Wall clock time and date at job start Wed Apr 1 2020 00:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47065 * 2 1 4 4 N 1.46503 * 109.46969 * 240.00052 * 2 1 3 5 5 C 1.34786 * 119.99856 * 84.99939 * 4 2 1 6 6 O 1.21550 * 119.99922 * 0.02562 * 5 4 2 7 7 C 1.47854 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.39625 * 120.11496 * 0.02562 * 7 5 4 9 9 C 1.37969 * 119.98210 * 179.97438 * 8 7 5 10 10 C 1.38267 * 120.21816 * 0.02562 * 9 8 7 11 11 C 1.38899 * 120.22999 * 0.02562 * 10 9 8 12 12 N 1.40276 * 119.99794 * 179.97438 * 11 10 9 13 13 C 1.36115 * 125.93478 * 4.71282 * 12 11 10 14 14 C 1.35379 * 106.04613 * 179.88179 * 13 12 11 15 15 N 1.33780 * 106.53545 * 0.37562 * 14 13 12 16 16 N 1.28602 * 109.05867 * 359.75982 * 15 14 13 17 17 C 1.38587 * 120.00959 * 0.23229 * 11 10 9 18 18 C 1.52998 * 109.47113 * 120.00355 * 2 1 3 19 19 C 1.53940 * 113.73912 * 282.19664 * 18 2 1 20 20 N 1.47823 * 86.03405 * 222.08123 * 19 18 2 21 21 C 1.36935 * 134.45413 * 204.63942 * 20 19 18 22 22 H 1.08003 * 119.99163 * 182.58609 * 21 20 19 23 23 C 1.38807 * 120.00483 * 2.58999 * 21 20 19 24 24 N 1.31623 * 119.99539 * 353.41633 * 23 21 20 25 25 Si 1.86800 * 120.00200 * 173.41177 * 23 21 20 26 26 H 1.48498 * 109.46738 * 94.97499 * 25 23 21 27 27 H 1.48503 * 109.47086 * 214.97384 * 25 23 21 28 28 H 1.48504 * 109.46974 * 334.97335 * 25 23 21 29 29 C 1.47586 * 91.04751 * 24.55056 * 20 19 18 30 30 H 1.08994 * 109.47082 * 184.48579 * 1 2 3 31 31 H 1.08995 * 109.46785 * 304.48526 * 1 2 3 32 32 H 1.09003 * 109.46842 * 64.48801 * 1 2 3 33 33 H 0.96993 * 120.00488 * 265.00528 * 4 2 1 34 34 H 1.07997 * 120.00459 * 359.97438 * 8 7 5 35 35 H 1.08007 * 119.89137 * 180.02562 * 9 8 7 36 36 H 1.08001 * 119.88415 * 179.97438 * 10 9 8 37 37 H 1.07993 * 126.97797 * 0.02562 * 13 12 11 38 38 H 1.07994 * 126.73341 * 180.09838 * 14 13 12 39 39 H 1.08004 * 120.10221 * 179.72886 * 17 11 10 40 40 H 1.09003 * 112.94184 * 53.79026 * 18 2 1 41 41 H 1.08995 * 113.77562 * 336.34390 * 19 18 2 42 42 H 1.09002 * 113.76936 * 107.75275 * 19 18 2 43 43 H 0.97001 * 119.99480 * 180.02562 * 24 23 21 44 44 H 1.08996 * 113.76487 * 221.14726 * 29 20 19 45 45 H 1.08997 * 113.86922 * 89.76733 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8584 1.1613 -2.4116 7 6 2.6393 -0.7153 -3.5646 8 6 2.9711 -2.0703 -3.5049 9 6 3.4297 -2.7182 -4.6334 10 6 3.5629 -2.0300 -5.8252 11 6 3.2364 -0.6817 -5.8944 12 7 3.3740 0.0119 -7.1060 13 6 3.7274 -0.5325 -8.3024 14 6 3.7346 0.4890 -9.1908 15 7 3.4002 1.5897 -8.5080 16 7 3.1934 1.2746 -7.2785 17 6 2.7800 -0.0202 -4.7654 18 6 2.0401 -0.7213 1.2492 19 6 1.9659 0.1297 2.5298 20 7 3.3034 -0.4148 2.8461 21 6 4.0104 -0.6101 4.0025 22 1 5.0167 -0.9999 3.9607 23 6 3.4337 -0.3072 5.2282 24 7 2.2603 0.2874 5.2744 25 14 4.3229 -0.7434 6.8121 26 1 5.0969 0.4323 7.2850 27 1 3.3302 -1.1311 7.8463 28 1 5.2481 -1.8781 6.5639 29 6 3.5694 -0.6653 1.4162 30 1 -0.3633 -1.0245 0.0804 31 1 -0.3633 0.5818 0.8471 32 1 -0.3633 0.4426 -0.9275 33 1 2.2490 -1.6317 -1.1528 34 1 2.8687 -2.6109 -2.5756 35 1 3.6855 -3.7665 -4.5856 36 1 3.9228 -2.5425 -6.7051 37 1 3.9536 -1.5693 -8.5028 38 1 3.9692 0.4281 -10.2432 39 1 2.5299 1.0293 -4.8165 40 1 1.6226 -1.7219 1.3623 41 1 1.9616 1.2037 2.3441 42 1 1.1865 -0.1867 3.2230 43 1 1.8575 0.4994 6.1310 44 1 4.0677 -1.6150 1.2220 45 1 4.0372 0.1736 0.9011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970982430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:32 Heat of formation + Delta-G solvation = 131.819765 kcal Electronic energy + Delta-G solvation = -28171.216010 eV Core-core repulsion = 24192.312550 eV Total energy + Delta-G solvation = -3978.903459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.47170 -41.50748 -40.19535 -39.31490 -36.30458 -35.73415 -34.16920 -32.94276 -32.22313 -31.59389 -30.68619 -29.32574 -26.68581 -25.94188 -25.45933 -25.22008 -23.66832 -22.61357 -22.33551 -21.48219 -20.88183 -19.74914 -18.78865 -17.86248 -17.60254 -17.55806 -17.21198 -16.85391 -16.27936 -16.11904 -15.88941 -15.76657 -15.49257 -15.12959 -14.89010 -14.82320 -14.74547 -14.13405 -14.00057 -13.43055 -13.24081 -13.09293 -13.07719 -13.00118 -12.96388 -12.68259 -12.47886 -12.36653 -12.12559 -12.05493 -12.03635 -11.80440 -11.60838 -11.25650 -11.03404 -10.82095 -10.50754 -10.31828 -10.05666 -9.76556 -8.93338 -7.91509 -5.23885 -0.56368 -0.22133 0.88938 1.20710 1.45810 1.47246 1.52195 1.56761 1.76637 2.02737 2.47407 2.67922 3.29814 3.32328 3.37713 3.46637 3.64964 3.71473 3.81525 3.92135 3.97464 4.04085 4.20021 4.23475 4.24732 4.29785 4.44328 4.57416 4.60500 4.75501 4.77377 4.81143 4.86301 4.95631 5.02345 5.06012 5.11874 5.17586 5.24555 5.24961 5.29425 5.41915 5.49117 5.54804 5.64882 5.78938 5.93382 6.51551 6.91554 7.16823 7.36772 7.60828 8.56424 9.26064 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024099 B = 0.001937 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.574481 B =14449.325234 C =14745.040938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.058 0.942 4 N -0.695 5.695 5 C 0.553 3.447 6 O -0.583 6.583 7 C -0.126 4.126 8 C -0.065 4.065 9 C -0.087 4.087 10 C -0.075 4.075 11 C 0.092 3.908 12 N -0.246 5.246 13 C -0.030 4.030 14 C -0.054 4.054 15 N -0.305 5.305 16 N -0.135 5.135 17 C -0.070 4.070 18 C -0.106 4.106 19 C 0.168 3.832 20 N -0.643 5.643 21 C -0.236 4.236 22 H 0.084 0.916 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.292 1.292 27 H -0.292 1.292 28 H -0.264 1.264 29 C 0.127 3.873 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.417 0.583 34 H 0.168 0.832 35 H 0.193 0.807 36 H 0.184 0.816 37 H 0.250 0.750 38 H 0.231 0.769 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.007 0.993 42 H 0.047 0.953 43 H 0.249 0.751 44 H 0.069 0.931 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -15.509 -28.853 32.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.056 3.944 3 H 0.076 0.924 4 N -0.346 5.346 5 C 0.341 3.659 6 O -0.464 6.464 7 C -0.130 4.130 8 C -0.084 4.084 9 C -0.105 4.105 10 C -0.095 4.095 11 C 0.001 3.999 12 N -0.034 5.034 13 C -0.178 4.178 14 C -0.211 4.211 15 N -0.170 5.170 16 N -0.113 5.113 17 C -0.091 4.091 18 C -0.126 4.126 19 C 0.042 3.958 20 N -0.370 5.370 21 C -0.364 4.364 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.807 3.193 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.188 1.188 29 C 0.002 3.998 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.255 0.745 34 H 0.185 0.815 35 H 0.210 0.790 36 H 0.201 0.799 37 H 0.266 0.734 38 H 0.247 0.753 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.025 0.975 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.179 -13.297 -27.906 30.934 hybrid contribution 0.573 -0.127 0.865 1.046 sum 1.751 -13.424 -27.040 30.240 Atomic orbital electron populations 1.22049 0.93956 1.03337 1.01682 1.20797 0.94798 0.95899 0.82935 0.92413 1.45757 1.65937 1.14691 1.08262 1.18581 0.77279 0.86080 0.83997 1.90792 1.52216 1.17793 1.85643 1.19682 1.05249 0.95845 0.92220 1.21945 0.93658 0.91292 1.01538 1.21556 0.96712 1.02498 0.89714 1.21631 0.96802 0.89189 1.01882 1.17777 1.06771 0.93024 0.82320 1.44982 1.42881 1.06643 1.08870 1.24753 1.05733 1.04595 0.82745 1.24451 1.05334 0.87725 1.03585 1.75096 1.16035 1.27990 0.97888 1.78477 1.22354 0.96019 1.14411 1.20861 0.96607 1.00472 0.91163 1.23447 0.96034 1.00542 0.92545 1.22149 0.88354 0.93643 0.91611 1.46498 1.16965 1.72258 1.01252 1.19446 0.97316 1.35737 0.83890 0.89797 1.25648 0.98323 1.01424 1.00744 1.70017 1.18826 1.47001 1.24453 0.85064 0.77268 0.77919 0.79076 1.21932 1.21882 1.18836 1.22691 0.94826 0.98612 0.83673 0.90181 0.91928 0.93198 0.74471 0.81503 0.78977 0.79917 0.73429 0.75306 0.86654 0.86860 0.97496 0.93494 0.94253 0.91291 0.95474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.43 71.98 0.68 -3.37 16 2 C 0.16 4.72 2.29 44.99 0.10 4.82 16 3 H 0.06 2.11 7.49 -2.39 -0.02 2.09 16 4 N -0.69 -15.72 4.90 -445.38 -2.18 -17.91 16 5 C 0.55 15.01 7.74 86.79 0.67 15.68 16 6 O -0.58 -21.98 16.01 -3.87 -0.06 -22.04 16 7 C -0.13 -2.50 5.87 -20.10 -0.12 -2.62 16 8 C -0.07 -0.61 9.54 22.54 0.21 -0.39 16 9 C -0.09 -0.31 10.02 22.21 0.22 -0.09 16 10 C -0.07 -0.44 9.45 22.44 0.21 -0.23 16 11 C 0.09 1.51 6.67 38.03 0.25 1.77 16 12 N -0.25 -4.71 3.56 -187.14 -0.67 -5.37 16 13 C -0.03 -0.30 10.91 83.37 0.91 0.61 16 14 C -0.05 -0.76 12.05 83.74 1.01 0.25 16 15 N -0.31 -7.79 12.39 -58.24 -0.72 -8.51 16 16 N -0.14 -3.77 12.42 37.02 0.46 -3.31 16 17 C -0.07 -1.62 9.16 22.65 0.21 -1.41 16 18 C -0.11 -3.50 3.35 -10.14 -0.03 -3.53 16 19 C 0.17 7.87 7.03 86.44 0.61 8.48 16 20 N -0.64 -32.57 3.70 -716.12 -2.65 -35.22 16 21 C -0.24 -13.15 10.69 84.03 0.90 -12.25 16 22 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 23 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 24 N -0.95 -57.80 11.43 21.65 0.25 -57.55 16 25 Si 0.98 45.52 29.56 68.60 2.03 47.55 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 29 C 0.13 4.78 8.38 86.48 0.72 5.50 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.42 6.08 6.63 -92.71 -0.61 5.46 16 34 H 0.17 0.59 6.40 -2.91 -0.02 0.57 16 35 H 0.19 -0.94 8.06 -2.91 -0.02 -0.96 16 36 H 0.18 -0.56 6.77 -2.91 -0.02 -0.58 16 37 H 0.25 -0.67 7.12 -2.91 -0.02 -0.70 16 38 H 0.23 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.12 3.55 7.29 -2.91 -0.02 3.53 16 40 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.01 0.36 8.04 -2.39 -0.02 0.34 16 42 H 0.05 2.43 7.20 -2.39 -0.02 2.41 16 43 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.03 1.07 8.10 -2.39 -0.02 1.05 16 Total: -1.00 -90.02 381.38 3.89 -86.13 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 0.41 Total: 6.46 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 7.03 Total: 9.77 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -5.52 Total: -127.87 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -90.02 3.89 -86.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970982430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.953 kcal (2) G-P(sol) polarization free energy of solvation -90.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds