Wall clock time and date at job start Wed Apr 1 2020 01:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40231 * 126.65557 * 2 1 4 4 N 1.28646 * 109.50880 * 179.97438 * 3 2 1 5 5 C 1.35425 * 110.12676 * 0.02562 * 4 3 2 6 6 C 1.39802 * 133.03929 * 180.02562 * 5 4 3 7 7 C 1.38886 * 119.55876 * 179.97438 * 6 5 4 8 8 C 1.47718 * 119.86042 * 180.02562 * 7 6 5 9 9 O 1.21563 * 120.00083 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99764 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00137 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47473 * 180.02562 * 11 10 8 13 13 H 1.08997 * 115.51088 * 29.58587 * 12 11 10 14 14 C 1.53002 * 117.44419 * 244.24405 * 12 11 10 15 15 H 1.09005 * 119.53854 * 4.11688 * 14 12 11 16 16 C 1.54380 * 118.12315 * 160.80651 * 14 12 11 17 17 N 1.48143 * 104.62170 * 87.19193 * 16 14 12 18 18 C 1.36932 * 127.84342 * 140.43318 * 17 16 14 19 19 H 1.08000 * 119.99823 * 344.38565 * 18 17 16 20 20 C 1.38812 * 120.00095 * 164.38671 * 18 17 16 21 21 N 1.31620 * 120.00362 * 350.81155 * 20 18 17 22 22 Si 1.86799 * 119.99940 * 170.81159 * 20 18 17 23 23 H 1.48502 * 109.46983 * 94.81223 * 22 20 18 24 24 H 1.48507 * 109.47330 * 214.80997 * 22 20 18 25 25 H 1.48497 * 109.47260 * 334.81140 * 22 20 18 26 26 C 1.48150 * 104.31837 * 320.41377 * 17 16 14 27 27 C 1.52996 * 117.44546 * 175.00237 * 12 11 10 28 28 H 1.09006 * 119.54125 * 355.88049 * 27 12 11 29 29 C 1.40256 * 120.27042 * 0.02562 * 7 6 5 30 30 C 1.36258 * 120.45585 * 359.97438 * 29 7 6 31 31 C 1.37264 * 126.66135 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47562 * 269.99761 * 1 2 3 33 33 H 1.09004 * 109.47593 * 30.00362 * 1 2 3 34 34 H 1.09007 * 109.47289 * 149.99977 * 1 2 3 35 35 H 1.07994 * 120.22258 * 359.93551 * 6 5 4 36 36 H 0.96997 * 119.99744 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47145 * 300.00433 * 11 10 8 38 38 H 1.09007 * 109.47118 * 60.00217 * 11 10 8 39 39 H 1.09000 * 110.40859 * 205.97709 * 16 14 12 40 40 H 1.09003 * 110.41037 * 328.28547 * 16 14 12 41 41 H 0.96994 * 120.00404 * 179.97438 * 21 20 18 42 42 H 1.09000 * 110.41126 * 280.79856 * 26 17 16 43 43 H 1.09003 * 110.40368 * 158.36651 * 26 17 16 44 44 H 1.07997 * 119.76915 * 179.71991 * 29 7 6 45 45 H 1.07999 * 119.92333 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3021 1.1250 0.0000 4 7 3.5314 0.7457 0.0005 5 6 3.6018 -0.6067 0.0004 6 6 4.6718 -1.5064 0.0012 7 6 4.4187 -2.8720 0.0012 8 6 5.5443 -3.8287 0.0027 9 8 6.6892 -3.4201 0.0034 10 7 5.3018 -5.1545 0.0033 11 6 6.4180 -6.1032 0.0042 12 6 5.8724 -7.5326 0.0040 13 1 4.9062 -7.6663 -0.4823 14 6 6.1715 -8.4016 1.2273 15 1 6.6952 -7.9682 2.0794 16 6 5.2897 -9.6456 1.4693 17 7 5.9404 -10.7229 0.6879 18 6 6.1056 -12.0353 1.0422 19 1 5.9752 -12.3374 2.0708 20 6 6.4405 -12.9773 0.0792 21 7 6.4228 -12.6503 -1.1956 22 14 6.9165 -14.7091 0.5926 23 1 5.7215 -15.5888 0.5340 24 1 7.9595 -15.2292 -0.3277 25 1 7.4468 -14.6862 1.9794 26 6 6.3715 -10.0584 -0.5640 27 6 6.8848 -8.6738 -0.1134 28 1 7.9400 -8.4431 -0.2602 29 6 3.0988 -3.3464 -0.0001 30 6 2.0516 -2.4747 -0.0009 31 6 2.2845 -1.1011 0.0005 32 1 -0.3634 0.0000 1.0276 33 1 -0.3634 0.8900 -0.5139 34 1 -0.3634 -0.8900 -0.5139 35 1 5.6884 -1.1421 0.0012 36 1 4.3882 -5.4804 0.0031 37 1 7.0280 -5.9474 -0.8857 38 1 7.0273 -5.9466 0.8944 39 1 5.2748 -9.9005 2.5290 40 1 4.2767 -9.4697 1.1073 41 1 6.6572 -13.3084 -1.8685 42 1 5.5281 -9.9477 -1.2455 43 1 7.1729 -10.6248 -1.0384 44 1 2.9113 -4.4100 -0.0046 45 1 1.0387 -2.8494 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978345030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:57 Heat of formation + Delta-G solvation = 120.301184 kcal Electronic energy + Delta-G solvation = -27630.580329 eV Core-core repulsion = 23651.177387 eV Total energy + Delta-G solvation = -3979.402943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.19993 -41.09685 -40.24534 -38.22171 -36.37931 -35.75700 -35.01794 -32.79795 -31.83121 -31.58401 -28.98826 -28.77515 -28.41725 -26.82005 -25.02358 -24.37316 -22.83060 -22.24816 -22.01171 -21.27256 -20.79550 -19.33253 -18.79012 -18.44341 -17.76806 -17.21314 -17.08684 -16.79264 -16.35084 -16.06476 -15.85304 -15.30384 -15.19390 -15.08980 -14.60882 -14.51107 -14.37964 -14.14445 -14.12097 -13.83407 -13.48982 -13.31681 -13.15771 -13.05989 -12.84761 -12.74274 -12.68383 -12.29259 -11.93957 -11.91497 -11.88263 -11.73686 -11.72347 -11.25355 -10.89058 -10.66627 -10.52066 -10.17198 -9.97516 -9.42753 -8.86959 -7.89859 -5.25146 -0.67846 -0.25719 1.04978 1.08337 1.47630 1.49029 1.58596 1.71168 1.98820 2.49389 2.65064 2.77012 2.95830 3.28439 3.35588 3.49667 3.61612 3.70295 3.75151 3.86171 3.90034 3.98696 4.21606 4.27454 4.33372 4.38341 4.45839 4.49150 4.61454 4.67116 4.70739 4.77915 4.79618 4.85938 4.99267 5.07433 5.08181 5.09541 5.22877 5.35963 5.39699 5.47052 5.48702 5.58308 5.60001 5.70618 6.21298 6.52372 6.80453 7.04134 7.17232 7.71698 8.49617 9.23867 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028160 B = 0.001708 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.063551 B =16388.154055 C =17011.741043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.386 5.386 3 N -0.031 5.031 4 N -0.245 5.245 5 C -0.051 4.051 6 C 0.017 3.983 7 C -0.147 4.147 8 C 0.562 3.438 9 O -0.580 6.580 10 N -0.703 5.703 11 C 0.162 3.838 12 C -0.105 4.105 13 H 0.116 0.884 14 C -0.161 4.161 15 H 0.123 0.877 16 C 0.149 3.851 17 N -0.622 5.622 18 C -0.239 4.239 19 H 0.080 0.920 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.977 3.023 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.269 1.269 26 C 0.189 3.811 27 C -0.179 4.179 28 H 0.111 0.889 29 C -0.034 4.034 30 C -0.107 4.107 31 C 0.100 3.900 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.417 0.583 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.033 0.967 41 H 0.249 0.751 42 H 0.005 0.995 43 H 0.050 0.950 44 H 0.179 0.821 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.626 23.368 2.388 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.180 5.180 3 N -0.011 5.011 4 N -0.123 5.123 5 C -0.176 4.176 6 C -0.006 4.006 7 C -0.154 4.154 8 C 0.351 3.649 9 O -0.461 6.461 10 N -0.355 5.355 11 C 0.038 3.962 12 C -0.124 4.124 13 H 0.134 0.866 14 C -0.180 4.180 15 H 0.140 0.860 16 C 0.024 3.976 17 N -0.346 5.346 18 C -0.368 4.368 19 H 0.097 0.903 20 C -0.257 4.257 21 N -0.594 5.594 22 Si 0.805 3.195 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.194 1.194 26 C 0.063 3.937 27 C -0.199 4.199 28 H 0.129 0.871 29 C -0.056 4.056 30 C -0.128 4.128 31 C -0.024 4.024 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.256 0.744 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.023 0.977 43 H 0.068 0.932 44 H 0.196 0.804 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.845 24.948 2.335 29.125 hybrid contribution 0.143 -1.997 -0.076 2.004 sum -14.702 22.951 2.259 27.349 Atomic orbital electron populations 1.22573 0.69556 1.07419 1.06061 1.50527 1.09449 1.02507 1.55566 1.81553 0.94195 1.09024 1.16351 1.74845 1.12110 1.11554 1.13842 1.20003 0.94463 0.90019 1.13077 1.20498 0.98025 0.90714 0.91405 1.19578 0.94301 0.92164 1.09324 1.18260 0.88200 0.82693 0.75796 1.90792 1.24123 1.79300 1.51886 1.45704 1.11216 1.04592 1.74031 1.20716 0.88409 0.84663 1.02362 1.22408 1.00019 0.89677 1.00290 0.86585 1.23930 1.03240 0.98895 0.91958 0.85964 1.21300 0.93877 0.86772 0.95675 1.45530 1.65808 1.05323 1.17924 1.19368 1.40925 0.83055 0.93417 0.90256 1.25702 1.02919 1.01822 0.95231 1.70082 1.54670 1.34850 0.99839 0.85095 0.77353 0.79581 0.77468 1.21188 1.22082 1.19366 1.20795 0.96426 0.88475 0.87969 1.23914 0.98104 0.95204 1.02725 0.87143 1.21284 0.89185 1.02043 0.93069 1.20168 1.02579 0.86266 1.03835 1.19856 0.90046 0.91871 1.00579 0.88048 0.87447 0.85783 0.84492 0.74365 0.91103 0.91254 0.92716 0.94955 0.94182 0.97675 0.93199 0.80419 0.79938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.17 11.52 127.77 1.47 1.64 16 2 N -0.39 -5.27 4.11 -360.94 -1.48 -6.75 16 3 N -0.03 -0.67 13.72 37.02 0.51 -0.16 16 4 N -0.25 -6.15 12.40 -52.21 -0.65 -6.80 16 5 C -0.05 -1.10 7.26 39.57 0.29 -0.81 16 6 C 0.02 0.36 9.64 22.80 0.22 0.58 16 7 C -0.15 -2.52 5.87 -20.13 -0.12 -2.64 16 8 C 0.56 12.30 7.76 86.75 0.67 12.98 16 9 O -0.58 -17.89 16.31 -3.91 -0.06 -17.95 16 10 N -0.70 -12.23 5.50 -466.10 -2.57 -14.80 16 11 C 0.16 3.56 5.95 86.38 0.51 4.08 16 12 C -0.11 -2.64 5.39 -10.79 -0.06 -2.69 16 13 H 0.12 2.71 8.04 -2.39 -0.02 2.69 16 14 C -0.16 -4.90 6.74 -9.89 -0.07 -4.97 16 15 H 0.12 3.34 8.12 -2.38 -0.02 3.32 16 16 C 0.15 5.65 7.04 86.53 0.61 6.26 16 17 N -0.62 -30.96 3.38 -688.16 -2.33 -33.28 16 18 C -0.24 -13.11 10.35 84.03 0.87 -12.24 16 19 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 20 C -0.06 -3.52 5.40 84.86 0.46 -3.07 16 21 N -0.95 -55.94 10.87 21.65 0.24 -55.71 16 22 Si 0.98 44.82 29.56 68.60 2.03 46.85 16 23 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.19 8.88 5.70 86.53 0.49 9.38 16 27 C -0.18 -6.22 6.85 -9.89 -0.07 -6.29 16 28 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 29 C -0.03 -0.30 9.46 22.30 0.21 -0.09 16 30 C -0.11 -0.81 9.97 22.07 0.22 -0.59 16 31 C 0.10 1.48 6.93 39.16 0.27 1.75 16 32 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 34 H 0.12 -0.45 8.14 -2.38 -0.02 -0.47 16 35 H 0.14 3.19 7.62 -2.91 -0.02 3.17 16 36 H 0.42 4.38 6.40 -92.71 -0.59 3.79 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.63 7.94 -2.38 -0.02 1.61 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.05 2.72 6.52 -2.39 -0.02 2.70 16 44 H 0.18 0.32 6.36 -2.91 -0.02 0.30 16 45 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 Total: -1.00 -80.22 379.37 2.12 -78.11 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.44 Total: 7.22 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 5.99 Total: 3.27 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -6.28 Total: -117.50 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.06 Total: -17.95 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -80.22 2.12 -78.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978345030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.409 kcal (2) G-P(sol) polarization free energy of solvation -80.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds