Wall clock time and date at job start Wed Apr 1 2020 00:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47517 * 2 1 4 4 N 1.46508 * 109.47247 * 240.00124 * 2 1 3 5 5 C 1.34767 * 119.99989 * 84.99737 * 4 2 1 6 6 O 1.21578 * 120.00436 * 0.02562 * 5 4 2 7 7 C 1.47627 * 119.99950 * 179.97438 * 5 4 2 8 8 C 1.39623 * 120.18617 * 53.23348 * 7 5 4 9 9 C 1.37864 * 119.91587 * 179.74489 * 8 7 5 10 10 C 1.38505 * 120.30100 * 0.52645 * 9 8 7 11 11 C 1.38100 * 120.38270 * 359.72694 * 10 9 8 12 12 C 1.38721 * 120.07782 * 0.02562 * 11 10 9 13 13 N 1.39811 * 120.15336 * 179.97438 * 12 11 10 14 14 C 1.36330 * 126.86603 * 6.17787 * 13 12 11 15 15 C 1.34957 * 106.77784 * 179.88449 * 14 13 12 16 16 N 1.33378 * 109.01562 * 0.39787 * 15 14 13 17 17 N 1.28764 * 109.92759 * 359.74825 * 16 15 14 18 18 C 1.53000 * 109.47257 * 120.00353 * 2 1 3 19 19 C 1.53499 * 114.20441 * 299.99818 * 18 2 1 20 20 N 1.47064 * 87.98634 * 87.51790 * 19 18 2 21 21 C 1.36938 * 136.05794 * 207.08298 * 20 19 18 22 22 H 1.07998 * 120.00411 * 0.85692 * 21 20 19 23 23 C 1.38813 * 119.99599 * 180.84966 * 21 20 19 24 24 N 1.31627 * 119.99667 * 176.86301 * 23 21 20 25 25 Si 1.86794 * 120.00449 * 356.86225 * 23 21 20 26 26 H 1.48494 * 109.47440 * 175.59291 * 25 23 21 27 27 H 1.48502 * 109.47135 * 295.59162 * 25 23 21 28 28 H 1.48498 * 109.47155 * 55.58873 * 25 23 21 29 29 C 1.47066 * 87.88490 * 27.34422 * 20 19 18 30 30 H 1.08998 * 109.47084 * 299.99802 * 1 2 3 31 31 H 1.08998 * 109.47411 * 60.00063 * 1 2 3 32 32 H 1.09005 * 109.47425 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99536 * 265.00341 * 4 2 1 34 34 H 1.08005 * 120.04133 * 359.97438 * 8 7 5 35 35 H 1.08003 * 119.84664 * 180.25663 * 9 8 7 36 36 H 1.07996 * 119.80869 * 179.74573 * 10 9 8 37 37 H 1.08004 * 119.96532 * 179.97438 * 11 10 9 38 38 H 1.08003 * 126.60680 * 0.02741 * 14 13 12 39 39 H 1.08004 * 125.49284 * 180.11325 * 15 14 13 40 40 H 1.08998 * 113.41797 * 166.80266 * 18 2 1 41 41 H 1.09002 * 113.46851 * 332.73916 * 19 18 2 42 42 H 1.09001 * 113.52584 * 202.31133 * 19 18 2 43 43 H 0.96998 * 119.99717 * 354.96027 * 24 23 21 44 44 H 1.08997 * 113.46646 * 87.43382 * 29 20 19 45 45 H 1.08998 * 113.46716 * 217.88227 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1614 -2.4117 7 6 2.6396 -0.7141 -3.5624 8 6 2.0256 -1.8915 -3.9936 9 6 2.4869 -2.5338 -5.1228 10 6 3.5646 -2.0224 -5.8266 11 6 4.1846 -0.8615 -5.4082 12 6 3.7302 -0.1995 -4.2770 13 7 4.3570 0.9756 -3.8517 14 6 5.3436 1.6572 -4.5003 15 6 5.6466 2.7264 -3.7346 16 7 4.8826 2.7087 -2.6415 17 7 4.1010 1.6858 -2.6689 18 6 2.0400 -0.7213 1.2492 19 6 1.5898 -0.0847 2.5714 20 7 0.3744 -0.9091 2.4946 21 6 -0.9130 -0.8126 2.9512 22 1 -1.2229 0.0559 3.5134 23 6 -1.8197 -1.8310 2.6912 24 7 -3.0393 -1.7674 3.1822 25 14 -1.3093 -3.2915 1.6445 26 1 -2.4142 -4.2827 1.6053 27 1 -1.0083 -2.8309 0.2652 28 1 -0.0993 -3.9219 2.2309 29 6 1.1518 -1.8859 1.7172 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2489 -1.6318 -1.1526 34 1 1.1879 -2.2966 -3.4452 35 1 2.0084 -3.4423 -5.4577 36 1 3.9220 -2.5343 -6.7078 37 1 5.0247 -0.4689 -5.9618 38 1 5.7940 1.3937 -5.4459 39 1 6.3913 3.4733 -3.9670 40 1 3.1024 -0.9610 1.2076 41 1 1.3944 0.9849 2.4938 42 1 2.2318 -0.3355 3.4158 43 1 -3.2826 -1.0474 3.7849 44 1 1.6788 -2.6122 2.3358 45 1 0.5833 -2.3509 0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970985799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:38 Heat of formation + Delta-G solvation = 159.215143 kcal Electronic energy + Delta-G solvation = -30008.044689 eV Core-core repulsion = 26030.329182 eV Total energy + Delta-G solvation = -3977.715507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.18347 -41.53384 -40.64130 -39.28787 -36.02676 -35.44842 -34.48601 -32.91697 -31.70036 -31.07233 -30.50946 -29.83458 -27.07447 -26.13445 -25.31235 -24.86024 -23.38601 -22.42897 -22.32899 -21.32790 -20.60100 -19.65178 -19.30198 -18.44258 -17.42939 -17.06149 -16.85460 -16.75826 -16.60069 -16.21676 -15.97017 -15.79239 -15.39313 -15.28512 -15.07633 -14.81643 -14.70501 -14.20753 -13.86537 -13.63098 -13.31553 -13.11840 -13.04109 -12.96795 -12.63962 -12.60493 -12.31830 -12.20867 -12.12212 -12.09875 -12.03173 -11.60720 -11.19515 -11.09461 -10.90228 -10.79040 -10.39272 -10.15327 -10.00375 -9.50075 -9.10204 -8.58031 -5.40319 -0.57836 0.02970 0.89327 1.20333 1.35449 1.48636 1.60400 1.67961 1.75693 2.11252 2.57767 2.64547 3.03560 3.25559 3.32704 3.46710 3.60155 3.66575 3.77716 3.89576 4.08459 4.15102 4.20763 4.25723 4.30108 4.35585 4.41584 4.45248 4.59656 4.65226 4.66547 4.74642 4.78581 4.81893 4.97739 5.03565 5.10325 5.19305 5.20399 5.28359 5.31360 5.37380 5.46578 5.58643 5.60851 5.90791 5.99460 6.55190 6.74670 7.15651 7.29469 7.37732 8.32172 8.96128 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.003447 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.833486 B = 8120.372314 C = 9395.852725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.187 3.813 3 H 0.068 0.932 4 N -0.706 5.706 5 C 0.558 3.442 6 O -0.552 6.552 7 C -0.148 4.148 8 C -0.077 4.077 9 C -0.110 4.110 10 C -0.064 4.064 11 C -0.122 4.122 12 C 0.150 3.850 13 N -0.331 5.331 14 C 0.032 3.968 15 C -0.086 4.086 16 N -0.285 5.285 17 N -0.076 5.076 18 C -0.115 4.115 19 C 0.126 3.874 20 N -0.652 5.652 21 C -0.273 4.273 22 H 0.043 0.957 23 C -0.087 4.087 24 N -0.979 5.979 25 Si 1.106 2.894 26 H -0.313 1.313 27 H -0.261 1.261 28 H -0.259 1.259 29 C 0.096 3.904 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.410 0.590 34 H 0.142 0.858 35 H 0.169 0.831 36 H 0.183 0.817 37 H 0.175 0.825 38 H 0.251 0.749 39 H 0.222 0.778 40 H 0.118 0.882 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.243 0.757 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.205 -4.266 -26.508 36.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.082 3.918 3 H 0.087 0.913 4 N -0.357 5.357 5 C 0.344 3.656 6 O -0.429 6.429 7 C -0.154 4.154 8 C -0.096 4.096 9 C -0.129 4.129 10 C -0.082 4.082 11 C -0.143 4.143 12 C 0.057 3.943 13 N -0.113 5.113 14 C -0.117 4.117 15 C -0.241 4.241 16 N -0.154 5.154 17 N -0.053 5.053 18 C -0.134 4.134 19 C 0.000 4.000 20 N -0.381 5.381 21 C -0.401 4.401 22 H 0.061 0.939 23 C -0.278 4.278 24 N -0.625 5.625 25 Si 0.933 3.067 26 H -0.242 1.242 27 H -0.188 1.188 28 H -0.184 1.184 29 C -0.028 4.028 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.246 0.754 34 H 0.160 0.840 35 H 0.187 0.813 36 H 0.200 0.800 37 H 0.192 0.808 38 H 0.267 0.733 39 H 0.238 0.762 40 H 0.136 0.864 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.406 -4.615 -25.780 34.466 hybrid contribution 0.161 1.727 1.031 2.017 sum 22.567 -2.889 -24.749 33.618 Atomic orbital electron populations 1.22100 0.95751 1.01929 0.99979 1.20229 0.92982 0.95753 0.82809 0.91343 1.45842 1.66710 1.14309 1.08876 1.18398 0.77346 0.86135 0.83702 1.90803 1.50067 1.16919 1.85123 1.19733 0.98889 0.98914 0.97820 1.21469 0.99042 0.91339 0.97790 1.21687 0.96708 1.01010 0.93472 1.21718 0.93403 0.93307 0.99804 1.21331 1.02554 0.96639 0.93728 1.17913 0.94176 0.85330 0.96917 1.48273 1.26740 1.18949 1.17358 1.24441 0.91573 0.93571 1.02137 1.23998 1.05218 1.02676 0.92209 1.74384 1.04833 1.13919 1.22287 1.82659 1.18293 1.02649 1.01730 1.23010 0.99944 0.97069 0.93416 1.22522 0.86830 0.95632 0.95008 1.46108 1.04947 1.22429 1.64571 1.19901 0.85523 1.03989 1.30665 0.93864 1.26976 0.93377 1.03711 1.03731 1.71017 1.20131 1.35683 1.35702 0.83420 0.74474 0.72910 0.75904 1.24178 1.18787 1.18391 1.23075 0.91901 0.93606 0.94213 0.92240 0.95603 0.92769 0.75394 0.84012 0.81313 0.79957 0.80769 0.73337 0.76163 0.86425 0.94216 0.91820 0.94806 0.91889 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.00 8.06 71.98 0.58 -5.42 16 2 C 0.19 6.72 2.76 44.99 0.12 6.85 16 3 H 0.07 2.77 7.58 -2.39 -0.02 2.76 16 4 N -0.71 -21.30 5.05 -445.63 -2.25 -23.55 16 5 C 0.56 18.26 5.95 86.72 0.52 18.77 16 6 O -0.55 -23.35 14.12 -3.96 -0.06 -23.41 16 7 C -0.15 -3.51 5.66 -20.00 -0.11 -3.62 16 8 C -0.08 -1.24 9.69 22.52 0.22 -1.03 16 9 C -0.11 -0.89 10.02 22.24 0.22 -0.66 16 10 C -0.06 -0.30 10.03 22.30 0.22 -0.08 16 11 C -0.12 -1.06 9.47 22.35 0.21 -0.85 16 12 C 0.15 2.98 6.69 38.45 0.26 3.24 16 13 N -0.33 -7.95 3.81 -186.57 -0.71 -8.66 16 14 C 0.03 0.46 10.91 83.24 0.91 1.37 16 15 C -0.09 -1.65 11.86 83.70 0.99 -0.66 16 16 N -0.28 -9.05 12.33 -58.72 -0.72 -9.77 16 17 N -0.08 -2.62 9.51 37.02 0.35 -2.27 16 18 C -0.11 -3.76 4.25 -10.37 -0.04 -3.81 16 19 C 0.13 4.86 7.86 83.18 0.65 5.52 16 20 N -0.65 -30.95 2.09 -737.95 -1.55 -32.50 16 21 C -0.27 -15.98 9.92 84.03 0.83 -15.14 16 22 H 0.04 2.79 8.05 -2.91 -0.02 2.77 16 23 C -0.09 -5.27 5.50 84.86 0.47 -4.80 16 24 N -0.98 -64.73 13.70 21.65 0.30 -64.44 16 25 Si 1.11 52.94 24.41 68.60 1.67 54.62 16 26 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 27 H -0.26 -11.17 5.35 99.48 0.53 -10.64 16 28 H -0.26 -10.94 6.38 99.48 0.64 -10.30 16 29 C 0.10 3.67 4.81 83.27 0.40 4.07 16 30 H 0.06 2.93 5.93 -2.39 -0.01 2.91 16 31 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 2.40 4.37 -2.38 -0.01 2.39 16 33 H 0.41 9.72 8.53 -92.71 -0.79 8.93 16 34 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.17 0.34 8.06 -2.91 -0.02 0.31 16 36 H 0.18 -0.62 8.06 -2.91 -0.02 -0.64 16 37 H 0.17 0.11 6.88 -2.91 -0.02 0.09 16 38 H 0.25 0.23 7.21 -2.91 -0.02 0.21 16 39 H 0.22 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.04 1.59 8.12 -2.39 -0.02 1.57 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.24 16.26 8.73 -92.71 -0.81 15.45 16 44 H 0.06 2.22 7.92 -2.39 -0.02 2.20 16 45 H 0.05 2.02 3.22 -2.39 -0.01 2.01 16 Total: -1.00 -93.93 360.52 3.46 -90.47 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.03 Total: 15.75 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 6.45 Total: 3.76 kcal Atomic # 7 Polarization: -136.60 SS G_CDS: -4.58 Total: -141.18 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.06 Total: -23.41 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 1.67 Total: 54.62 kcal Total: -93.93 3.46 -90.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970985799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.689 kcal (2) G-P(sol) polarization free energy of solvation -93.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds