Wall clock time and date at job start Wed Apr 1 2020 00:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47517 * 2 1 4 4 N 1.46508 * 109.47247 * 240.00124 * 2 1 3 5 5 C 1.34767 * 119.99989 * 84.99737 * 4 2 1 6 6 O 1.21578 * 120.00436 * 0.02562 * 5 4 2 7 7 C 1.47627 * 119.99950 * 179.97438 * 5 4 2 8 8 C 1.39623 * 120.18617 * 53.23348 * 7 5 4 9 9 C 1.37864 * 119.91587 * 179.74489 * 8 7 5 10 10 C 1.38505 * 120.30100 * 0.52645 * 9 8 7 11 11 C 1.38100 * 120.38270 * 359.72694 * 10 9 8 12 12 C 1.38721 * 120.07782 * 0.02562 * 11 10 9 13 13 N 1.39811 * 120.15336 * 179.97438 * 12 11 10 14 14 C 1.36330 * 126.86603 * 6.17787 * 13 12 11 15 15 C 1.34957 * 106.77784 * 179.88449 * 14 13 12 16 16 N 1.33378 * 109.01562 * 0.39787 * 15 14 13 17 17 N 1.28764 * 109.92759 * 359.74825 * 16 15 14 18 18 C 1.53000 * 109.47257 * 120.00353 * 2 1 3 19 19 C 1.53499 * 114.20441 * 299.99818 * 18 2 1 20 20 N 1.47064 * 87.98634 * 87.51790 * 19 18 2 21 21 C 1.36938 * 136.05794 * 207.08298 * 20 19 18 22 22 H 1.07998 * 120.00411 * 0.85692 * 21 20 19 23 23 C 1.38813 * 119.99599 * 180.84966 * 21 20 19 24 24 N 1.31627 * 119.99667 * 176.86301 * 23 21 20 25 25 Si 1.86794 * 120.00449 * 356.86225 * 23 21 20 26 26 H 1.48494 * 109.47440 * 175.59291 * 25 23 21 27 27 H 1.48502 * 109.47135 * 295.59162 * 25 23 21 28 28 H 1.48498 * 109.47155 * 55.58873 * 25 23 21 29 29 C 1.47066 * 87.88490 * 27.34422 * 20 19 18 30 30 H 1.08998 * 109.47084 * 299.99802 * 1 2 3 31 31 H 1.08998 * 109.47411 * 60.00063 * 1 2 3 32 32 H 1.09005 * 109.47425 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99536 * 265.00341 * 4 2 1 34 34 H 1.08005 * 120.04133 * 359.97438 * 8 7 5 35 35 H 1.08003 * 119.84664 * 180.25663 * 9 8 7 36 36 H 1.07996 * 119.80869 * 179.74573 * 10 9 8 37 37 H 1.08004 * 119.96532 * 179.97438 * 11 10 9 38 38 H 1.08003 * 126.60680 * 0.02741 * 14 13 12 39 39 H 1.08004 * 125.49284 * 180.11325 * 15 14 13 40 40 H 1.08998 * 113.41797 * 166.80266 * 18 2 1 41 41 H 1.09002 * 113.46851 * 332.73916 * 19 18 2 42 42 H 1.09001 * 113.52584 * 202.31133 * 19 18 2 43 43 H 0.96998 * 119.99717 * 354.96027 * 24 23 21 44 44 H 1.08997 * 113.46646 * 87.43382 * 29 20 19 45 45 H 1.08998 * 113.46716 * 217.88227 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1614 -2.4117 7 6 2.6396 -0.7141 -3.5624 8 6 2.0256 -1.8915 -3.9936 9 6 2.4869 -2.5338 -5.1228 10 6 3.5646 -2.0224 -5.8266 11 6 4.1846 -0.8615 -5.4082 12 6 3.7302 -0.1995 -4.2770 13 7 4.3570 0.9756 -3.8517 14 6 5.3436 1.6572 -4.5003 15 6 5.6466 2.7264 -3.7346 16 7 4.8826 2.7087 -2.6415 17 7 4.1010 1.6858 -2.6689 18 6 2.0400 -0.7213 1.2492 19 6 1.5898 -0.0847 2.5714 20 7 0.3744 -0.9091 2.4946 21 6 -0.9130 -0.8126 2.9512 22 1 -1.2229 0.0559 3.5134 23 6 -1.8197 -1.8310 2.6912 24 7 -3.0393 -1.7674 3.1822 25 14 -1.3093 -3.2915 1.6445 26 1 -2.4142 -4.2827 1.6053 27 1 -1.0083 -2.8309 0.2652 28 1 -0.0993 -3.9219 2.2309 29 6 1.1518 -1.8859 1.7172 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2489 -1.6318 -1.1526 34 1 1.1879 -2.2966 -3.4452 35 1 2.0084 -3.4423 -5.4577 36 1 3.9220 -2.5343 -6.7078 37 1 5.0247 -0.4689 -5.9618 38 1 5.7940 1.3937 -5.4459 39 1 6.3913 3.4733 -3.9670 40 1 3.1024 -0.9610 1.2076 41 1 1.3944 0.9849 2.4938 42 1 2.2318 -0.3355 3.4158 43 1 -3.2826 -1.0474 3.7849 44 1 1.6788 -2.6122 2.3358 45 1 0.5833 -2.3509 0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970985799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:39 Heat of formation + Delta-G solvation = 187.711285 kcal Electronic energy + Delta-G solvation = -30006.809003 eV Core-core repulsion = 26030.329182 eV Total energy + Delta-G solvation = -3976.479821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.38606 -40.35719 -39.41519 -38.17845 -34.88760 -34.37411 -32.43367 -32.01968 -30.91415 -30.09012 -29.40747 -27.94477 -25.42066 -25.03293 -24.29118 -23.73380 -22.13144 -21.65031 -21.03784 -20.22047 -19.17745 -18.58571 -17.58992 -17.31053 -16.16453 -15.91662 -15.80797 -15.76614 -15.48215 -15.16387 -14.96433 -14.50491 -14.40624 -13.98321 -13.80889 -13.66938 -13.31846 -13.13155 -12.66293 -12.33185 -12.00784 -11.97188 -11.62225 -11.48128 -11.37599 -11.27201 -11.24601 -11.13931 -10.86916 -10.52399 -10.30023 -9.91357 -9.79234 -9.59295 -9.50039 -9.13043 -9.00786 -8.88880 -8.79453 -8.67579 -7.06931 -6.26123 -3.17923 0.11769 0.60281 1.58460 1.88848 2.40259 2.79463 3.15236 3.34635 3.38419 3.41573 3.63311 3.98641 4.15322 4.38587 4.52692 4.57967 4.60048 4.74700 4.79048 4.81544 4.90561 4.99168 5.08754 5.16524 5.21956 5.32846 5.51072 5.66987 5.73903 5.77547 5.87654 5.94594 5.97446 6.09515 6.10612 6.24926 6.28229 6.32453 6.43735 6.52480 6.55513 6.65553 6.83554 7.01910 7.13588 7.35725 7.71800 8.00164 8.27647 8.43184 9.01772 9.54102 10.40603 11.25304 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.003447 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.833486 B = 8120.372314 C = 9395.852725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.175 3.825 3 H 0.087 0.913 4 N -0.713 5.713 5 C 0.559 3.441 6 O -0.504 6.504 7 C -0.116 4.116 8 C -0.068 4.068 9 C -0.120 4.120 10 C -0.081 4.081 11 C -0.135 4.135 12 C 0.181 3.819 13 N -0.328 5.328 14 C 0.010 3.990 15 C -0.073 4.073 16 N -0.238 5.238 17 N -0.006 5.006 18 C -0.144 4.144 19 C 0.132 3.868 20 N -0.623 5.623 21 C -0.295 4.295 22 H 0.082 0.918 23 C -0.026 4.026 24 N -0.939 5.939 25 Si 1.070 2.930 26 H -0.299 1.299 27 H -0.288 1.288 28 H -0.291 1.291 29 C 0.099 3.901 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.395 0.605 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.193 0.807 39 H 0.188 0.812 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.260 0.740 44 H 0.042 0.958 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.976 -1.361 -21.999 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.072 3.928 3 H 0.105 0.895 4 N -0.364 5.364 5 C 0.342 3.658 6 O -0.377 6.377 7 C -0.122 4.122 8 C -0.087 4.087 9 C -0.139 4.139 10 C -0.100 4.100 11 C -0.156 4.156 12 C 0.087 3.913 13 N -0.110 5.110 14 C -0.139 4.139 15 C -0.226 4.226 16 N -0.110 5.110 17 N 0.016 4.984 18 C -0.164 4.164 19 C 0.005 3.995 20 N -0.352 5.352 21 C -0.421 4.421 22 H 0.100 0.900 23 C -0.224 4.224 24 N -0.581 5.581 25 Si 0.904 3.096 26 H -0.227 1.227 27 H -0.217 1.217 28 H -0.218 1.218 29 C -0.026 4.026 30 H 0.111 0.889 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.229 0.771 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.210 0.790 39 H 0.205 0.795 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.119 -1.703 -21.287 28.006 hybrid contribution 1.378 0.741 -0.224 1.580 sum 19.497 -0.962 -21.510 29.047 Atomic orbital electron populations 1.22307 0.93293 1.03479 1.02161 1.20615 0.95237 0.95964 0.80977 0.89464 1.46039 1.66870 1.13727 1.09715 1.17753 0.78706 0.86608 0.82705 1.90838 1.48156 1.14557 1.84182 1.19912 0.96639 0.97176 0.98448 1.21357 0.98927 0.92008 0.96410 1.21272 0.96871 1.00657 0.95100 1.21147 0.94946 0.94414 0.99449 1.20831 1.02118 0.96984 0.95656 1.17432 0.93588 0.85027 0.95265 1.48056 1.26394 1.18662 1.17861 1.23480 0.93760 0.95320 1.01301 1.23251 1.05064 1.01147 0.93136 1.74450 1.03557 1.13279 1.19686 1.82707 1.15993 1.00889 0.98827 1.23235 0.98314 0.99432 0.95428 1.22273 0.88203 0.96250 0.92791 1.46093 1.05220 1.19840 1.64041 1.20132 0.82946 1.05928 1.33100 0.89992 1.25603 0.93844 1.00635 1.02301 1.70901 1.18262 1.35292 1.33682 0.83795 0.74005 0.76099 0.75699 1.22653 1.21718 1.21825 1.22857 0.92163 0.93043 0.94580 0.88909 0.94580 0.91820 0.77142 0.83878 0.84379 0.84336 0.84522 0.79033 0.79485 0.90489 0.93315 0.94186 0.92957 0.94044 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.06 37.15 0.30 -2.90 16 2 C 0.18 3.12 2.76 -67.93 -0.19 2.93 16 3 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 4 N -0.71 -10.86 5.05 -54.82 -0.28 -11.14 16 5 C 0.56 8.96 5.95 -12.43 -0.07 8.88 16 6 O -0.50 -10.05 14.12 5.30 0.07 -9.98 16 7 C -0.12 -1.44 5.66 -104.82 -0.59 -2.03 16 8 C -0.07 -0.63 9.69 -39.20 -0.38 -1.01 16 9 C -0.12 -0.78 10.02 -39.62 -0.40 -1.18 16 10 C -0.08 -0.45 10.03 -39.53 -0.40 -0.84 16 11 C -0.13 -0.94 9.47 -39.45 -0.37 -1.32 16 12 C 0.18 2.02 6.69 -83.32 -0.56 1.46 16 13 N -0.33 -4.16 3.81 -10.32 -0.04 -4.20 16 14 C 0.01 0.09 10.91 -16.72 -0.18 -0.10 16 15 C -0.07 -0.75 11.86 -18.05 -0.21 -0.96 16 16 N -0.24 -3.67 12.33 30.09 0.37 -3.30 16 17 N -0.01 -0.10 9.51 60.35 0.57 0.48 16 18 C -0.14 -2.49 4.25 -89.97 -0.38 -2.87 16 19 C 0.13 2.58 7.86 -8.51 -0.07 2.52 16 20 N -0.62 -14.77 2.09 -184.60 -0.39 -15.15 16 21 C -0.29 -8.28 9.92 -15.06 -0.15 -8.43 16 22 H 0.08 2.46 8.05 -52.49 -0.42 2.04 16 23 C -0.03 -0.75 5.50 -17.43 -0.10 -0.84 16 24 N -0.94 -29.58 13.70 55.49 0.76 -28.82 16 25 Si 1.07 26.33 24.41 -169.99 -4.15 22.18 16 26 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 27 H -0.29 -6.51 5.35 56.52 0.30 -6.20 16 28 H -0.29 -6.70 6.38 56.52 0.36 -6.34 16 29 C 0.10 2.00 4.81 -8.37 -0.04 1.96 16 30 H 0.09 2.16 5.93 -51.93 -0.31 1.85 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.40 4.37 -51.93 -0.23 1.17 16 33 H 0.40 5.00 8.53 -40.82 -0.35 4.66 16 34 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 36 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 37 H 0.14 0.54 6.88 -52.48 -0.36 0.18 16 38 H 0.19 0.69 7.21 -52.48 -0.38 0.31 16 39 H 0.19 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 44 H 0.04 0.83 7.92 -51.93 -0.41 0.41 16 45 H 0.05 1.09 3.22 -51.93 -0.17 0.92 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -37.77 360.52 -7.12 -44.89 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.69 Total: 4.35 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.79 Total: -4.74 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 1.00 Total: -62.14 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -4.15 Total: 22.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.77 -7.12 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970985799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.604 kcal (2) G-P(sol) polarization free energy of solvation -37.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds