Wall clock time and date at job start Wed Apr 1 2020 00:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46983 * 2 1 4 4 N 1.46497 * 109.47216 * 239.99773 * 2 1 3 5 5 C 1.34773 * 120.00116 * 84.99624 * 4 2 1 6 6 O 1.21653 * 119.99987 * 0.02562 * 5 4 2 7 7 C 1.46932 * 120.00145 * 180.02562 * 5 4 2 8 8 N 1.37118 * 127.34719 * 5.79010 * 7 5 4 9 9 H 0.96998 * 125.90342 * 359.97438 * 8 7 5 10 10 N 1.28615 * 108.19045 * 180.27276 * 8 7 5 11 11 N 1.28448 * 111.22760 * 359.75144 * 10 8 7 12 12 C 1.34179 * 109.39821 * 359.97438 * 11 10 8 13 13 C 1.48200 * 127.06146 * 179.97438 * 12 11 10 14 14 C 1.39441 * 120.12533 * 43.86667 * 13 12 11 15 15 C 1.37993 * 119.86309 * 180.22921 * 14 13 12 16 16 C 1.38333 * 120.13380 * 0.06423 * 15 14 13 17 17 C 1.38344 * 120.26133 * 359.95906 * 16 15 14 18 18 C 1.37990 * 120.13196 * 359.97438 * 17 16 15 19 19 C 1.52999 * 109.47054 * 119.99757 * 2 1 3 20 20 C 1.53943 * 113.74308 * 281.86765 * 19 2 1 21 21 N 1.47583 * 86.11850 * 222.04554 * 20 19 2 22 22 C 1.36936 * 134.49742 * 204.63649 * 21 20 19 23 23 H 1.08001 * 119.99853 * 183.51939 * 22 21 20 24 24 C 1.38811 * 119.99913 * 3.52493 * 22 21 20 25 25 N 1.31618 * 119.99822 * 5.84291 * 24 22 21 26 26 Si 1.86796 * 120.00274 * 185.84744 * 24 22 21 27 27 H 1.48495 * 109.47139 * 94.94950 * 26 24 22 28 28 H 1.48494 * 109.47356 * 214.95441 * 26 24 22 29 29 H 1.48509 * 109.47072 * 334.95336 * 26 24 22 30 30 C 1.47588 * 91.01068 * 24.63676 * 21 20 19 31 31 H 1.09006 * 109.46974 * 304.23183 * 1 2 3 32 32 H 1.08994 * 109.47146 * 64.23037 * 1 2 3 33 33 H 1.09001 * 109.47279 * 184.23047 * 1 2 3 34 34 H 0.97002 * 119.99856 * 265.00397 * 4 2 1 35 35 H 1.08007 * 120.06730 * 0.25201 * 14 13 12 36 36 H 1.08001 * 119.93057 * 180.02562 * 15 14 13 37 37 H 1.07998 * 119.87089 * 179.97438 * 16 15 14 38 38 H 1.08006 * 119.93415 * 180.02562 * 17 16 15 39 39 H 1.07998 * 120.06331 * 180.02562 * 18 17 16 40 40 H 1.09009 * 112.94404 * 53.59652 * 19 2 1 41 41 H 1.09004 * 113.77035 * 336.34291 * 20 19 2 42 42 H 1.09000 * 113.77576 * 107.74917 * 20 19 2 43 43 H 0.97001 * 119.99894 * 180.02562 * 25 24 22 44 44 H 1.09001 * 113.76915 * 221.06051 * 30 21 20 45 45 H 1.08999 * 113.77055 * 89.66707 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8581 1.1621 -2.4117 7 6 2.6363 -0.7112 -3.5569 8 7 2.8989 -2.0498 -3.6955 9 1 2.7939 -2.7244 -3.0064 10 7 3.3145 -2.2554 -4.8952 11 7 3.3456 -1.1630 -5.5701 12 6 2.9291 -0.1490 -4.7964 13 6 2.8119 1.2777 -5.1801 14 6 2.2566 1.6282 -6.4102 15 6 2.1545 2.9580 -6.7641 16 6 2.6029 3.9425 -5.9019 17 6 3.1552 3.6007 -4.6803 18 6 3.2614 2.2744 -4.3149 19 6 2.0400 -0.7212 1.2493 20 6 1.9734 0.1326 2.5285 21 7 3.3065 -0.4162 2.8440 22 6 4.0149 -0.6120 3.9994 23 1 5.0248 -0.9923 3.9557 24 6 3.4350 -0.3219 5.2267 25 7 2.1686 0.0312 5.2891 26 14 4.4518 -0.4325 6.7898 27 1 4.9910 0.9098 7.1255 28 1 3.5965 -0.9152 7.9036 29 1 5.5764 -1.3800 6.5827 30 6 3.5696 -0.6692 1.4140 31 1 -0.3633 0.5781 0.8497 32 1 -0.3633 0.4468 -0.9254 33 1 -0.3634 -1.0249 0.0758 34 1 2.2490 -1.6318 -1.1525 35 1 1.9068 0.8604 -7.0845 36 1 1.7242 3.2308 -7.7164 37 1 2.5213 4.9820 -6.1833 38 1 3.5033 4.3737 -4.0111 39 1 3.6923 2.0089 -3.3609 40 1 1.6199 -1.7205 1.3643 41 1 1.9736 1.2064 2.3406 42 1 1.1943 -0.1786 3.2244 43 1 1.7634 0.2343 6.1467 44 1 4.0650 -1.6205 1.2200 45 1 4.0388 0.1689 0.8986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970930475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:49 Heat of formation + Delta-G solvation = 116.922541 kcal Electronic energy + Delta-G solvation = -28908.788793 eV Core-core repulsion = 24929.239341 eV Total energy + Delta-G solvation = -3979.549452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.42332 -41.06923 -39.91828 -39.54866 -36.38717 -35.02656 -34.16212 -33.59340 -31.94678 -31.76433 -30.44252 -29.33401 -26.72291 -26.01100 -25.43577 -24.67735 -23.55984 -23.11542 -22.21691 -21.64134 -21.03207 -19.91647 -18.80195 -18.12654 -17.71519 -17.48927 -17.21744 -16.82640 -16.30667 -16.07772 -15.77254 -15.71113 -15.50727 -15.10118 -14.74789 -14.56022 -14.24662 -14.10846 -13.83693 -13.42963 -13.35470 -13.32292 -13.07250 -12.94370 -12.70366 -12.54928 -12.40538 -12.17384 -12.08593 -12.02971 -11.82391 -11.79046 -11.63751 -11.30546 -11.17190 -10.89315 -10.82619 -10.20790 -9.76599 -9.44725 -8.90964 -7.90884 -5.25040 -0.47394 0.31339 0.57017 1.17515 1.29084 1.44807 1.46488 1.54883 1.82526 1.93342 2.46087 2.86501 3.05407 3.27624 3.34606 3.39116 3.59240 3.80519 3.86359 3.94202 4.13148 4.16304 4.24550 4.28749 4.42235 4.44379 4.57467 4.65312 4.73792 4.75690 4.79150 4.85451 4.94382 5.04448 5.05565 5.18001 5.26128 5.32913 5.38047 5.54992 5.57247 5.58677 5.62103 5.65295 5.65705 5.96423 6.09387 6.30864 6.91685 6.93917 7.05556 7.60594 8.55503 9.24339 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.002436 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.063045 B =11493.816386 C =12131.382023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 H 0.073 0.927 4 N -0.698 5.698 5 C 0.596 3.404 6 O -0.530 6.530 7 C -0.055 4.055 8 N -0.343 5.343 9 H 0.471 0.529 10 N -0.049 5.049 11 N -0.279 5.279 12 C 0.087 3.913 13 C -0.044 4.044 14 C -0.096 4.096 15 C -0.129 4.129 16 C -0.105 4.105 17 C -0.135 4.135 18 C -0.071 4.071 19 C -0.108 4.108 20 C 0.163 3.837 21 N -0.644 5.644 22 C -0.235 4.235 23 H 0.081 0.919 24 C -0.065 4.065 25 N -0.948 5.948 26 Si 0.974 3.026 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.267 1.267 30 C 0.125 3.875 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.410 0.590 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.014 0.986 42 H 0.052 0.948 43 H 0.249 0.751 44 H 0.060 0.940 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 -0.250 -22.992 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.061 3.939 3 H 0.091 0.909 4 N -0.349 5.349 5 C 0.379 3.621 6 O -0.404 6.404 7 C -0.191 4.191 8 N -0.073 5.073 9 H 0.323 0.677 10 N -0.031 5.031 11 N -0.145 5.145 12 C -0.053 4.053 13 C -0.046 4.046 14 C -0.114 4.114 15 C -0.146 4.146 16 C -0.123 4.123 17 C -0.153 4.153 18 C -0.091 4.091 19 C -0.128 4.128 20 C 0.037 3.963 21 N -0.370 5.370 22 C -0.364 4.364 23 H 0.098 0.902 24 C -0.259 4.259 25 N -0.597 5.597 26 Si 0.803 3.197 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.192 1.192 30 C 0.000 4.000 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.247 0.753 35 H 0.148 0.852 36 H 0.170 0.830 37 H 0.168 0.832 38 H 0.155 0.845 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.216 -0.439 -23.743 23.851 hybrid contribution 0.241 -0.074 2.579 2.591 sum -1.975 -0.514 -21.165 21.263 Atomic orbital electron populations 1.22062 0.93754 1.03184 1.02158 1.20866 0.94819 0.96276 0.81905 0.90864 1.45787 1.66220 1.14378 1.08539 1.16625 0.78030 0.86047 0.81381 1.90909 1.50232 1.15231 1.84034 1.22399 1.13150 0.85137 0.98409 1.45350 1.41788 1.07820 1.12310 0.67700 1.78014 1.14542 1.20099 0.90445 1.75231 1.18323 0.94997 1.25910 1.21006 1.00247 0.94934 0.89071 1.17692 1.03423 0.87019 0.96442 1.21318 0.97928 0.97654 0.94541 1.21371 1.00436 0.91787 1.01031 1.21612 0.96399 1.00916 0.93395 1.21308 1.00566 0.95624 0.97796 1.21131 0.97345 0.93011 0.97590 1.23469 0.95878 1.00479 0.92928 1.22213 0.88538 0.93835 0.91750 1.46288 1.17578 1.71996 1.01148 1.19379 0.96389 1.36642 0.83959 0.90156 1.25573 0.97332 1.02570 1.00387 1.69983 1.11844 1.53529 1.24353 0.85125 0.77845 0.77526 0.79247 1.21844 1.21949 1.19176 1.22724 0.94858 0.98518 0.83866 0.91631 0.92546 0.90798 0.75337 0.85211 0.82997 0.83193 0.84545 0.87069 0.87550 0.96784 0.92917 0.94229 0.92184 0.94621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.43 71.98 0.68 -2.82 16 2 C 0.17 4.15 2.29 44.99 0.10 4.25 16 3 H 0.07 2.21 7.48 -2.39 -0.02 2.19 16 4 N -0.70 -13.24 4.94 -446.29 -2.21 -15.45 16 5 C 0.60 13.60 7.57 86.52 0.65 14.25 16 6 O -0.53 -15.50 13.05 -4.20 -0.05 -15.56 16 7 C -0.06 -1.16 7.20 40.83 0.29 -0.87 16 8 N -0.34 -5.23 6.96 -47.39 -0.33 -5.56 16 9 H 0.47 2.95 8.35 -219.92 -1.84 1.12 16 10 N -0.05 -1.04 13.31 37.02 0.49 -0.55 16 11 N -0.28 -7.05 12.38 -48.05 -0.60 -7.64 16 12 C 0.09 2.17 6.77 41.67 0.28 2.45 16 13 C -0.04 -1.08 5.50 -20.05 -0.11 -1.19 16 14 C -0.10 -2.01 9.78 22.50 0.22 -1.79 16 15 C -0.13 -2.16 10.03 22.23 0.22 -1.94 16 16 C -0.11 -1.77 10.04 22.32 0.22 -1.54 16 17 C -0.13 -2.80 10.03 22.24 0.22 -2.58 16 18 C -0.07 -1.78 7.70 22.50 0.17 -1.61 16 19 C -0.11 -3.30 3.36 -10.14 -0.03 -3.33 16 20 C 0.16 7.15 7.20 86.48 0.62 7.77 16 21 N -0.64 -31.40 3.69 -716.74 -2.65 -34.05 16 22 C -0.24 -12.87 10.69 84.03 0.90 -11.97 16 23 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 24 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 25 N -0.95 -55.75 11.31 21.65 0.24 -55.51 16 26 Si 0.97 44.92 29.56 68.60 2.03 46.95 16 27 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 29 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 30 C 0.13 4.46 8.37 86.48 0.72 5.18 16 31 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.41 5.01 7.90 -92.71 -0.73 4.28 16 35 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.11 2.99 6.85 -2.91 -0.02 2.97 16 40 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 41 H 0.01 0.66 8.03 -2.38 -0.02 0.64 16 42 H 0.05 2.64 6.90 -2.39 -0.02 2.62 16 43 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.04 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -73.85 380.69 1.05 -72.80 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -1.53 Total: 13.48 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.64 Total: 1.09 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -5.04 Total: -118.76 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.05 Total: -15.56 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -73.85 1.05 -72.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970930475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.723 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds