -26.76318 -25.95601 -25.41743 -24.68625 -23.58675 -23.11582 -22.23691 -21.64695 -21.02019 -19.85901 -18.77682 -18.12582 -17.68257 -17.57174 -17.23246 -16.92144 -16.28156 -16.06562 -15.76685 -15.68505 -15.54757 -14.96415 -14.68404 -14.56552 -14.29293 -14.07491 -13.83825 -13.45264 -13.36249 -13.26255 -13.09289 -12.92739 -12.73011 -12.58335 -12.53640 -12.16916 -12.06879 -11.98982 -11.81097 -11.75837 -11.55060 -11.33503 -11.17385 -10.89033 -10.83492 -10.19307 -9.75780 -9.43339 -8.92408 -7.92485 -5.25019 -0.48400 0.31016 0.57892 1.17702 1.28069 1.44289 1.45201 1.55107 1.85596 1.91658 2.45846 2.87562 3.04083 3.28822 3.33006 3.38913 3.63013 3.76933 3.85719 3.93441 4.13718 4.16896 4.28376 4.29680 4.43331 4.46615 4.60099 4.65988 4.74338 4.75000 4.81193 4.86779 5.01712 5.05852 5.07096 5.18856 5.24973 5.35404 5.37119 5.53933 5.55946 5.58636 5.62475 5.65081 5.65320 5.93005 6.10148 6.29230 6.91189 6.92323 7.04419 7.60230 8.55222 9.24330 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.002512 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.643944 B =11143.457658 C =11574.449503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.163 3.837 3 H 0.070 0.930 4 N -0.700 5.700 5 C 0.596 3.404 6 O -0.529 6.529 7 C -0.057 4.057 8 N -0.345 5.345 9 H 0.470 0.530 10 N -0.051 5.051 11 N -0.280 5.280 12 C 0.088 3.912 13 C -0.047 4.047 14 C -0.099 4.099 15 C -0.131 4.131 16 C -0.105 4.105 17 C -0.133 4.133 18 C -0.068 4.068 19 C -0.109 4.109 20 C 0.165 3.835 21 N -0.646 5.646 22 C -0.231 4.231 23 H 0.084 0.916 24 C -0.069 4.069 25 N -0.953 5.953 26 Si 0.975 3.025 27 H -0.264 1.264 28 H -0.296 1.296 29 H -0.291 1.291 30 C 0.130 3.870 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.409 0.591 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.004 0.996 42 H 0.042 0.958 43 H 0.247 0.753 44 H 0.065 0.935 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.176 1.753 17.938 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.058 3.942 3 H 0.088 0.912 4 N -0.352 5.352 5 C 0.379 3.621 6 O -0.403 6.403 7 C -0.193 4.193 8 N -0.074 5.074 9 H 0.322 0.678 10 N -0.032 5.032 11 N -0.145 5.145 12 C -0.052 4.052 13 C -0.049 4.049 14 C -0.118 4.118 15 C -0.149 4.149 16 C -0.124 4.124 17 C -0.151 4.151 18 C -0.087 4.087 19 C -0.129 4.129 20 C 0.040 3.960 21 N -0.372 5.372 22 C -0.360 4.360 23 H 0.102 0.898 24 C -0.261 4.261 25 N -0.603 5.603 26 Si 0.804 3.196 27 H -0.189 1.189 28 H -0.224 1.224 29 H -0.218 1.218 30 C 0.005 3.995 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.245 0.755 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.022 0.978 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.605 1.550 18.763 22.117 hybrid contribution 0.983 -0.290 -2.267 2.488 sum -10.622 1.260 16.497 19.661 Atomic orbital electron populations 1.22071 0.92756 1.03332 1.02774 1.20954 0.95367 0.96099 0.81783 0.91201 1.45850 1.66223 1.14321 1.08761 1.16616 0.78078 0.86004 0.81417 1.90891 1.50476 1.14970 1.84000 1.22452 1.11849 0.87538 0.97468 1.45372 1.40451 1.11010 1.10607 0.67833 1.78014 1.16539 1.20324 0.88337 1.75215 1.16415 0.96962 1.25897 1.21034 1.00241 0.95412 0.88505 1.17729 0.97106 0.89489 1.00553 1.21312 0.99146 0.95405 0.95960 1.21358 0.97857 0.94660 1.01004 1.21631 0.93960 1.00707 0.96053 1.21334 1.01215 0.94210 0.98296 1.21180 0.94906 0.96002 0.96622 1.23465 0.96071 1.00742 0.92594 1.22217 0.94073 0.96566 0.83188 1.46443 1.06007 1.82810 1.01936 1.19469 0.91860 1.40111 0.84512 0.89797 1.25591 0.96834 1.03130 1.00590 1.69994 1.05747 1.56908 1.27607 0.85053 0.78246 0.76729 0.79584 1.18852 1.22379 1.21797 1.22688 0.87555 0.97678 0.91546 0.92505 0.90521 0.90704 0.75524 0.85687 0.83270 0.83091 0.83933 0.86324 0.87385 0.97812 0.93950 0.94437 0.91677 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.31 71.98 0.67 -2.27 16 2 C 0.16 4.02 2.38 44.99 0.11 4.13 16 3 H 0.07 2.13 7.41 -2.39 -0.02 2.12 16 4 N -0.70 -14.73 5.07 -446.26 -2.26 -17.00 16 5 C 0.60 14.78 7.55 86.52 0.65 15.43 16 6 O -0.53 -16.06 12.93 -4.22 -0.05 -16.11 16 7 C -0.06 -1.34 7.20 40.83 0.29 -1.05 16 8 N -0.34 -6.34 6.96 -47.38 -0.33 -6.67 16 9 H 0.47 4.78 8.35 -219.93 -1.84 2.94 16 10 N -0.05 -1.20 13.31 37.02 0.49 -0.71 16 11 N -0.28 -7.65 12.38 -48.05 -0.60 -8.25 16 12 C 0.09 2.35 6.78 41.67 0.28 2.63 16 13 C -0.05 -1.21 5.53 -20.05 -0.11 -1.33 16 14 C -0.10 -2.29 9.78 22.50 0.22 -2.07 16 15 C -0.13 -2.40 10.03 22.24 0.22 -2.17 16 16 C -0.11 -1.80 10.04 22.32 0.22 -1.58 16 17 C -0.13 -2.63 10.03 22.23 0.22 -2.41 16 18 C -0.07 -1.65 7.68 22.50 0.17 -1.48 16 19 C -0.11 -3.30 3.47 -10.13 -0.04 -3.33 16 20 C 0.16 7.29 7.08 86.44 0.61 7.91 16 21 N -0.65 -31.47 3.70 -716.17 -2.65 -34.12 16 22 C -0.23 -12.61 10.70 84.03 0.90 -11.71 16 23 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 24 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 25 N -0.95 -56.56 11.39 21.65 0.25 -56.32 16 26 Si 0.98 45.07 29.55 68.60 2.03 47.10 16 27 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 29 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 30 C 0.13 4.61 7.64 86.49 0.66 5.27 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.44 7.52 -2.39 -0.02 1.42 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.41 6.20 7.90 -92.71 -0.73 5.47 16 35 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.12 2.94 6.72 -2.91 -0.02 2.92 16 40 H 0.11 2.91 8.14 -2.39 -0.02 2.90 16 41 H 0.00 0.20 7.99 -2.38 -0.02 0.18 16 42 H 0.04 2.10 7.17 -2.39 -0.02 2.08 16 43 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 Total: -1.00 -74.83 379.41 0.91 -73.92 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -1.52 Total: 15.55 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 5.56 Total: 2.60 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -5.10 Total: -123.07 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.05 Total: -16.11 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -74.83 0.91 -73.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970930474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.189 kcal (2) G-P(sol) polarization free energy of solvation -74.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds