Wall clock time and date at job start Wed Apr 1 2020 01:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28812 * 125.94464 * 2 1 4 4 N 1.28637 * 111.79618 * 180.02562 * 3 2 1 5 5 C 1.34751 * 109.29276 * 359.97438 * 4 3 2 6 6 C 1.39907 * 134.59276 * 180.02562 * 5 4 3 7 7 C 1.36158 * 119.98025 * 179.97438 * 6 5 4 8 8 C 1.40256 * 120.55272 * 359.97438 * 7 6 5 9 9 C 1.47720 * 119.87766 * 180.02562 * 8 7 6 10 10 O 1.21576 * 120.00037 * 179.97438 * 9 8 7 11 11 N 1.34774 * 120.00362 * 359.97438 * 9 8 7 12 12 C 1.46497 * 120.00251 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47190 * 180.02562 * 12 11 9 14 14 H 1.08996 * 115.49329 * 330.37973 * 13 12 11 15 15 C 1.52996 * 117.44439 * 185.00347 * 13 12 11 16 16 H 1.09006 * 119.53892 * 4.11162 * 15 13 12 17 17 C 1.54387 * 118.12656 * 159.21457 * 15 13 12 18 18 N 1.48141 * 104.62112 * 89.20287 * 17 15 13 19 19 C 1.36942 * 127.83878 * 140.41419 * 18 17 15 20 20 H 1.07997 * 119.99705 * 195.57674 * 19 18 17 21 21 C 1.38808 * 119.99543 * 15.57810 * 19 18 17 22 22 N 1.31623 * 120.00644 * 9.09519 * 21 19 18 23 23 Si 1.86803 * 119.99642 * 189.09560 * 21 19 18 24 24 H 1.48497 * 109.47031 * 60.00237 * 23 21 19 25 25 H 1.48505 * 109.47109 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47456 * 300.00030 * 23 21 19 27 27 C 1.48150 * 104.32544 * 320.41799 * 18 17 15 28 28 C 1.54290 * 61.50022 * 251.67050 * 15 13 12 29 29 H 1.08996 * 121.81859 * 109.76323 * 28 15 13 30 30 C 1.39163 * 120.24461 * 0.29165 * 8 7 6 31 31 C 1.37372 * 125.94323 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46554 * 269.95545 * 1 2 3 33 33 H 1.08993 * 109.46957 * 29.95624 * 1 2 3 34 34 H 1.08999 * 109.47166 * 149.95979 * 1 2 3 35 35 H 1.08003 * 120.01072 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.72479 * 179.97438 * 7 6 5 37 37 H 0.97003 * 119.99711 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.47372 * 60.00331 * 12 11 9 39 39 H 1.08998 * 109.47605 * 300.00032 * 12 11 9 40 40 H 1.09000 * 110.40976 * 207.99453 * 17 15 13 41 41 H 1.09002 * 110.40152 * 330.42132 * 17 15 13 42 42 H 0.96997 * 120.00218 * 179.97438 * 22 21 19 43 43 H 1.09001 * 110.40610 * 158.36285 * 27 18 17 44 44 H 1.08995 * 110.40575 * 280.68622 * 27 18 17 45 45 H 1.08000 * 120.24977 * 179.71075 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2212 1.0428 0.0000 4 7 3.4685 0.7284 -0.0005 5 6 3.5893 -0.6137 -0.0004 6 6 4.6697 -1.5026 -0.0003 7 6 4.4457 -2.8457 0.0004 8 6 3.1371 -3.3502 0.0016 9 6 2.9112 -4.8101 0.0030 10 8 1.7778 -5.2499 0.0045 11 7 3.9616 -5.6545 0.0025 12 6 3.7377 -7.1022 0.0044 13 6 5.0853 -7.8268 0.0041 14 1 5.9031 -7.2963 -0.4835 15 6 5.0657 -9.3522 -0.1126 16 1 4.1165 -9.8679 -0.2585 17 6 6.3477 -10.0615 -0.5993 18 7 7.1213 -10.3250 0.6362 19 6 7.8489 -11.4421 0.9495 20 1 8.1563 -11.6175 1.9699 21 6 8.1912 -12.3486 -0.0443 22 7 7.9759 -12.0520 -1.3084 23 14 8.9575 -13.9899 0.4124 24 1 8.0228 -14.7475 1.2826 25 1 9.2283 -14.7703 -0.8217 26 1 10.2313 -13.7564 1.1392 27 6 6.9293 -9.1061 1.4560 28 6 5.4491 -8.7223 1.2427 29 1 4.7919 -8.7812 2.1103 30 6 2.0505 -2.4807 -0.0040 31 6 2.2714 -1.1122 -0.0005 32 1 -0.3632 -0.0008 1.0277 33 1 -0.3633 0.8903 -0.5131 34 1 -0.3633 -0.8896 -0.5144 35 1 5.6811 -1.1237 -0.0008 36 1 5.2827 -3.5281 0.0001 37 1 4.8660 -5.3036 0.0017 38 1 3.1732 -7.3838 -0.8846 39 1 3.1755 -7.3818 0.8954 40 1 6.0980 -10.9977 -1.0985 41 1 6.9108 -9.4112 -1.2689 42 1 8.2155 -12.6853 -2.0029 43 1 7.1182 -9.3217 2.5076 44 1 7.5846 -8.3074 1.1087 45 1 1.0428 -2.8691 -0.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979014934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:01 Heat of formation + Delta-G solvation = 148.588456 kcal Electronic energy + Delta-G solvation = -27689.894701 eV Core-core repulsion = 23711.718386 eV Total energy + Delta-G solvation = -3978.176314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.62367 -40.25355 -38.69186 -37.73840 -35.36785 -35.12762 -33.38082 -31.44176 -31.28345 -30.63823 -28.44072 -27.57203 -27.14555 -25.36727 -24.18529 -23.92012 -21.61217 -21.22313 -21.16221 -20.05468 -19.24160 -18.56187 -18.15842 -17.18596 -17.04768 -16.82591 -16.24909 -15.45351 -15.21053 -14.86619 -14.73729 -14.47282 -14.12527 -14.04121 -13.80551 -13.66833 -13.41472 -13.21785 -12.84635 -12.71807 -12.56326 -12.36900 -12.17360 -11.85384 -11.29885 -11.26393 -11.15922 -11.11583 -10.84287 -10.70344 -10.37727 -10.25851 -10.19049 -9.76585 -9.53452 -9.42348 -9.22905 -8.96627 -8.80504 -8.66069 -6.89684 -5.82473 -3.16920 -0.11467 0.70291 1.65884 1.68478 2.57566 2.86332 3.34153 3.36976 3.41788 3.42843 3.47871 3.93102 3.97632 4.15130 4.29919 4.42581 4.44509 4.53092 4.54238 4.71096 4.77033 4.84644 4.91038 5.22058 5.33972 5.37928 5.42160 5.47270 5.51598 5.67390 5.73859 5.76267 5.80482 5.86557 5.94254 5.96896 6.07788 6.19369 6.23582 6.49949 6.62252 6.67024 6.88806 7.28150 7.32716 7.49968 7.68776 7.84882 7.95060 8.18322 9.08319 9.71171 10.47886 11.31741 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033259 B = 0.001690 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.682827 B =16568.414664 C =17029.906094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.315 5.315 3 N -0.015 5.015 4 N -0.257 5.257 5 C 0.028 3.972 6 C -0.053 4.053 7 C -0.090 4.090 8 C -0.100 4.100 9 C 0.559 3.441 10 O -0.538 6.538 11 N -0.714 5.714 12 C 0.155 3.845 13 C -0.153 4.153 14 H 0.104 0.896 15 C -0.158 4.158 16 H 0.102 0.898 17 C 0.182 3.818 18 N -0.594 5.594 19 C -0.229 4.229 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.153 3.847 28 C -0.172 4.172 29 H 0.105 0.895 30 C -0.033 4.033 31 C 0.012 3.988 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.403 0.597 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.023 0.977 42 H 0.255 0.745 43 H 0.050 0.950 44 H 0.024 0.976 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.998 23.106 1.729 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.115 5.115 3 N 0.004 4.996 4 N -0.131 5.131 5 C -0.098 4.098 6 C -0.075 4.075 7 C -0.112 4.112 8 C -0.108 4.108 9 C 0.345 3.655 10 O -0.417 6.417 11 N -0.365 5.365 12 C 0.033 3.967 13 C -0.172 4.172 14 H 0.122 0.878 15 C -0.178 4.178 16 H 0.120 0.880 17 C 0.056 3.944 18 N -0.318 5.318 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.562 5.562 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.027 3.973 28 C -0.192 4.192 29 H 0.123 0.877 30 C -0.055 4.055 31 C -0.107 4.107 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.239 0.761 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.702 24.050 1.628 28.235 hybrid contribution 0.528 -1.740 0.191 1.828 sum -14.174 22.310 1.819 26.495 Atomic orbital electron populations 1.22314 0.71771 1.06231 1.05268 1.47158 1.08963 1.02951 1.52463 1.78010 0.96935 1.12305 1.12343 1.75388 1.07533 1.11279 1.18887 1.20115 0.93243 0.91255 1.05178 1.19952 0.97748 0.91000 0.98764 1.20931 0.96046 0.95265 0.98919 1.19765 0.93367 0.93227 1.04396 1.17993 0.85011 0.85578 0.76903 1.90795 1.22450 1.78410 1.50001 1.45946 1.09170 1.07200 1.74211 1.20895 0.96033 0.77417 1.02405 1.23136 0.96812 0.94053 1.03193 0.87759 1.24212 1.01922 0.91039 1.00657 0.88012 1.21098 0.85964 0.98501 0.88818 1.45199 1.56159 1.13829 1.16603 1.18950 1.26824 0.96634 0.93261 0.90629 1.24895 1.00499 0.99713 0.95120 1.69882 1.52405 1.35470 0.98434 0.86192 0.79056 0.83387 0.77070 1.21066 1.21527 1.20980 1.21154 0.90628 0.89835 0.95710 1.24639 0.99556 1.03793 0.91172 0.87698 1.20047 1.00443 0.87603 0.97451 1.19616 0.91067 0.90820 1.09161 0.88895 0.87658 0.88097 0.83552 0.83901 0.76107 0.90733 0.91103 0.89210 0.95861 0.93482 0.93178 0.95854 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 11.41 59.85 0.68 0.95 16 2 N -0.31 -2.60 3.80 -65.54 -0.25 -2.85 16 3 N -0.02 -0.16 13.07 60.35 0.79 0.63 16 4 N -0.26 -3.04 12.42 32.09 0.40 -2.64 16 5 C 0.03 0.29 7.36 -84.95 -0.63 -0.33 16 6 C -0.05 -0.42 10.03 -39.70 -0.40 -0.82 16 7 C -0.09 -0.66 9.46 -39.57 -0.37 -1.03 16 8 C -0.10 -0.92 5.88 -104.92 -0.62 -1.54 16 9 C 0.56 6.32 7.77 -12.39 -0.10 6.23 16 10 O -0.54 -7.86 16.32 5.30 0.09 -7.78 16 11 N -0.71 -7.28 5.50 -61.29 -0.34 -7.61 16 12 C 0.16 1.89 5.98 -4.04 -0.02 1.87 16 13 C -0.15 -2.14 5.54 -88.38 -0.49 -2.63 16 14 H 0.10 1.43 8.04 -51.93 -0.42 1.01 16 15 C -0.16 -2.82 6.71 -89.22 -0.60 -3.42 16 16 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 17 C 0.18 4.21 5.69 -2.41 -0.01 4.20 16 18 N -0.59 -14.83 3.38 -168.86 -0.57 -15.40 16 19 C -0.23 -6.26 10.35 -15.06 -0.16 -6.41 16 20 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 21 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 22 N -0.92 -26.36 10.86 55.49 0.60 -25.76 16 23 Si 0.91 21.62 29.56 -169.99 -5.03 16.59 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.15 3.06 7.06 -2.40 -0.02 3.04 16 28 C -0.17 -2.85 7.00 -86.98 -0.61 -3.46 16 29 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 30 C -0.03 -0.29 9.59 -39.10 -0.38 -0.67 16 31 C 0.01 0.11 6.94 -84.23 -0.58 -0.47 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.15 0.86 8.06 -52.48 -0.42 0.43 16 36 H 0.14 0.68 6.36 -52.49 -0.33 0.35 16 37 H 0.40 3.12 6.40 -40.82 -0.26 2.86 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.91 8.00 -51.93 -0.42 0.49 16 40 H 0.09 2.35 6.51 -51.93 -0.34 2.01 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.15 1.15 7.63 -52.49 -0.40 0.75 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -34.62 378.85 -8.93 -43.55 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.94 Total: 0.29 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -4.39 Total: -4.74 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.63 Total: -53.63 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.62 -8.93 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979014934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.135 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds