Wall clock time and date at job start Wed Apr 1 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47065 * 2 1 4 4 N 1.46503 * 109.46969 * 240.00052 * 2 1 3 5 5 C 1.34786 * 119.99856 * 84.99939 * 4 2 1 6 6 O 1.21550 * 119.99922 * 0.02562 * 5 4 2 7 7 C 1.47854 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.39625 * 120.11496 * 0.02562 * 7 5 4 9 9 C 1.37969 * 119.98210 * 179.97438 * 8 7 5 10 10 C 1.38267 * 120.21816 * 0.02562 * 9 8 7 11 11 C 1.38899 * 120.22999 * 0.02562 * 10 9 8 12 12 N 1.40276 * 119.99794 * 179.97438 * 11 10 9 13 13 C 1.36115 * 125.93478 * 4.71282 * 12 11 10 14 14 C 1.35379 * 106.04613 * 179.88179 * 13 12 11 15 15 N 1.33780 * 106.53545 * 0.37562 * 14 13 12 16 16 N 1.28602 * 109.05867 * 359.75982 * 15 14 13 17 17 C 1.38587 * 120.00959 * 0.23229 * 11 10 9 18 18 C 1.52998 * 109.47113 * 120.00355 * 2 1 3 19 19 C 1.53940 * 113.73912 * 282.19664 * 18 2 1 20 20 N 1.47823 * 86.03405 * 222.08123 * 19 18 2 21 21 C 1.36935 * 134.45413 * 204.63942 * 20 19 18 22 22 H 1.08003 * 119.99163 * 182.58609 * 21 20 19 23 23 C 1.38807 * 120.00483 * 2.58999 * 21 20 19 24 24 N 1.31623 * 119.99539 * 353.41633 * 23 21 20 25 25 Si 1.86800 * 120.00200 * 173.41177 * 23 21 20 26 26 H 1.48498 * 109.46738 * 94.97499 * 25 23 21 27 27 H 1.48503 * 109.47086 * 214.97384 * 25 23 21 28 28 H 1.48504 * 109.46974 * 334.97335 * 25 23 21 29 29 C 1.47586 * 91.04751 * 24.55056 * 20 19 18 30 30 H 1.08994 * 109.47082 * 184.48579 * 1 2 3 31 31 H 1.08995 * 109.46785 * 304.48526 * 1 2 3 32 32 H 1.09003 * 109.46842 * 64.48801 * 1 2 3 33 33 H 0.96993 * 120.00488 * 265.00528 * 4 2 1 34 34 H 1.07997 * 120.00459 * 359.97438 * 8 7 5 35 35 H 1.08007 * 119.89137 * 180.02562 * 9 8 7 36 36 H 1.08001 * 119.88415 * 179.97438 * 10 9 8 37 37 H 1.07993 * 126.97797 * 0.02562 * 13 12 11 38 38 H 1.07994 * 126.73341 * 180.09838 * 14 13 12 39 39 H 1.08004 * 120.10221 * 179.72886 * 17 11 10 40 40 H 1.09003 * 112.94184 * 53.79026 * 18 2 1 41 41 H 1.08995 * 113.77562 * 336.34390 * 19 18 2 42 42 H 1.09002 * 113.76936 * 107.75275 * 19 18 2 43 43 H 0.97001 * 119.99480 * 180.02562 * 24 23 21 44 44 H 1.08996 * 113.76487 * 221.14726 * 29 20 19 45 45 H 1.08997 * 113.86922 * 89.76733 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8584 1.1613 -2.4116 7 6 2.6393 -0.7153 -3.5646 8 6 2.9711 -2.0703 -3.5049 9 6 3.4297 -2.7182 -4.6334 10 6 3.5629 -2.0300 -5.8252 11 6 3.2364 -0.6817 -5.8944 12 7 3.3740 0.0119 -7.1060 13 6 3.7274 -0.5325 -8.3024 14 6 3.7346 0.4890 -9.1908 15 7 3.4002 1.5897 -8.5080 16 7 3.1934 1.2746 -7.2785 17 6 2.7800 -0.0202 -4.7654 18 6 2.0401 -0.7213 1.2492 19 6 1.9659 0.1297 2.5298 20 7 3.3034 -0.4148 2.8461 21 6 4.0104 -0.6101 4.0025 22 1 5.0167 -0.9999 3.9607 23 6 3.4337 -0.3072 5.2282 24 7 2.2603 0.2874 5.2744 25 14 4.3229 -0.7434 6.8121 26 1 5.0969 0.4323 7.2850 27 1 3.3302 -1.1311 7.8463 28 1 5.2481 -1.8781 6.5639 29 6 3.5694 -0.6653 1.4162 30 1 -0.3633 -1.0245 0.0804 31 1 -0.3633 0.5818 0.8471 32 1 -0.3633 0.4426 -0.9275 33 1 2.2490 -1.6317 -1.1528 34 1 2.8687 -2.6109 -2.5756 35 1 3.6855 -3.7665 -4.5856 36 1 3.9228 -2.5425 -6.7051 37 1 3.9536 -1.5693 -8.5028 38 1 3.9692 0.4281 -10.2432 39 1 2.5299 1.0293 -4.8165 40 1 1.6226 -1.7219 1.3623 41 1 1.9616 1.2037 2.3441 42 1 1.1865 -0.1867 3.2230 43 1 1.8575 0.4994 6.1310 44 1 4.0677 -1.6150 1.2220 45 1 4.0372 0.1736 0.9011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970982430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:33 Heat of formation + Delta-G solvation = 157.677844 kcal Electronic energy + Delta-G solvation = -28170.094719 eV Core-core repulsion = 24192.312550 eV Total energy + Delta-G solvation = -3977.782169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.82800 -40.59608 -39.14711 -37.96902 -35.16713 -34.87424 -32.41592 -32.09431 -31.35823 -30.82195 -29.83856 -27.51228 -25.28967 -24.81895 -24.56688 -23.91145 -22.81229 -21.80800 -21.26602 -20.47204 -19.64847 -18.72185 -17.17458 -16.89694 -16.81437 -16.77997 -16.27278 -15.55629 -15.32536 -15.00841 -14.77628 -14.69861 -14.30846 -14.24300 -13.96372 -13.62511 -13.49827 -13.12973 -12.58975 -12.40007 -12.33926 -12.11959 -11.83739 -11.63158 -11.45770 -11.41814 -11.38919 -11.28244 -10.93690 -10.69749 -10.40808 -10.21585 -9.90360 -9.85959 -9.77320 -9.65215 -9.48115 -9.18852 -8.95137 -8.76211 -6.91081 -5.79711 -3.10757 -0.00644 0.43347 1.44715 1.76389 2.14456 2.57751 3.03158 3.37395 3.39681 3.42363 3.44621 3.85044 4.02379 4.18045 4.42716 4.44439 4.46533 4.47561 4.64525 4.75391 4.82335 5.05481 5.08507 5.13737 5.28254 5.36601 5.50243 5.55566 5.57961 5.64226 5.68873 5.74818 5.77602 5.93098 5.95647 6.03124 6.22499 6.31181 6.33976 6.40130 6.50957 6.58916 6.73800 7.19070 7.33561 7.47351 7.52945 7.95675 8.03434 8.14340 9.02251 9.68816 10.57614 11.37948 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024099 B = 0.001937 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.574481 B =14449.325234 C =14745.040938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.090 0.910 4 N -0.710 5.710 5 C 0.554 3.446 6 O -0.529 6.529 7 C -0.106 4.106 8 C -0.076 4.076 9 C -0.103 4.103 10 C -0.097 4.097 11 C 0.110 3.890 12 N -0.241 5.241 13 C -0.051 4.051 14 C -0.044 4.044 15 N -0.263 5.263 16 N -0.072 5.072 17 C -0.044 4.044 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.125 3.875 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.398 0.602 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.195 0.805 38 H 0.196 0.804 39 H 0.157 0.843 40 H 0.089 0.911 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.254 0.746 44 H 0.040 0.960 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 -10.259 -26.771 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.108 0.892 4 N -0.360 5.360 5 C 0.340 3.660 6 O -0.406 6.406 7 C -0.110 4.110 8 C -0.095 4.095 9 C -0.121 4.121 10 C -0.118 4.118 11 C 0.019 3.981 12 N -0.029 5.029 13 C -0.199 4.199 14 C -0.200 4.200 15 N -0.129 5.129 16 N -0.051 5.051 17 C -0.064 4.064 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.212 0.788 38 H 0.213 0.787 39 H 0.174 0.826 40 H 0.108 0.892 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.418 -8.018 -25.803 27.023 hybrid contribution 1.001 -1.701 0.349 2.004 sum 0.582 -9.719 -25.453 27.252 Atomic orbital electron populations 1.22114 0.95192 1.02007 1.02319 1.21195 0.93957 0.97590 0.82688 0.89174 1.46055 1.66373 1.14016 1.09579 1.18043 0.78356 0.86627 0.82990 1.90818 1.49826 1.15229 1.84760 1.19980 1.02637 0.94196 0.94189 1.21600 0.95246 0.93267 0.99414 1.20994 0.99148 1.00744 0.91242 1.21066 0.99572 0.91256 0.99889 1.17502 1.05711 0.91622 0.83219 1.44778 1.43350 1.07128 1.07635 1.23848 1.08691 1.02675 0.84678 1.23701 1.05881 0.88548 1.01842 1.75174 1.14816 1.25512 0.97386 1.78488 1.19024 0.93858 1.13705 1.21074 0.94333 1.01772 0.89261 1.23859 0.97647 1.00752 0.94465 1.22236 0.89658 0.93987 0.89126 1.46043 1.16070 1.72069 0.99620 1.19019 0.96903 1.36730 0.82536 0.90319 1.24784 0.97309 1.00846 0.97465 1.69824 1.17203 1.45458 1.24251 0.86120 0.78395 0.78035 0.83318 1.21677 1.21566 1.20591 1.22535 0.93006 0.97686 0.86888 0.92650 0.90952 0.92751 0.76725 0.84153 0.83649 0.84329 0.78847 0.78727 0.82554 0.89249 0.95315 0.90786 0.93607 0.94137 0.95018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.43 37.16 0.35 -1.77 16 2 C 0.15 2.19 2.29 -67.93 -0.16 2.03 16 3 H 0.09 1.55 7.49 -51.93 -0.39 1.16 16 4 N -0.71 -8.43 4.90 -54.74 -0.27 -8.70 16 5 C 0.55 7.33 7.74 -12.32 -0.10 7.23 16 6 O -0.53 -9.15 16.01 5.32 0.09 -9.06 16 7 C -0.11 -1.08 5.87 -104.99 -0.62 -1.70 16 8 C -0.08 -0.51 9.54 -39.16 -0.37 -0.88 16 9 C -0.10 -0.50 10.02 -39.67 -0.40 -0.89 16 10 C -0.10 -0.54 9.45 -39.33 -0.37 -0.91 16 11 C 0.11 0.99 6.67 -83.62 -0.56 0.43 16 12 N -0.24 -2.39 3.56 -10.50 -0.04 -2.43 16 13 C -0.05 -0.34 10.91 -16.67 -0.18 -0.52 16 14 C -0.04 -0.34 12.05 -17.72 -0.21 -0.56 16 15 N -0.26 -3.21 12.39 30.24 0.37 -2.83 16 16 N -0.07 -0.94 12.42 60.35 0.75 -0.19 16 17 C -0.04 -0.48 9.16 -39.00 -0.36 -0.84 16 18 C -0.15 -2.50 3.35 -89.70 -0.30 -2.80 16 19 C 0.18 3.97 7.03 -2.83 -0.02 3.95 16 20 N -0.61 -15.39 3.70 -177.70 -0.66 -16.05 16 21 C -0.22 -6.25 10.69 -15.06 -0.16 -6.41 16 22 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -27.07 11.43 55.49 0.63 -26.44 16 25 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 29 C 0.12 2.43 8.38 -2.97 -0.02 2.40 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.55 6.63 -40.82 -0.27 3.28 16 34 H 0.14 0.63 6.40 -52.49 -0.34 0.30 16 35 H 0.15 0.28 8.06 -52.48 -0.42 -0.15 16 36 H 0.14 0.33 6.77 -52.49 -0.36 -0.03 16 37 H 0.19 0.37 7.12 -52.49 -0.37 0.00 16 38 H 0.20 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.16 2.03 7.29 -52.48 -0.38 1.65 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 42 H 0.07 1.84 7.20 -51.93 -0.37 1.47 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -36.57 381.38 -7.79 -44.36 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.82 Total: 0.16 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.57 Total: -1.51 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.79 Total: -56.64 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.57 -7.79 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970982430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.042 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds