Wall clock time and date at job start Wed Apr 1 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39794 * 125.34292 * 2 1 4 4 C 1.30205 * 110.13304 * 179.83872 * 3 2 1 5 5 C 1.45971 * 107.58669 * 0.41411 * 4 3 2 6 6 C 1.39654 * 134.12083 * 179.76679 * 5 4 3 7 7 C 1.39505 * 117.94833 * 179.97438 * 6 5 4 8 8 C 1.47696 * 120.40712 * 180.02562 * 7 6 5 9 9 O 1.21574 * 119.99668 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99685 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99748 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.46960 * 180.02562 * 11 10 8 13 13 H 1.09001 * 115.52143 * 29.58689 * 12 11 10 14 14 C 1.53003 * 117.44263 * 244.24313 * 12 11 10 15 15 H 1.09003 * 119.53921 * 4.11636 * 14 12 11 16 16 C 1.57693 * 116.11199 * 161.64150 * 14 12 11 17 17 N 1.48148 * 104.67558 * 87.30427 * 16 14 12 18 18 C 1.36937 * 127.83618 * 139.77124 * 17 16 14 19 19 H 1.08006 * 120.00147 * 344.34391 * 18 17 16 20 20 C 1.38808 * 119.99906 * 164.33942 * 18 17 16 21 21 N 1.31617 * 120.00217 * 350.57363 * 20 18 17 22 22 Si 1.86801 * 120.00163 * 170.57192 * 20 18 17 23 23 H 1.48507 * 109.47323 * 89.99912 * 22 20 18 24 24 H 1.48501 * 109.47520 * 209.99994 * 22 20 18 25 25 H 1.48499 * 109.47299 * 330.00364 * 22 20 18 26 26 C 1.48144 * 104.32452 * 319.77547 * 17 16 14 27 27 C 1.53004 * 117.44299 * 175.00247 * 12 11 10 28 28 H 1.09001 * 119.53882 * 355.88749 * 27 12 11 29 29 C 1.40180 * 119.18230 * 359.97438 * 7 6 5 30 30 N 1.31191 * 121.37601 * 0.02562 * 29 7 6 31 31 C 1.32925 * 121.84080 * 0.02562 * 30 29 7 32 32 H 1.08998 * 109.47078 * 269.69339 * 1 2 3 33 33 H 1.09008 * 109.46719 * 29.69232 * 1 2 3 34 34 H 1.08993 * 109.47097 * 149.68857 * 1 2 3 35 35 H 1.08003 * 126.20760 * 180.17678 * 4 3 2 36 36 H 1.07994 * 121.02660 * 359.95106 * 6 5 4 37 37 H 0.96994 * 120.00572 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47259 * 300.00172 * 11 10 8 39 39 H 1.09005 * 109.46467 * 60.00326 * 11 10 8 40 40 H 1.08998 * 110.92209 * 328.23140 * 16 14 12 41 41 H 1.08997 * 109.94081 * 205.88808 * 16 14 12 42 42 H 0.97004 * 120.00290 * 180.02562 * 21 20 18 43 43 H 1.08990 * 110.40939 * 280.80037 * 26 17 16 44 44 H 1.09006 * 110.40808 * 158.36395 * 26 17 16 45 45 H 1.08006 * 119.31290 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5301 0.7987 0.0034 5 6 3.5907 -0.6597 -0.0041 6 6 4.6327 -1.5895 -0.0088 7 6 4.3001 -2.9443 -0.0153 8 6 5.3589 -3.9740 -0.0199 9 8 6.5287 -3.6430 -0.0185 10 7 5.0282 -5.2805 -0.0256 11 6 6.0784 -6.3020 -0.0308 12 6 5.4383 -7.6915 -0.0374 13 1 4.4648 -7.7578 -0.5232 14 6 5.6795 -8.5848 1.1812 15 1 6.2318 -8.1917 2.0348 16 6 4.6805 -9.7908 1.3663 17 7 5.2719 -10.8932 0.5726 18 6 5.3390 -12.2213 0.8994 19 1 5.1674 -12.5361 1.9182 20 6 5.6276 -13.1630 -0.0787 21 7 5.6534 -12.8087 -1.3461 22 14 5.9792 -14.9330 0.4036 23 1 4.7097 -15.7034 0.4194 24 1 6.9130 -15.5380 -0.5799 25 1 6.5945 -14.9651 1.7548 26 6 5.7742 -10.2327 -0.6546 27 6 6.3719 -8.8974 -0.1617 28 1 7.4401 -8.7371 -0.3084 29 6 2.9485 -3.3163 -0.0163 30 7 1.9928 -2.4176 -0.0118 31 6 2.2554 -1.1146 -0.0065 32 1 -0.3633 -0.0055 1.0276 33 1 -0.3633 0.8928 -0.5091 34 1 -0.3633 -0.8871 -0.5186 35 1 4.3744 1.4723 0.0070 36 1 5.6642 -1.2696 -0.0078 37 1 4.0949 -5.5447 -0.0264 38 1 6.6967 -6.1829 -0.9205 39 1 6.6975 -6.1909 0.8595 40 1 3.6905 -9.5380 0.9867 41 1 4.6237 -10.0683 2.4188 42 1 5.8547 -13.4669 -2.0297 43 1 4.9551 -10.0489 -1.3497 44 1 6.5446 -10.8427 -1.1264 45 1 2.6886 -4.3646 -0.0209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978911383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:38 Heat of formation + Delta-G solvation = 113.427530 kcal Electronic energy + Delta-G solvation = -27634.389194 eV Core-core repulsion = 23654.688188 eV Total energy + Delta-G solvation = -3979.701007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.70799 -40.98400 -40.13514 -38.81991 -36.36298 -35.02599 -34.90148 -32.95501 -32.61786 -31.48906 -29.00066 -28.63501 -27.84212 -26.63695 -25.03022 -24.55985 -22.77978 -22.02612 -21.96984 -21.24418 -20.80914 -19.05783 -18.79155 -18.75556 -17.87282 -16.97993 -16.85929 -16.82064 -16.38513 -16.26524 -15.88389 -15.30428 -15.16054 -14.99498 -14.63711 -14.55053 -14.50893 -14.33741 -14.13688 -14.03042 -13.44810 -13.34116 -13.29707 -13.15517 -12.84872 -12.68148 -12.29184 -12.24852 -11.93327 -11.85783 -11.73296 -11.61152 -11.40365 -10.92101 -10.67802 -10.63652 -10.48378 -10.23685 -10.05558 -9.41528 -8.87842 -7.90505 -5.25887 -0.35821 -0.32374 1.06301 1.34817 1.47234 1.48710 1.58045 1.77782 2.03099 2.48985 2.71206 2.80243 3.01796 3.17723 3.27901 3.49252 3.60458 3.66042 3.74985 3.77071 3.91022 3.96156 4.23364 4.25906 4.32420 4.36629 4.37562 4.41462 4.48350 4.61960 4.65100 4.71865 4.79658 4.91570 4.97069 5.06201 5.10805 5.23843 5.33237 5.38659 5.46801 5.48114 5.57318 5.64479 5.70004 6.20414 6.27446 6.50528 6.69537 7.03323 7.16584 7.70918 8.49123 9.23285 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.001722 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.538622 B =16256.206356 C =16905.411774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.400 5.400 3 N -0.264 5.264 4 C 0.109 3.891 5 C -0.252 4.252 6 C 0.078 3.922 7 C -0.242 4.242 8 C 0.574 3.426 9 O -0.576 6.576 10 N -0.708 5.708 11 C 0.164 3.836 12 C -0.112 4.112 13 H 0.112 0.888 14 C -0.158 4.158 15 H 0.130 0.870 16 C 0.148 3.852 17 N -0.621 5.621 18 C -0.240 4.240 19 H 0.080 0.920 20 C -0.063 4.063 21 N -0.947 5.947 22 Si 0.978 3.022 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.269 1.269 26 C 0.189 3.811 27 C -0.178 4.178 28 H 0.111 0.889 29 C 0.211 3.789 30 N -0.520 5.520 31 C 0.310 3.690 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.245 0.755 36 H 0.166 0.834 37 H 0.414 0.586 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.053 0.947 42 H 0.249 0.751 43 H 0.003 0.997 44 H 0.050 0.950 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 28.746 2.881 29.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.190 5.190 3 N -0.075 5.075 4 C -0.089 4.089 5 C -0.262 4.262 6 C 0.050 3.950 7 C -0.250 4.250 8 C 0.362 3.638 9 O -0.457 6.457 10 N -0.360 5.360 11 C 0.041 3.959 12 C -0.131 4.131 13 H 0.130 0.870 14 C -0.178 4.178 15 H 0.147 0.853 16 C 0.023 3.977 17 N -0.345 5.345 18 C -0.368 4.368 19 H 0.097 0.903 20 C -0.257 4.257 21 N -0.594 5.594 22 Si 0.806 3.194 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.194 1.194 26 C 0.063 3.937 27 C -0.199 4.199 28 H 0.129 0.871 29 C 0.041 3.959 30 N -0.234 5.234 31 C 0.070 3.930 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.261 0.739 36 H 0.184 0.816 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.021 0.979 44 H 0.068 0.932 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -8.182 29.525 2.815 30.767 hybrid contribution 1.019 -1.882 -0.137 2.144 sum -7.163 27.644 2.678 28.682 Atomic orbital electron populations 1.22088 0.71705 1.05528 1.04366 1.48486 1.07512 0.99792 1.63180 1.76754 1.03506 1.07627 1.19642 1.25832 0.95393 0.92185 0.95477 1.20679 0.93591 0.95873 1.16034 1.21338 0.99916 0.89852 0.83896 1.20536 0.94725 0.94333 1.15384 1.17953 0.87729 0.82503 0.75596 1.90778 1.20678 1.82091 1.52178 1.45760 1.11241 1.04733 1.74299 1.20718 0.89303 0.83469 1.02455 1.22453 1.00257 0.89636 1.00788 0.87019 1.24645 1.02260 0.98875 0.91979 0.85255 1.21891 0.93586 0.86796 0.95447 1.45464 1.66514 1.03000 1.19552 1.19359 1.41835 0.81807 0.93835 0.90258 1.25715 1.02791 1.02059 0.95125 1.70089 1.55364 1.34351 0.99643 0.85100 0.77449 0.79528 0.77339 1.21097 1.21999 1.19427 1.20811 0.95545 0.89133 0.88199 1.23857 0.98443 0.94875 1.02707 0.87063 1.23286 0.86245 0.99386 0.87031 1.66738 1.37802 0.98744 1.20165 1.19501 0.89679 0.88589 0.95235 0.89989 0.87850 0.88669 0.73945 0.81649 0.74793 0.91002 0.91004 0.94939 0.92831 0.94169 0.97883 0.93181 0.78758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 11.43 127.77 1.46 2.55 16 2 N -0.40 -6.95 4.03 -366.43 -1.48 -8.43 16 3 N -0.26 -4.37 12.39 -53.08 -0.66 -5.03 16 4 C 0.11 1.36 12.30 86.94 1.07 2.43 16 5 C -0.25 -4.19 6.36 -20.24 -0.13 -4.32 16 6 C 0.08 1.29 9.76 22.92 0.22 1.51 16 7 C -0.24 -4.25 5.89 -20.00 -0.12 -4.37 16 8 C 0.57 12.21 7.77 86.74 0.67 12.88 16 9 O -0.58 -16.37 16.40 -3.95 -0.06 -16.44 16 10 N -0.71 -12.86 5.51 -466.11 -2.57 -15.43 16 11 C 0.16 3.62 5.95 86.38 0.51 4.14 16 12 C -0.11 -2.92 5.34 -10.79 -0.06 -2.98 16 13 H 0.11 2.80 8.04 -2.39 -0.02 2.79 16 14 C -0.16 -4.89 7.03 -8.69 -0.06 -4.95 16 15 H 0.13 3.51 8.12 -2.39 -0.02 3.49 16 16 C 0.15 5.78 7.10 87.72 0.62 6.40 16 17 N -0.62 -31.42 3.38 -681.43 -2.30 -33.73 16 18 C -0.24 -13.31 10.35 84.03 0.87 -12.44 16 19 H 0.08 4.22 7.85 -2.91 -0.02 4.19 16 20 C -0.06 -3.57 5.39 84.86 0.46 -3.11 16 21 N -0.95 -56.51 10.88 21.65 0.24 -56.28 16 22 Si 0.98 45.22 29.56 68.60 2.03 47.25 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.19 9.01 5.70 86.53 0.49 9.50 16 27 C -0.18 -6.28 6.77 -9.88 -0.07 -6.35 16 28 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 29 C 0.21 3.28 10.69 85.26 0.91 4.19 16 30 N -0.52 -9.89 10.37 -191.96 -1.99 -11.88 16 31 C 0.31 6.01 7.96 134.17 1.07 7.08 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.24 0.71 8.06 -2.91 -0.02 0.68 16 36 H 0.17 2.28 7.72 -2.91 -0.02 2.26 16 37 H 0.41 5.26 6.44 -92.71 -0.60 4.66 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.65 7.94 -2.38 -0.02 1.63 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.05 2.75 6.53 -2.38 -0.02 2.74 16 45 H 0.20 1.76 6.39 -2.91 -0.02 1.74 16 Total: -1.00 -76.72 380.16 1.57 -75.15 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.44 Total: 12.65 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 7.93 Total: 12.16 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -8.76 Total: -130.77 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.06 Total: -16.44 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -76.72 1.57 -75.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978911383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.580 kcal (2) G-P(sol) polarization free energy of solvation -76.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds