Wall clock time and date at job start Wed Apr 1 2020 00:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46983 * 2 1 4 4 N 1.46497 * 109.47216 * 239.99773 * 2 1 3 5 5 C 1.34773 * 120.00116 * 84.99624 * 4 2 1 6 6 O 1.21653 * 119.99987 * 0.02562 * 5 4 2 7 7 C 1.46932 * 120.00145 * 180.02562 * 5 4 2 8 8 N 1.37118 * 127.34719 * 5.79010 * 7 5 4 9 9 H 0.96998 * 125.90342 * 359.97438 * 8 7 5 10 10 N 1.28615 * 108.19045 * 180.27276 * 8 7 5 11 11 N 1.28448 * 111.22760 * 359.75144 * 10 8 7 12 12 C 1.34179 * 109.39821 * 359.97438 * 11 10 8 13 13 C 1.48200 * 127.06146 * 179.97438 * 12 11 10 14 14 C 1.39441 * 120.12533 * 43.86667 * 13 12 11 15 15 C 1.37993 * 119.86309 * 180.22921 * 14 13 12 16 16 C 1.38333 * 120.13380 * 0.06423 * 15 14 13 17 17 C 1.38344 * 120.26133 * 359.95906 * 16 15 14 18 18 C 1.37990 * 120.13196 * 359.97438 * 17 16 15 19 19 C 1.52999 * 109.47054 * 119.99757 * 2 1 3 20 20 C 1.53943 * 113.74308 * 281.86765 * 19 2 1 21 21 N 1.47583 * 86.11850 * 222.04554 * 20 19 2 22 22 C 1.36936 * 134.49742 * 204.63649 * 21 20 19 23 23 H 1.08001 * 119.99853 * 183.51939 * 22 21 20 24 24 C 1.38811 * 119.99913 * 3.52493 * 22 21 20 25 25 N 1.31618 * 119.99822 * 5.84291 * 24 22 21 26 26 Si 1.86796 * 120.00274 * 185.84744 * 24 22 21 27 27 H 1.48495 * 109.47139 * 94.94950 * 26 24 22 28 28 H 1.48494 * 109.47356 * 214.95441 * 26 24 22 29 29 H 1.48509 * 109.47072 * 334.95336 * 26 24 22 30 30 C 1.47588 * 91.01068 * 24.63676 * 21 20 19 31 31 H 1.09006 * 109.46974 * 304.23183 * 1 2 3 32 32 H 1.08994 * 109.47146 * 64.23037 * 1 2 3 33 33 H 1.09001 * 109.47279 * 184.23047 * 1 2 3 34 34 H 0.97002 * 119.99856 * 265.00397 * 4 2 1 35 35 H 1.08007 * 120.06730 * 0.25201 * 14 13 12 36 36 H 1.08001 * 119.93057 * 180.02562 * 15 14 13 37 37 H 1.07998 * 119.87089 * 179.97438 * 16 15 14 38 38 H 1.08006 * 119.93415 * 180.02562 * 17 16 15 39 39 H 1.07998 * 120.06331 * 180.02562 * 18 17 16 40 40 H 1.09009 * 112.94404 * 53.59652 * 19 2 1 41 41 H 1.09004 * 113.77035 * 336.34291 * 20 19 2 42 42 H 1.09000 * 113.77576 * 107.74917 * 20 19 2 43 43 H 0.97001 * 119.99894 * 180.02562 * 25 24 22 44 44 H 1.09001 * 113.76915 * 221.06051 * 30 21 20 45 45 H 1.08999 * 113.77055 * 89.66707 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8581 1.1621 -2.4117 7 6 2.6363 -0.7112 -3.5569 8 7 2.8989 -2.0498 -3.6955 9 1 2.7939 -2.7244 -3.0064 10 7 3.3145 -2.2554 -4.8952 11 7 3.3456 -1.1630 -5.5701 12 6 2.9291 -0.1490 -4.7964 13 6 2.8119 1.2777 -5.1801 14 6 2.2566 1.6282 -6.4102 15 6 2.1545 2.9580 -6.7641 16 6 2.6029 3.9425 -5.9019 17 6 3.1552 3.6007 -4.6803 18 6 3.2614 2.2744 -4.3149 19 6 2.0400 -0.7212 1.2493 20 6 1.9734 0.1326 2.5285 21 7 3.3065 -0.4162 2.8440 22 6 4.0149 -0.6120 3.9994 23 1 5.0248 -0.9923 3.9557 24 6 3.4350 -0.3219 5.2267 25 7 2.1686 0.0312 5.2891 26 14 4.4518 -0.4325 6.7898 27 1 4.9910 0.9098 7.1255 28 1 3.5965 -0.9152 7.9036 29 1 5.5764 -1.3800 6.5827 30 6 3.5696 -0.6692 1.4140 31 1 -0.3633 0.5781 0.8497 32 1 -0.3633 0.4468 -0.9254 33 1 -0.3634 -1.0249 0.0758 34 1 2.2490 -1.6318 -1.1525 35 1 1.9068 0.8604 -7.0845 36 1 1.7242 3.2308 -7.7164 37 1 2.5213 4.9820 -6.1833 38 1 3.5033 4.3737 -4.0111 39 1 3.6923 2.0089 -3.3609 40 1 1.6199 -1.7205 1.3643 41 1 1.9736 1.2064 2.3406 42 1 1.1943 -0.1786 3.2244 43 1 1.7634 0.2343 6.1467 44 1 4.0650 -1.6205 1.2200 45 1 4.0388 0.1689 0.8986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970930475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:50 Heat of formation + Delta-G solvation = 139.254756 kcal Electronic energy + Delta-G solvation = -28907.820395 eV Core-core repulsion = 24929.239341 eV Total energy + Delta-G solvation = -3978.581054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.55430 -39.96215 -39.06670 -38.15026 -35.19356 -34.09715 -32.79470 -32.20197 -31.00574 -30.77959 -29.54389 -27.59228 -25.36535 -24.68012 -24.02440 -23.80273 -22.54663 -22.18739 -21.05973 -20.67782 -19.79149 -18.77759 -17.26695 -17.00922 -16.68884 -16.57957 -16.17138 -15.47791 -14.99230 -14.92374 -14.80691 -14.50795 -14.06833 -13.84654 -13.72200 -13.49992 -13.25464 -13.00646 -12.52210 -12.45724 -12.21569 -11.76202 -11.66506 -11.57179 -11.42208 -11.33317 -11.24458 -10.97868 -10.95197 -10.78799 -10.48691 -10.42039 -9.95363 -9.94096 -9.87509 -9.55109 -9.15710 -8.95524 -8.88809 -8.62313 -6.95446 -5.84078 -3.17800 0.39824 1.14183 1.37021 2.06176 2.07124 2.79444 2.87568 3.34114 3.39373 3.41305 3.67305 3.88603 4.21808 4.37642 4.53379 4.71076 4.87860 4.93866 4.98802 5.01598 5.02829 5.24789 5.26409 5.41240 5.43812 5.49318 5.52545 5.66928 5.80227 5.83526 5.91732 5.95666 6.08632 6.21297 6.22015 6.29577 6.34597 6.36588 6.42053 6.44932 6.48239 6.61948 6.85593 7.12125 7.20931 7.26081 7.49025 7.85595 7.91772 7.94163 8.96650 9.63365 10.50828 11.31731 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.002436 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.063045 B =11493.816386 C =12131.382023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.093 0.907 4 N -0.711 5.711 5 C 0.589 3.411 6 O -0.502 6.502 7 C -0.055 4.055 8 N -0.370 5.370 9 H 0.453 0.547 10 N -0.047 5.047 11 N -0.256 5.256 12 C 0.097 3.903 13 C -0.023 4.023 14 C -0.085 4.085 15 C -0.131 4.131 16 C -0.106 4.106 17 C -0.124 4.124 18 C -0.054 4.054 19 C -0.147 4.147 20 C 0.169 3.831 21 N -0.611 5.611 22 C -0.225 4.225 23 H 0.079 0.921 24 C -0.007 4.007 25 N -0.918 5.918 26 Si 0.911 3.089 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.124 3.876 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.393 0.607 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.090 0.910 41 H 0.027 0.973 42 H 0.083 0.917 43 H 0.254 0.746 44 H 0.039 0.961 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 0.471 -21.497 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.111 0.889 4 N -0.362 5.362 5 C 0.372 3.628 6 O -0.375 6.375 7 C -0.190 4.190 8 N -0.096 5.096 9 H 0.301 0.699 10 N -0.028 5.028 11 N -0.122 5.122 12 C -0.042 4.042 13 C -0.025 4.025 14 C -0.104 4.104 15 C -0.149 4.149 16 C -0.125 4.125 17 C -0.142 4.142 18 C -0.073 4.073 19 C -0.167 4.167 20 C 0.044 3.956 21 N -0.336 5.336 22 C -0.353 4.353 23 H 0.097 0.903 24 C -0.204 4.204 25 N -0.565 5.565 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.206 1.206 30 C -0.002 4.002 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.108 0.892 41 H 0.044 0.956 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.347 0.341 -22.221 22.347 hybrid contribution 0.252 -0.324 2.180 2.218 sum -2.095 0.018 -20.041 20.150 Atomic orbital electron populations 1.22121 0.94965 1.02128 1.02485 1.21257 0.94080 0.97598 0.82272 0.88860 1.46096 1.66615 1.13670 1.09792 1.16642 0.78555 0.86482 0.81121 1.90910 1.49105 1.13896 1.83612 1.22691 1.12719 0.84434 0.99185 1.45401 1.43507 1.08197 1.12535 0.69944 1.78083 1.14505 1.20475 0.89782 1.75240 1.17237 0.94609 1.25142 1.20805 1.00188 0.94666 0.88540 1.17501 1.02432 0.86967 0.95602 1.21118 0.97824 0.96565 0.94888 1.21003 1.01367 0.92502 1.00015 1.21259 0.97639 0.99381 0.94205 1.21059 1.00376 0.95981 0.96790 1.21147 0.96223 0.92056 0.97850 1.23905 0.97600 1.00875 0.94350 1.22291 0.90165 0.93726 0.89463 1.45859 1.16538 1.71668 0.99578 1.19008 0.96096 1.37681 0.82499 0.90333 1.24775 0.96247 1.01896 0.97435 1.69804 1.10476 1.52003 1.24244 0.86112 0.79043 0.77693 0.82989 1.21584 1.21627 1.20572 1.22556 0.92955 0.97649 0.87066 0.90752 0.92637 0.92641 0.77404 0.85783 0.85828 0.86019 0.85646 0.85602 0.89197 0.95562 0.89905 0.93578 0.94250 0.94943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.43 37.16 0.35 -1.59 16 2 C 0.15 2.00 2.29 -67.93 -0.16 1.84 16 3 H 0.09 1.42 7.48 -51.93 -0.39 1.03 16 4 N -0.71 -7.52 4.94 -55.04 -0.27 -7.79 16 5 C 0.59 7.09 7.57 -12.74 -0.10 6.99 16 6 O -0.50 -7.43 13.05 5.23 0.07 -7.36 16 7 C -0.06 -0.61 7.20 -81.62 -0.59 -1.20 16 8 N -0.37 -3.20 6.96 33.67 0.23 -2.96 16 9 H 0.45 2.08 8.35 -190.36 -1.59 0.49 16 10 N -0.05 -0.53 13.31 60.35 0.80 0.27 16 11 N -0.26 -3.33 12.38 33.46 0.41 -2.91 16 12 C 0.10 1.23 6.77 -82.39 -0.56 0.67 16 13 C -0.02 -0.29 5.50 -104.91 -0.58 -0.86 16 14 C -0.09 -0.93 9.78 -39.22 -0.38 -1.31 16 15 C -0.13 -1.23 10.03 -39.64 -0.40 -1.62 16 16 C -0.11 -1.00 10.04 -39.51 -0.40 -1.39 16 17 C -0.12 -1.32 10.03 -39.63 -0.40 -1.72 16 18 C -0.05 -0.66 7.70 -39.23 -0.30 -0.96 16 19 C -0.15 -2.36 3.36 -89.70 -0.30 -2.66 16 20 C 0.17 3.67 7.20 -2.97 -0.02 3.65 16 21 N -0.61 -14.90 3.69 -177.90 -0.66 -15.55 16 22 C -0.23 -6.15 10.69 -15.06 -0.16 -6.31 16 23 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 25 N -0.92 -26.38 11.31 55.49 0.63 -25.75 16 26 Si 0.91 21.67 29.56 -169.99 -5.02 16.65 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 C 0.12 2.30 8.37 -2.97 -0.02 2.28 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.39 3.05 7.90 -40.82 -0.32 2.72 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.13 1.62 6.85 -52.49 -0.36 1.26 16 40 H 0.09 1.39 8.14 -51.92 -0.42 0.96 16 41 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 42 H 0.08 2.01 6.90 -51.93 -0.36 1.65 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -33.39 380.69 -9.38 -42.77 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.21 Total: 1.38 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -4.11 Total: -4.48 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 1.15 Total: -54.70 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.07 Total: -7.36 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.39 -9.38 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970930475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.023 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds