Wall clock time and date at job start Wed Apr 1 2020 00:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21543 * 120.00172 * 359.97438 * 5 4 2 7 7 C 1.47859 * 119.99754 * 179.97438 * 5 4 2 8 8 C 1.39617 * 120.11537 * 0.02562 * 7 5 4 9 9 C 1.37976 * 119.98415 * 179.97438 * 8 7 5 10 10 C 1.38257 * 120.21694 * 0.02562 * 9 8 7 11 11 C 1.38900 * 120.23095 * 0.02562 * 10 9 8 12 12 N 1.40277 * 119.99663 * 179.97438 * 11 10 9 13 13 C 1.36107 * 125.94040 * 4.71166 * 12 11 10 14 14 C 1.35373 * 106.04909 * 179.85077 * 13 12 11 15 15 N 1.33776 * 106.53685 * 0.40783 * 14 13 12 16 16 N 1.28607 * 109.05789 * 359.73816 * 15 14 13 17 17 C 1.38587 * 120.01006 * 359.70003 * 11 10 9 18 18 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 19 19 C 1.53497 * 114.20590 * 174.71570 * 18 2 1 20 20 N 1.47062 * 87.98889 * 220.34720 * 19 18 2 21 21 C 1.36934 * 136.06073 * 207.09188 * 20 19 18 22 22 H 1.08001 * 120.00026 * 6.47907 * 21 20 19 23 23 C 1.38805 * 120.00345 * 186.48472 * 21 20 19 24 24 N 1.31621 * 119.99799 * 6.26684 * 23 21 20 25 25 Si 1.86798 * 120.00357 * 186.26795 * 23 21 20 26 26 H 1.48507 * 109.47008 * 265.00931 * 25 23 21 27 27 H 1.48498 * 109.47125 * 25.00956 * 25 23 21 28 28 H 1.48499 * 109.47537 * 145.01308 * 25 23 21 29 29 C 1.47068 * 87.88330 * 27.33967 * 20 19 18 30 30 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 31 31 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 32 32 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 33 33 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 34 34 H 1.07995 * 120.00747 * 0.02562 * 8 7 5 35 35 H 1.08008 * 119.88905 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.88814 * 179.97438 * 10 9 8 37 37 H 1.08002 * 126.97653 * 0.02562 * 13 12 11 38 38 H 1.07998 * 126.72930 * 180.15033 * 14 13 12 39 39 H 1.08005 * 120.10950 * 180.27530 * 17 11 10 40 40 H 1.08994 * 113.41243 * 307.91400 * 18 2 1 41 41 H 1.09000 * 113.46682 * 105.56058 * 19 18 2 42 42 H 1.09008 * 113.52408 * 335.13690 * 19 18 2 43 43 H 0.97005 * 119.99736 * 179.97438 * 24 23 21 44 44 H 1.09006 * 113.46025 * 87.44010 * 29 20 19 45 45 H 1.09003 * 113.47098 * 217.87906 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8584 1.1610 2.4116 7 6 2.6395 -0.7156 3.5644 8 6 2.9724 -2.0702 3.5043 9 6 3.4321 -2.7180 4.6324 10 6 3.5643 -2.0302 5.8245 11 6 3.2348 -0.6827 5.8947 12 7 3.3704 0.0102 7.1068 13 6 3.8947 -0.4903 8.2588 14 6 3.8339 0.5137 9.1649 15 7 3.2779 1.5575 8.5398 16 7 3.0153 1.2282 7.3246 17 6 2.7775 -0.0212 4.7660 18 6 2.0399 -0.7212 -1.2494 19 6 3.5641 -0.6739 -1.4253 20 7 3.3396 -0.4639 -2.8634 21 6 4.0309 -0.7208 -4.0172 22 1 4.9487 -1.2889 -3.9816 23 6 3.5522 -0.2509 -5.2324 24 7 2.5037 0.5440 -5.2637 25 14 4.3961 -0.7468 -6.8234 26 1 5.3782 0.2983 -7.2094 27 1 5.1001 -2.0397 -6.6283 28 1 3.3812 -0.8930 -7.8975 29 6 2.0485 0.1492 -2.5168 30 1 -0.3633 0.5876 0.8431 31 1 -0.3633 0.4362 -0.9304 32 1 -0.3634 -1.0240 0.0874 33 1 2.2491 -1.6318 1.1524 34 1 2.8708 -2.6106 2.5748 35 1 3.6887 -3.7660 4.5843 36 1 3.9243 -2.5426 6.7044 37 1 4.2832 -1.4855 8.4171 38 1 4.1651 0.4775 10.1922 39 1 2.5250 1.0276 4.8177 40 1 1.6048 -1.7111 -1.3859 41 1 4.0570 -1.6187 -1.1962 42 1 4.0330 0.1767 -0.9304 43 1 2.1694 0.8726 -6.1130 44 1 2.1169 1.2171 -2.3095 45 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970982429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:30 Heat of formation + Delta-G solvation = 134.374111 kcal Electronic energy + Delta-G solvation = -28154.923531 eV Core-core repulsion = 24176.130836 eV Total energy + Delta-G solvation = -3978.792695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.47175 -41.52305 -40.29996 -39.38775 -36.33732 -35.73653 -34.21978 -32.95116 -32.23413 -31.59730 -30.68911 -29.38917 -26.56402 -25.92904 -25.47161 -25.25497 -23.67993 -22.62995 -22.34281 -21.48956 -20.96267 -19.77994 -18.77780 -17.87059 -17.60929 -17.53656 -17.19985 -16.86042 -16.28791 -16.11335 -15.89957 -15.78967 -15.50065 -15.13967 -14.89440 -14.82171 -14.77103 -14.15215 -14.03014 -13.46019 -13.24527 -13.08093 -13.06558 -13.03538 -12.96863 -12.70630 -12.47937 -12.40320 -12.12840 -12.05820 -12.04228 -11.87338 -11.62129 -11.15438 -10.95473 -10.86762 -10.50741 -10.32189 -10.06239 -9.76553 -8.95567 -7.94507 -5.27149 -0.56285 -0.22072 0.88931 1.20721 1.45525 1.47323 1.52192 1.56913 1.76790 2.01960 2.46416 2.68029 3.28945 3.31950 3.41541 3.45978 3.64550 3.68520 3.80799 3.92772 3.97992 4.04323 4.19965 4.23115 4.24567 4.29890 4.41945 4.54516 4.60441 4.75542 4.77840 4.81312 4.86100 4.94383 5.02009 5.05882 5.11724 5.17613 5.20763 5.24551 5.28449 5.41773 5.48027 5.50355 5.61988 5.78970 5.89488 6.51569 6.88114 7.16861 7.36720 7.57743 8.58868 9.24720 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023691 B = 0.001936 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.616217 B =14459.027451 C =14777.962608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.164 3.836 3 H 0.058 0.942 4 N -0.695 5.695 5 C 0.553 3.447 6 O -0.583 6.583 7 C -0.126 4.126 8 C -0.065 4.065 9 C -0.087 4.087 10 C -0.075 4.075 11 C 0.092 3.908 12 N -0.246 5.246 13 C -0.030 4.030 14 C -0.054 4.054 15 N -0.305 5.305 16 N -0.135 5.135 17 C -0.070 4.070 18 C -0.111 4.111 19 C 0.126 3.874 20 N -0.642 5.642 21 C -0.231 4.231 22 H 0.089 0.911 23 C -0.070 4.070 24 N -0.956 5.956 25 Si 0.982 3.018 26 H -0.290 1.290 27 H -0.262 1.262 28 H -0.293 1.293 29 C 0.168 3.832 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.417 0.583 34 H 0.168 0.832 35 H 0.193 0.807 36 H 0.184 0.816 37 H 0.250 0.750 38 H 0.231 0.769 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.066 0.934 42 H 0.024 0.976 43 H 0.249 0.751 44 H 0.007 0.993 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -15.856 28.549 32.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.059 3.941 3 H 0.076 0.924 4 N -0.346 5.346 5 C 0.341 3.659 6 O -0.464 6.464 7 C -0.130 4.130 8 C -0.084 4.084 9 C -0.105 4.105 10 C -0.095 4.095 11 C 0.001 3.999 12 N -0.034 5.034 13 C -0.178 4.178 14 C -0.211 4.211 15 N -0.170 5.170 16 N -0.112 5.112 17 C -0.091 4.091 18 C -0.130 4.130 19 C 0.001 3.999 20 N -0.367 5.367 21 C -0.359 4.359 22 H 0.107 0.893 23 C -0.263 4.263 24 N -0.604 5.604 25 Si 0.809 3.191 26 H -0.218 1.218 27 H -0.186 1.186 28 H -0.220 1.220 29 C 0.042 3.958 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.256 0.744 34 H 0.185 0.815 35 H 0.210 0.790 36 H 0.201 0.799 37 H 0.266 0.734 38 H 0.247 0.753 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.025 0.975 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.246 -13.708 27.648 30.885 hybrid contribution 0.719 -0.035 -0.889 1.144 sum 1.965 -13.743 26.759 30.146 Atomic orbital electron populations 1.22053 0.93870 1.03234 1.01918 1.20715 0.94829 0.95815 0.82761 0.92403 1.45749 1.65958 1.14698 1.08239 1.18579 0.77269 0.86078 0.83997 1.90791 1.52202 1.17806 1.85633 1.19680 1.05250 0.95857 0.92209 1.21946 0.93649 0.91281 1.01549 1.21556 0.96715 1.02488 0.89723 1.21629 0.96897 0.89105 1.01878 1.17777 1.06935 0.93015 0.82170 1.44980 1.38762 1.09472 1.10160 1.24751 1.04283 1.04846 0.83961 1.24448 1.03920 0.89013 1.03713 1.75096 1.15331 1.27392 0.99187 1.78478 1.21824 0.97436 1.13502 1.20862 0.96649 1.00498 0.91096 1.23348 0.96408 1.00530 0.92757 1.22496 0.94730 0.98704 0.84013 1.46087 1.20037 1.69468 1.01140 1.19388 1.05330 1.27335 0.83816 0.89337 1.25735 0.99735 0.99621 1.01208 1.70039 1.27671 1.37586 1.25131 0.85018 0.77089 0.78201 0.78754 1.21769 1.18595 1.21983 1.21904 0.88812 0.93413 0.91681 0.93334 0.91717 0.90050 0.74433 0.81484 0.78974 0.79924 0.73442 0.75310 0.86657 0.86389 0.91576 0.95855 0.94224 0.97549 0.94647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.47 71.98 0.68 -3.34 16 2 C 0.16 4.79 2.34 44.99 0.11 4.89 16 3 H 0.06 2.11 7.43 -2.39 -0.02 2.09 16 4 N -0.69 -15.64 4.91 -445.40 -2.19 -17.83 16 5 C 0.55 14.99 7.74 86.79 0.67 15.66 16 6 O -0.58 -21.96 16.01 -3.85 -0.06 -22.03 16 7 C -0.13 -2.50 5.87 -20.10 -0.12 -2.62 16 8 C -0.07 -0.60 9.54 22.54 0.21 -0.39 16 9 C -0.09 -0.31 10.02 22.21 0.22 -0.08 16 10 C -0.07 -0.44 9.45 22.43 0.21 -0.23 16 11 C 0.09 1.51 6.66 38.03 0.25 1.77 16 12 N -0.25 -4.71 3.56 -187.14 -0.67 -5.38 16 13 C -0.03 -0.31 10.91 83.37 0.91 0.60 16 14 C -0.05 -0.76 12.05 83.73 1.01 0.25 16 15 N -0.30 -7.79 12.39 -58.24 -0.72 -8.51 16 16 N -0.13 -3.76 12.42 37.02 0.46 -3.30 16 17 C -0.07 -1.62 9.16 22.65 0.21 -1.41 16 18 C -0.11 -3.63 3.52 -10.37 -0.04 -3.67 16 19 C 0.13 4.76 8.14 83.17 0.68 5.44 16 20 N -0.64 -32.57 3.76 -737.97 -2.78 -35.35 16 21 C -0.23 -12.84 10.73 84.03 0.90 -11.94 16 22 H 0.09 4.64 7.84 -2.91 -0.02 4.62 16 23 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 24 N -0.96 -58.43 11.80 21.65 0.26 -58.17 16 25 Si 0.98 45.41 29.56 68.60 2.03 47.44 16 26 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 29 C 0.17 7.89 6.79 83.26 0.57 8.46 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.42 6.02 6.63 -92.71 -0.61 5.40 16 34 H 0.17 0.58 6.40 -2.91 -0.02 0.56 16 35 H 0.19 -0.94 8.06 -2.91 -0.02 -0.97 16 36 H 0.18 -0.56 6.77 -2.91 -0.02 -0.58 16 37 H 0.25 -0.65 7.12 -2.91 -0.02 -0.67 16 38 H 0.23 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.12 3.55 7.29 -2.91 -0.02 3.53 16 40 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.02 0.94 8.11 -2.38 -0.02 0.92 16 43 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 44 H 0.01 0.34 8.00 -2.38 -0.02 0.32 16 45 H 0.04 1.83 7.57 -2.39 -0.02 1.81 16 Total: -1.00 -90.58 381.93 3.69 -86.89 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.41 Total: 6.36 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 6.94 Total: 9.87 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -5.64 Total: -128.53 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.03 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -90.58 3.69 -86.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970982429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.268 kcal (2) G-P(sol) polarization free energy of solvation -90.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds