Wall clock time and date at job start Wed Apr 1 2020 01:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40231 * 126.65557 * 2 1 4 4 N 1.28646 * 109.50880 * 179.97438 * 3 2 1 5 5 C 1.35425 * 110.12676 * 0.02562 * 4 3 2 6 6 C 1.39802 * 133.03929 * 180.02562 * 5 4 3 7 7 C 1.38886 * 119.55876 * 179.97438 * 6 5 4 8 8 C 1.47718 * 119.86042 * 180.02562 * 7 6 5 9 9 O 1.21563 * 120.00083 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99764 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00137 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47473 * 180.02562 * 11 10 8 13 13 H 1.08997 * 115.51088 * 29.58587 * 12 11 10 14 14 C 1.53002 * 117.44419 * 244.24405 * 12 11 10 15 15 H 1.09005 * 119.53854 * 4.11688 * 14 12 11 16 16 C 1.54380 * 118.12315 * 160.80651 * 14 12 11 17 17 N 1.48143 * 104.62170 * 87.19193 * 16 14 12 18 18 C 1.36932 * 127.84342 * 140.43318 * 17 16 14 19 19 H 1.08000 * 119.99823 * 344.38565 * 18 17 16 20 20 C 1.38812 * 120.00095 * 164.38671 * 18 17 16 21 21 N 1.31620 * 120.00362 * 350.81155 * 20 18 17 22 22 Si 1.86799 * 119.99940 * 170.81159 * 20 18 17 23 23 H 1.48502 * 109.46983 * 94.81223 * 22 20 18 24 24 H 1.48507 * 109.47330 * 214.80997 * 22 20 18 25 25 H 1.48497 * 109.47260 * 334.81140 * 22 20 18 26 26 C 1.48150 * 104.31837 * 320.41377 * 17 16 14 27 27 C 1.52996 * 117.44546 * 175.00237 * 12 11 10 28 28 H 1.09006 * 119.54125 * 355.88049 * 27 12 11 29 29 C 1.40256 * 120.27042 * 0.02562 * 7 6 5 30 30 C 1.36258 * 120.45585 * 359.97438 * 29 7 6 31 31 C 1.37264 * 126.66135 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47562 * 269.99761 * 1 2 3 33 33 H 1.09004 * 109.47593 * 30.00362 * 1 2 3 34 34 H 1.09007 * 109.47289 * 149.99977 * 1 2 3 35 35 H 1.07994 * 120.22258 * 359.93551 * 6 5 4 36 36 H 0.96997 * 119.99744 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47145 * 300.00433 * 11 10 8 38 38 H 1.09007 * 109.47118 * 60.00217 * 11 10 8 39 39 H 1.09000 * 110.40859 * 205.97709 * 16 14 12 40 40 H 1.09003 * 110.41037 * 328.28547 * 16 14 12 41 41 H 0.96994 * 120.00404 * 179.97438 * 21 20 18 42 42 H 1.09000 * 110.41126 * 280.79856 * 26 17 16 43 43 H 1.09003 * 110.40368 * 158.36651 * 26 17 16 44 44 H 1.07997 * 119.76915 * 179.71991 * 29 7 6 45 45 H 1.07999 * 119.92333 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3021 1.1250 0.0000 4 7 3.5314 0.7457 0.0005 5 6 3.6018 -0.6067 0.0004 6 6 4.6718 -1.5064 0.0012 7 6 4.4187 -2.8720 0.0012 8 6 5.5443 -3.8287 0.0027 9 8 6.6892 -3.4201 0.0034 10 7 5.3018 -5.1545 0.0033 11 6 6.4180 -6.1032 0.0042 12 6 5.8724 -7.5326 0.0040 13 1 4.9062 -7.6663 -0.4823 14 6 6.1715 -8.4016 1.2273 15 1 6.6952 -7.9682 2.0794 16 6 5.2897 -9.6456 1.4693 17 7 5.9404 -10.7229 0.6879 18 6 6.1056 -12.0353 1.0422 19 1 5.9752 -12.3374 2.0708 20 6 6.4405 -12.9773 0.0792 21 7 6.4228 -12.6503 -1.1956 22 14 6.9165 -14.7091 0.5926 23 1 5.7215 -15.5888 0.5340 24 1 7.9595 -15.2292 -0.3277 25 1 7.4468 -14.6862 1.9794 26 6 6.3715 -10.0584 -0.5640 27 6 6.8848 -8.6738 -0.1134 28 1 7.9400 -8.4431 -0.2602 29 6 3.0988 -3.3464 -0.0001 30 6 2.0516 -2.4747 -0.0009 31 6 2.2845 -1.1011 0.0005 32 1 -0.3634 0.0000 1.0276 33 1 -0.3634 0.8900 -0.5139 34 1 -0.3634 -0.8900 -0.5139 35 1 5.6884 -1.1421 0.0012 36 1 4.3882 -5.4804 0.0031 37 1 7.0280 -5.9474 -0.8857 38 1 7.0273 -5.9466 0.8944 39 1 5.2748 -9.9005 2.5290 40 1 4.2767 -9.4697 1.1073 41 1 6.6572 -13.3084 -1.8685 42 1 5.5281 -9.9477 -1.2455 43 1 7.1729 -10.6248 -1.0384 44 1 2.9113 -4.4100 -0.0046 45 1 1.0387 -2.8494 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978345030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:58 Heat of formation + Delta-G solvation = 143.947834 kcal Electronic energy + Delta-G solvation = -27629.554933 eV Core-core repulsion = 23651.177387 eV Total energy + Delta-G solvation = -3978.377547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.55117 -40.13831 -38.84783 -37.50110 -35.26079 -35.06440 -33.41977 -31.34124 -31.18116 -30.58327 -28.12563 -27.47564 -27.14802 -25.29799 -24.12933 -23.67827 -21.67861 -21.20334 -21.06783 -20.01981 -19.30279 -18.48383 -17.90535 -17.01349 -16.82558 -16.62300 -16.24587 -15.38879 -15.25913 -14.86852 -14.71826 -14.46444 -14.11950 -13.99319 -13.74908 -13.69358 -13.34637 -13.17620 -12.84746 -12.79510 -12.70240 -12.35364 -12.19958 -11.87321 -11.29830 -11.25337 -11.19474 -11.13194 -10.84879 -10.69394 -10.35848 -10.22471 -10.15887 -9.77172 -9.49895 -9.41255 -9.17914 -9.03146 -8.81043 -8.66860 -6.89857 -5.83029 -3.17224 -0.02552 0.40238 1.55347 1.69628 2.50729 2.88755 3.35682 3.37477 3.41846 3.43905 3.56722 3.85168 4.05452 4.10978 4.30946 4.39552 4.44151 4.48735 4.59809 4.66995 4.78719 4.84856 4.95542 5.25797 5.33536 5.35416 5.40814 5.44703 5.46803 5.62607 5.68251 5.77040 5.85430 5.88034 5.93228 5.94601 6.07815 6.19676 6.27760 6.51950 6.62228 6.66780 6.88193 7.31542 7.34660 7.49339 7.50102 7.68948 8.02718 8.17885 9.07986 9.70879 10.47611 11.31322 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028160 B = 0.001708 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.063551 B =16388.154055 C =17011.741043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.398 5.398 3 N -0.007 5.007 4 N -0.207 5.207 5 C -0.029 4.029 6 C 0.036 3.964 7 C -0.149 4.149 8 C 0.561 3.439 9 O -0.536 6.536 10 N -0.717 5.717 11 C 0.154 3.846 12 C -0.151 4.151 13 H 0.103 0.897 14 C -0.172 4.172 15 H 0.103 0.897 16 C 0.154 3.846 17 N -0.594 5.594 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.183 3.817 27 C -0.161 4.161 28 H 0.104 0.896 29 C -0.038 4.038 30 C -0.126 4.126 31 C 0.105 3.895 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.401 0.599 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.023 0.977 41 H 0.254 0.746 42 H 0.023 0.977 43 H 0.090 0.910 44 H 0.144 0.856 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.941 23.342 1.408 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.192 5.192 3 N 0.012 4.988 4 N -0.086 5.086 5 C -0.152 4.152 6 C 0.013 3.987 7 C -0.155 4.155 8 C 0.348 3.652 9 O -0.414 6.414 10 N -0.369 5.369 11 C 0.031 3.969 12 C -0.170 4.170 13 H 0.121 0.879 14 C -0.191 4.191 15 H 0.121 0.879 16 C 0.028 3.972 17 N -0.318 5.318 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.562 5.562 22 Si 0.742 3.258 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.058 3.942 27 C -0.181 4.181 28 H 0.122 0.878 29 C -0.060 4.060 30 C -0.148 4.148 31 C -0.018 4.018 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.172 0.828 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.108 0.892 44 H 0.162 0.838 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.099 24.885 1.328 27.702 hybrid contribution -0.568 -2.020 0.214 2.109 sum -12.667 22.865 1.542 26.185 Atomic orbital electron populations 1.22055 0.72532 1.05431 1.04331 1.50146 1.07999 1.03481 1.57563 1.81665 0.94027 1.07537 1.15531 1.74887 1.11203 1.10389 1.12132 1.19798 0.93066 0.90222 1.12123 1.20586 0.98565 0.89912 0.89609 1.19708 0.93613 0.93342 1.08867 1.17956 0.88257 0.82252 0.76777 1.90806 1.22169 1.78584 1.49853 1.45921 1.10818 1.05372 1.74746 1.20926 0.87934 0.85557 1.02437 1.22524 1.01051 0.90112 1.03299 0.87915 1.24005 1.04324 0.99390 0.91422 0.87865 1.21130 0.93233 0.86858 0.96011 1.45206 1.64729 1.04982 1.16859 1.18996 1.41841 0.81531 0.93187 0.90591 1.24895 1.02176 0.98055 0.95150 1.69892 1.53281 1.34014 0.98975 0.86108 0.77976 0.84066 0.77627 1.21523 1.21537 1.20499 1.21066 0.98405 0.86163 0.88580 1.24238 0.96786 0.96026 1.01069 0.87815 1.20963 0.90800 1.00236 0.94030 1.19706 1.00665 0.87942 1.06492 1.19508 0.90933 0.90645 1.00667 0.89749 0.88313 0.88775 0.82783 0.76360 0.90804 0.91121 0.93217 0.95896 0.93548 0.95863 0.89184 0.83841 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.27 11.52 59.84 0.69 0.96 16 2 N -0.40 -3.12 4.11 -65.44 -0.27 -3.39 16 3 N -0.01 -0.08 13.72 60.35 0.83 0.75 16 4 N -0.21 -2.49 12.40 32.15 0.40 -2.09 16 5 C -0.03 -0.31 7.26 -84.77 -0.62 -0.92 16 6 C 0.04 0.38 9.64 -38.76 -0.37 0.00 16 7 C -0.15 -1.40 5.87 -105.03 -0.62 -2.02 16 8 C 0.56 6.59 7.76 -12.39 -0.10 6.49 16 9 O -0.54 -8.30 16.31 5.31 0.09 -8.21 16 10 N -0.72 -7.40 5.50 -61.29 -0.34 -7.73 16 11 C 0.15 1.91 5.95 -4.05 -0.02 1.89 16 12 C -0.15 -2.12 5.39 -90.62 -0.49 -2.61 16 13 H 0.10 1.40 8.04 -51.93 -0.42 0.99 16 14 C -0.17 -2.84 6.74 -89.22 -0.60 -3.45 16 15 H 0.10 1.59 8.12 -51.93 -0.42 1.17 16 16 C 0.15 3.06 7.04 -2.41 -0.02 3.05 16 17 N -0.59 -14.78 3.38 -168.86 -0.57 -15.36 16 18 C -0.23 -6.21 10.35 -15.06 -0.16 -6.37 16 19 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 20 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 21 N -0.92 -26.31 10.87 55.49 0.60 -25.70 16 22 Si 0.91 21.58 29.56 -169.99 -5.03 16.55 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.18 4.24 5.70 -2.41 -0.01 4.23 16 27 C -0.16 -2.88 6.85 -89.22 -0.61 -3.49 16 28 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 29 C -0.04 -0.25 9.46 -39.54 -0.37 -0.62 16 30 C -0.13 -0.76 9.97 -39.89 -0.40 -1.16 16 31 C 0.10 0.89 6.93 -84.10 -0.58 0.31 16 32 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.09 0.06 8.14 -51.92 -0.42 -0.36 16 35 H 0.15 1.61 7.62 -52.49 -0.40 1.21 16 36 H 0.40 3.04 6.40 -40.82 -0.26 2.78 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 2.36 6.52 -51.93 -0.34 2.02 16 44 H 0.14 0.56 6.36 -52.49 -0.33 0.22 16 45 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -34.60 379.37 -8.88 -43.47 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.94 Total: -0.05 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -4.37 Total: -3.95 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.65 Total: -53.52 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.60 -8.88 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978345030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.423 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds