Wall clock time and date at job start Wed Apr 1 2020 00:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47469 * 2 1 4 4 N 1.46500 * 109.47500 * 120.00359 * 2 1 3 5 5 C 1.34778 * 119.99866 * 274.99703 * 4 2 1 6 6 O 1.21578 * 120.00098 * 359.97438 * 5 4 2 7 7 C 1.47621 * 120.00018 * 179.97438 * 5 4 2 8 8 C 1.39628 * 120.19209 * 306.71918 * 7 5 4 9 9 C 1.37861 * 119.91697 * 179.97438 * 8 7 5 10 10 C 1.38513 * 120.30207 * 359.97438 * 9 8 7 11 11 C 1.38103 * 120.38120 * 359.97438 * 10 9 8 12 12 C 1.38718 * 120.07996 * 359.79139 * 11 10 9 13 13 N 1.39808 * 120.15273 * 180.25029 * 12 11 10 14 14 C 1.36323 * 126.86521 * 353.44313 * 13 12 11 15 15 C 1.34968 * 106.77340 * 179.84854 * 14 13 12 16 16 N 1.33375 * 109.01828 * 0.42420 * 15 14 13 17 17 N 1.28766 * 109.92520 * 359.73706 * 16 15 14 18 18 C 1.53008 * 109.46858 * 239.99947 * 2 1 3 19 19 C 1.53946 * 113.74052 * 158.74450 * 18 2 1 20 20 N 1.47816 * 86.03157 * 222.08553 * 19 18 2 21 21 C 1.36945 * 134.45304 * 204.64440 * 20 19 18 22 22 H 1.07998 * 119.99802 * 173.07450 * 21 20 19 23 23 C 1.38818 * 119.99821 * 353.07293 * 21 20 19 24 24 N 1.31612 * 119.99819 * 5.08155 * 23 21 20 25 25 Si 1.86798 * 119.99638 * 185.07826 * 23 21 20 26 26 H 1.48500 * 109.47226 * 94.97841 * 25 23 21 27 27 H 1.48501 * 109.47133 * 214.97905 * 25 23 21 28 28 H 1.48504 * 109.47389 * 334.97859 * 25 23 21 29 29 C 1.47576 * 91.05400 * 24.55134 * 20 19 18 30 30 H 1.08997 * 109.47039 * 59.99244 * 1 2 3 31 31 H 1.09006 * 109.46553 * 300.00122 * 1 2 3 32 32 H 1.08991 * 109.47292 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00172 * 94.99213 * 4 2 1 34 34 H 1.07992 * 120.03961 * 359.95568 * 8 7 5 35 35 H 1.07995 * 119.85037 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.80772 * 180.02562 * 10 9 8 37 37 H 1.07995 * 119.95996 * 180.02562 * 11 10 9 38 38 H 1.07998 * 126.61599 * 0.02562 * 14 13 12 39 39 H 1.08004 * 125.48973 * 180.19486 * 15 14 13 40 40 H 1.08994 * 112.94450 * 290.33493 * 18 2 1 41 41 H 1.08998 * 113.76859 * 336.34331 * 19 18 2 42 42 H 1.09000 * 113.77263 * 107.74617 * 19 18 2 43 43 H 0.97006 * 119.99646 * 179.97438 * 24 23 21 44 44 H 1.09005 * 113.76711 * 221.15720 * 29 20 19 45 45 H 1.08993 * 113.87552 * 89.76830 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8585 1.1614 2.4116 7 6 2.6388 -0.7144 3.5625 8 6 2.0231 -1.8908 3.9942 9 6 2.4872 -2.5365 5.1204 10 6 3.5629 -2.0239 5.8265 11 6 4.1819 -0.8617 5.4100 12 6 3.7310 -0.2018 4.2762 13 7 4.3598 0.9720 3.8502 14 6 5.3401 1.6581 4.5034 15 6 5.6522 2.7207 3.7319 16 7 4.8871 2.7043 2.6395 17 7 4.1037 1.6827 2.6677 18 6 2.0399 -0.7213 -1.2493 19 6 3.4847 -0.3522 -1.6317 20 7 2.9976 -0.3177 -3.0269 21 6 3.5873 -0.4758 -4.2528 22 1 2.9784 -0.5135 -5.1440 23 6 4.9675 -0.5876 -4.3498 24 7 5.7016 -0.6422 -3.2588 25 14 5.7828 -0.6604 -6.0289 26 1 6.2199 0.7020 -6.4265 27 1 6.9624 -1.5606 -5.9678 28 1 4.8144 -1.1806 -7.0273 29 6 1.6212 -0.0471 -2.5685 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6318 1.1525 34 1 1.1841 -2.2943 3.4468 35 1 2.0098 -3.4461 5.4536 36 1 3.9202 -2.5365 6.7074 37 1 5.0203 -0.4683 5.9654 38 1 5.7836 1.3996 5.4536 39 1 6.3984 3.4663 3.9637 40 1 1.8527 -1.7948 -1.2263 41 1 3.8047 0.6189 -1.2541 42 1 4.2070 -1.1449 -1.4367 43 1 6.6661 -0.7207 -3.3266 44 1 0.8585 -0.5969 -3.1199 45 1 1.3908 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970985798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:35 Heat of formation + Delta-G solvation = 138.566708 kcal Electronic energy + Delta-G solvation = -29631.434791 eV Core-core repulsion = 25652.823901 eV Total energy + Delta-G solvation = -3978.610890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.19443 -41.27047 -40.14329 -39.15198 -36.18602 -35.47817 -34.21901 -32.94846 -31.75992 -31.22488 -30.54719 -29.37438 -26.73458 -25.89604 -25.44384 -24.88553 -23.47268 -22.33220 -22.31651 -21.42153 -20.75943 -19.51024 -18.78804 -18.37261 -17.45407 -16.94959 -16.80909 -16.61783 -16.39409 -16.12623 -15.77654 -15.48487 -15.42380 -15.07791 -14.86404 -14.64446 -14.61113 -14.17645 -13.93963 -13.47697 -13.31677 -13.15366 -13.08453 -12.91873 -12.73477 -12.62101 -12.53074 -12.26649 -12.15742 -12.09153 -11.98996 -11.75559 -11.52726 -11.29384 -10.91533 -10.85804 -10.39770 -10.12720 -9.93433 -9.49546 -8.95440 -7.94760 -5.28546 -0.57126 0.05362 0.89620 1.21224 1.41105 1.45031 1.53523 1.58605 1.75970 2.21032 2.44630 2.68350 3.25100 3.33353 3.35459 3.57954 3.63005 3.78490 3.89239 3.94363 4.07279 4.13610 4.25414 4.27940 4.30185 4.38413 4.48174 4.56767 4.59053 4.70513 4.80141 4.81343 4.84548 4.99226 5.06774 5.11668 5.20178 5.20539 5.28814 5.31262 5.37566 5.45868 5.54496 5.60780 5.64739 5.88200 5.91854 6.58821 6.86716 7.14991 7.33141 7.57141 8.54103 9.23120 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003226 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.000835 B = 8678.517994 C = 9545.419052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.164 3.836 3 H 0.046 0.954 4 N -0.705 5.705 5 C 0.557 3.443 6 O -0.553 6.553 7 C -0.151 4.151 8 C -0.071 4.071 9 C -0.110 4.110 10 C -0.067 4.067 11 C -0.126 4.126 12 C 0.142 3.858 13 N -0.330 5.330 14 C 0.031 3.969 15 C -0.088 4.088 16 N -0.291 5.291 17 N -0.076 5.076 18 C -0.107 4.107 19 C 0.176 3.824 20 N -0.643 5.643 21 C -0.238 4.238 22 H 0.089 0.911 23 C -0.070 4.070 24 N -0.956 5.956 25 Si 0.980 3.020 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.260 1.260 29 C 0.131 3.869 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.409 0.591 34 H 0.155 0.845 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.170 0.830 38 H 0.253 0.747 39 H 0.221 0.779 40 H 0.110 0.890 41 H -0.010 1.010 42 H 0.033 0.967 43 H 0.247 0.753 44 H 0.071 0.929 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -7.396 26.822 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.058 3.942 3 H 0.064 0.936 4 N -0.356 5.356 5 C 0.344 3.656 6 O -0.430 6.430 7 C -0.156 4.156 8 C -0.090 4.090 9 C -0.128 4.128 10 C -0.085 4.085 11 C -0.147 4.147 12 C 0.049 3.951 13 N -0.113 5.113 14 C -0.118 4.118 15 C -0.243 4.243 16 N -0.160 5.160 17 N -0.053 5.053 18 C -0.127 4.127 19 C 0.050 3.950 20 N -0.369 5.369 21 C -0.367 4.367 22 H 0.106 0.894 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.808 3.192 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.185 1.185 29 C 0.006 3.994 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.244 0.756 34 H 0.173 0.827 35 H 0.192 0.808 36 H 0.199 0.801 37 H 0.187 0.813 38 H 0.269 0.731 39 H 0.238 0.762 40 H 0.128 0.872 41 H 0.008 0.992 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.089 0.911 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.775 -6.466 25.260 26.940 hybrid contribution 1.649 0.395 -0.457 1.756 sum -5.126 -6.071 24.803 26.045 Atomic orbital electron populations 1.22016 0.92882 1.03346 1.02072 1.20757 0.95175 0.95332 0.82890 0.93554 1.45845 1.66798 1.14218 1.08699 1.18360 0.77378 0.86091 0.83803 1.90787 1.50228 1.16642 1.85346 1.19838 0.98677 0.99289 0.97790 1.21514 0.99203 0.90735 0.97539 1.21729 0.96526 1.00983 0.93584 1.21726 0.93705 0.93089 1.00006 1.21318 1.02560 0.96952 0.93838 1.18048 0.94466 0.85442 0.97130 1.48337 1.27017 1.19007 1.16928 1.24425 0.91895 0.93434 1.02088 1.24014 1.05208 1.03112 0.91961 1.74402 1.05079 1.14285 1.22239 1.82666 1.18452 1.02452 1.01681 1.23455 0.95854 1.00663 0.92714 1.21986 0.94002 0.95595 0.83384 1.46446 1.06028 1.82614 1.01846 1.19519 0.90462 1.41854 0.84830 0.89353 1.25749 0.96657 1.02834 1.01007 1.70071 1.04442 1.57597 1.28315 0.85035 0.78018 0.77037 0.79136 1.21856 1.21861 1.18452 1.22664 0.87806 0.97285 0.91651 0.90924 0.93409 0.90004 0.75563 0.82719 0.80802 0.80060 0.81276 0.73146 0.76236 0.87167 0.99170 0.94811 0.94415 0.91072 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.31 71.98 0.67 -3.30 16 2 C 0.16 5.70 2.38 44.99 0.11 5.81 16 3 H 0.05 2.05 7.41 -2.39 -0.02 2.03 16 4 N -0.70 -21.85 5.05 -445.61 -2.25 -24.10 16 5 C 0.56 18.87 5.94 86.72 0.52 19.39 16 6 O -0.55 -23.78 14.13 -3.96 -0.06 -23.83 16 7 C -0.15 -3.82 5.66 -19.99 -0.11 -3.93 16 8 C -0.07 -1.08 9.70 22.52 0.22 -0.86 16 9 C -0.11 -0.88 10.03 22.25 0.22 -0.66 16 10 C -0.07 -0.45 10.03 22.30 0.22 -0.22 16 11 C -0.13 -1.53 9.47 22.35 0.21 -1.32 16 12 C 0.14 3.39 6.69 38.46 0.26 3.65 16 13 N -0.33 -9.82 3.81 -186.57 -0.71 -10.53 16 14 C 0.03 0.63 10.91 83.24 0.91 1.54 16 15 C -0.09 -2.30 11.86 83.71 0.99 -1.30 16 16 N -0.29 -11.59 12.33 -58.71 -0.72 -12.32 16 17 N -0.08 -3.14 9.52 37.02 0.35 -2.78 16 18 C -0.11 -4.13 3.47 -10.13 -0.04 -4.16 16 19 C 0.18 9.33 6.99 86.44 0.60 9.94 16 20 N -0.64 -35.52 3.70 -716.19 -2.65 -38.17 16 21 C -0.24 -14.18 10.70 84.03 0.90 -13.28 16 22 H 0.09 4.94 7.83 -2.91 -0.02 4.92 16 23 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 24 N -0.96 -61.88 11.52 21.65 0.25 -61.63 16 25 Si 0.98 47.99 29.56 68.60 2.03 50.02 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 28 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 29 C 0.13 5.55 7.64 86.49 0.66 6.21 16 30 H 0.07 1.91 7.52 -2.39 -0.02 1.89 16 31 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.41 10.44 8.53 -92.71 -0.79 9.65 16 34 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.17 0.15 8.06 -2.91 -0.02 0.12 16 36 H 0.18 -0.27 8.06 -2.91 -0.02 -0.30 16 37 H 0.17 0.82 6.88 -2.91 -0.02 0.80 16 38 H 0.25 1.54 7.22 -2.91 -0.02 1.52 16 39 H 0.22 3.69 8.06 -2.91 -0.02 3.67 16 40 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 41 H -0.01 -0.57 7.99 -2.39 -0.02 -0.59 16 42 H 0.03 1.96 7.38 -2.39 -0.02 1.94 16 43 H 0.25 15.51 8.31 -92.70 -0.77 14.74 16 44 H 0.07 2.64 8.14 -2.38 -0.02 2.63 16 45 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16 Total: -1.00 -97.84 379.16 3.28 -94.56 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.23 Total: 15.04 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.81 Total: 13.74 kcal Atomic # 7 Polarization: -143.80 SS G_CDS: -5.73 Total: -149.53 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.06 Total: -23.83 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -97.84 3.28 -94.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970985798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.128 kcal (2) G-P(sol) polarization free energy of solvation -97.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds