Wall clock time and date at job start Wed Apr 1 2020 01:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28812 * 125.94464 * 2 1 4 4 N 1.28637 * 111.79618 * 180.02562 * 3 2 1 5 5 C 1.34751 * 109.29276 * 359.97438 * 4 3 2 6 6 C 1.39907 * 134.59276 * 180.02562 * 5 4 3 7 7 C 1.36158 * 119.98025 * 179.97438 * 6 5 4 8 8 C 1.40256 * 120.55272 * 359.97438 * 7 6 5 9 9 C 1.47720 * 119.87766 * 180.02562 * 8 7 6 10 10 O 1.21576 * 120.00037 * 179.97438 * 9 8 7 11 11 N 1.34774 * 120.00362 * 359.97438 * 9 8 7 12 12 C 1.46497 * 120.00251 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47190 * 180.02562 * 12 11 9 14 14 H 1.08996 * 115.49329 * 330.37973 * 13 12 11 15 15 C 1.52996 * 117.44439 * 185.00347 * 13 12 11 16 16 H 1.09006 * 119.53892 * 4.11162 * 15 13 12 17 17 C 1.54387 * 118.12656 * 159.21457 * 15 13 12 18 18 N 1.48141 * 104.62112 * 89.20287 * 17 15 13 19 19 C 1.36942 * 127.83878 * 140.41419 * 18 17 15 20 20 H 1.07997 * 119.99705 * 195.57674 * 19 18 17 21 21 C 1.38808 * 119.99543 * 15.57810 * 19 18 17 22 22 N 1.31623 * 120.00644 * 9.09519 * 21 19 18 23 23 Si 1.86803 * 119.99642 * 189.09560 * 21 19 18 24 24 H 1.48497 * 109.47031 * 60.00237 * 23 21 19 25 25 H 1.48505 * 109.47109 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47456 * 300.00030 * 23 21 19 27 27 C 1.48150 * 104.32544 * 320.41799 * 18 17 15 28 28 C 1.54290 * 61.50022 * 251.67050 * 15 13 12 29 29 H 1.08996 * 121.81859 * 109.76323 * 28 15 13 30 30 C 1.39163 * 120.24461 * 0.29165 * 8 7 6 31 31 C 1.37372 * 125.94323 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46554 * 269.95545 * 1 2 3 33 33 H 1.08993 * 109.46957 * 29.95624 * 1 2 3 34 34 H 1.08999 * 109.47166 * 149.95979 * 1 2 3 35 35 H 1.08003 * 120.01072 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.72479 * 179.97438 * 7 6 5 37 37 H 0.97003 * 119.99711 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.47372 * 60.00331 * 12 11 9 39 39 H 1.08998 * 109.47605 * 300.00032 * 12 11 9 40 40 H 1.09000 * 110.40976 * 207.99453 * 17 15 13 41 41 H 1.09002 * 110.40152 * 330.42132 * 17 15 13 42 42 H 0.96997 * 120.00218 * 179.97438 * 22 21 19 43 43 H 1.09001 * 110.40610 * 158.36285 * 27 18 17 44 44 H 1.08995 * 110.40575 * 280.68622 * 27 18 17 45 45 H 1.08000 * 120.24977 * 179.71075 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2212 1.0428 0.0000 4 7 3.4685 0.7284 -0.0005 5 6 3.5893 -0.6137 -0.0004 6 6 4.6697 -1.5026 -0.0003 7 6 4.4457 -2.8457 0.0004 8 6 3.1371 -3.3502 0.0016 9 6 2.9112 -4.8101 0.0030 10 8 1.7778 -5.2499 0.0045 11 7 3.9616 -5.6545 0.0025 12 6 3.7377 -7.1022 0.0044 13 6 5.0853 -7.8268 0.0041 14 1 5.9031 -7.2963 -0.4835 15 6 5.0657 -9.3522 -0.1126 16 1 4.1165 -9.8679 -0.2585 17 6 6.3477 -10.0615 -0.5993 18 7 7.1213 -10.3250 0.6362 19 6 7.8489 -11.4421 0.9495 20 1 8.1563 -11.6175 1.9699 21 6 8.1912 -12.3486 -0.0443 22 7 7.9759 -12.0520 -1.3084 23 14 8.9575 -13.9899 0.4124 24 1 8.0228 -14.7475 1.2826 25 1 9.2283 -14.7703 -0.8217 26 1 10.2313 -13.7564 1.1392 27 6 6.9293 -9.1061 1.4560 28 6 5.4491 -8.7223 1.2427 29 1 4.7919 -8.7812 2.1103 30 6 2.0505 -2.4807 -0.0040 31 6 2.2714 -1.1122 -0.0005 32 1 -0.3632 -0.0008 1.0277 33 1 -0.3633 0.8903 -0.5131 34 1 -0.3633 -0.8896 -0.5144 35 1 5.6811 -1.1237 -0.0008 36 1 5.2827 -3.5281 0.0001 37 1 4.8660 -5.3036 0.0017 38 1 3.1732 -7.3838 -0.8846 39 1 3.1755 -7.3818 0.8954 40 1 6.0980 -10.9977 -1.0985 41 1 6.9108 -9.4112 -1.2689 42 1 8.2155 -12.6853 -2.0029 43 1 7.1182 -9.3217 2.5076 44 1 7.5846 -8.3074 1.1087 45 1 1.0428 -2.8691 -0.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979014934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:00 Heat of formation + Delta-G solvation = 125.536576 kcal Electronic energy + Delta-G solvation = -27690.894305 eV Core-core repulsion = 23711.718386 eV Total energy + Delta-G solvation = -3979.175919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.29060 -41.13805 -40.11564 -38.48340 -36.36622 -35.92068 -34.99534 -32.80473 -31.89360 -31.80682 -29.08240 -28.82583 -28.70235 -26.85838 -25.14236 -24.61899 -22.83626 -22.23391 -22.03182 -21.34109 -20.72707 -19.39573 -18.80711 -18.74708 -17.81298 -17.79855 -17.07399 -16.79381 -16.37842 -16.04503 -15.81687 -15.33084 -15.24682 -15.08502 -14.60700 -14.51323 -14.39087 -14.34249 -14.15482 -13.79508 -13.30141 -13.25885 -13.15609 -13.08894 -12.83309 -12.78602 -12.66762 -12.32126 -11.95781 -11.91761 -11.84211 -11.83151 -11.73042 -11.28138 -10.88202 -10.61803 -10.54443 -10.21175 -9.96811 -9.44606 -8.87666 -7.90071 -5.25741 -0.80015 0.08211 0.96318 1.15365 1.47396 1.50227 1.56713 1.79673 2.00780 2.48555 2.63022 2.68437 2.85245 3.27409 3.44772 3.53437 3.57405 3.66543 3.75867 3.90153 3.92080 3.96283 4.18986 4.25524 4.27121 4.30871 4.43125 4.49534 4.57137 4.60805 4.68702 4.76134 4.82795 4.86488 4.97620 5.07823 5.09555 5.14653 5.21529 5.39213 5.40641 5.44850 5.47394 5.51700 5.57799 5.70113 6.20812 6.48728 7.03581 7.12526 7.14446 7.71138 8.49103 9.23337 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033259 B = 0.001690 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.682827 B =16568.414664 C =17029.906094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.304 5.304 3 N -0.032 5.032 4 N -0.292 5.292 5 C 0.010 3.990 6 C -0.057 4.057 7 C -0.078 4.078 8 C -0.108 4.108 9 C 0.563 3.437 10 O -0.574 6.574 11 N -0.704 5.704 12 C 0.164 3.836 13 C -0.107 4.107 14 H 0.114 0.886 15 C -0.173 4.173 16 H 0.111 0.889 17 C 0.187 3.813 18 N -0.622 5.622 19 C -0.241 4.241 20 H 0.080 0.920 21 C -0.063 4.063 22 N -0.947 5.947 23 Si 0.978 3.022 24 H -0.278 1.278 25 H -0.294 1.294 26 H -0.275 1.275 27 C 0.147 3.853 28 C -0.162 4.162 29 H 0.126 0.874 30 C -0.029 4.029 31 C 0.001 3.999 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.417 0.583 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.004 0.996 42 H 0.249 0.751 43 H 0.055 0.945 44 H 0.029 0.971 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.688 24.026 2.729 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.106 5.106 3 N -0.012 5.012 4 N -0.165 5.165 5 C -0.116 4.116 6 C -0.079 4.079 7 C -0.099 4.099 8 C -0.115 4.115 9 C 0.351 3.649 10 O -0.455 6.455 11 N -0.356 5.356 12 C 0.040 3.960 13 C -0.126 4.126 14 H 0.132 0.868 15 C -0.194 4.194 16 H 0.129 0.871 17 C 0.061 3.939 18 N -0.346 5.346 19 C -0.370 4.370 20 H 0.097 0.903 21 C -0.256 4.256 22 N -0.594 5.594 23 Si 0.806 3.194 24 H -0.204 1.204 25 H -0.220 1.220 26 H -0.201 1.201 27 C 0.022 3.978 28 C -0.182 4.182 29 H 0.143 0.857 30 C -0.052 4.052 31 C -0.118 4.118 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.184 0.816 36 H 0.189 0.811 37 H 0.256 0.744 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.390 25.024 2.655 29.498 hybrid contribution 0.688 -1.964 -0.109 2.084 sum -14.702 23.060 2.547 27.466 Atomic orbital electron populations 1.22792 0.69134 1.07953 1.06947 1.47567 1.10370 1.02133 1.50532 1.77920 0.97088 1.13216 1.13022 1.75328 1.08262 1.12342 1.20551 1.20560 0.94542 0.91118 1.05411 1.20227 0.98190 0.90955 0.98544 1.21168 0.96039 0.95384 0.97335 1.19676 0.94357 0.91958 1.05557 1.18190 0.84461 0.86284 0.75982 1.90783 1.23852 1.79083 1.51751 1.45772 1.09877 1.06256 1.73711 1.20694 0.94395 0.78319 1.02557 1.23042 0.98001 0.91573 1.00015 0.86798 1.23906 0.99700 0.93737 1.02046 0.87138 1.20838 0.87997 0.96856 0.88209 1.45529 1.56405 1.14912 1.17754 1.19335 1.26464 0.97691 0.93501 0.90272 1.25711 1.01726 1.03069 0.95120 1.70079 1.53849 1.36285 0.99225 0.85168 0.78464 0.79265 0.76520 1.20430 1.22029 1.20054 1.21320 0.93000 0.88209 0.95255 1.24570 0.97351 1.04533 0.91707 0.85670 1.20125 1.00904 0.87318 0.96833 1.19724 0.91120 0.91195 1.09777 0.87182 0.86097 0.86324 0.81632 0.81066 0.74448 0.90777 0.90955 0.93144 0.97855 0.94163 0.92687 0.95286 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.41 127.77 1.46 1.77 16 2 N -0.30 -4.68 3.80 -361.27 -1.37 -6.06 16 3 N -0.03 -0.66 13.07 37.02 0.48 -0.18 16 4 N -0.29 -6.85 12.42 -52.39 -0.65 -7.50 16 5 C 0.01 0.21 7.36 39.75 0.29 0.50 16 6 C -0.06 -0.80 10.03 22.19 0.22 -0.58 16 7 C -0.08 -0.91 9.46 22.28 0.21 -0.70 16 8 C -0.11 -1.73 5.88 -20.06 -0.12 -1.85 16 9 C 0.56 11.28 7.77 86.75 0.67 11.95 16 10 O -0.57 -15.64 16.32 -3.96 -0.06 -15.71 16 11 N -0.70 -11.95 5.50 -466.09 -2.57 -14.52 16 12 C 0.16 3.46 5.98 86.38 0.52 3.98 16 13 C -0.11 -2.70 5.54 -9.34 -0.05 -2.75 16 14 H 0.11 2.74 8.04 -2.39 -0.02 2.72 16 15 C -0.17 -5.99 6.71 -9.89 -0.07 -6.06 16 16 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 17 C 0.19 8.81 5.69 86.53 0.49 9.31 16 18 N -0.62 -31.22 3.38 -688.15 -2.33 -33.55 16 19 C -0.24 -13.33 10.35 84.03 0.87 -12.46 16 20 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 21 C -0.06 -3.51 5.40 84.86 0.46 -3.05 16 22 N -0.95 -56.18 10.86 21.65 0.24 -55.95 16 23 Si 0.98 44.97 29.56 68.60 2.03 47.00 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 C 0.15 5.69 7.06 86.54 0.61 6.30 16 28 C -0.16 -4.97 7.00 -8.44 -0.06 -5.03 16 29 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 30 C -0.03 -0.47 9.59 22.58 0.22 -0.25 16 31 C 0.00 0.02 6.94 39.02 0.27 0.29 16 32 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 36 H 0.17 0.92 6.36 -2.91 -0.02 0.90 16 37 H 0.42 4.74 6.40 -92.71 -0.59 4.14 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.60 8.00 -2.39 -0.02 1.58 16 40 H 0.05 2.75 6.51 -2.39 -0.02 2.74 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.15 2.15 7.63 -2.91 -0.02 2.13 16 Total: -1.00 -77.50 378.85 2.21 -75.29 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.44 Total: 9.79 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 6.00 Total: 1.37 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -6.20 Total: -117.75 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.06 Total: -15.71 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.50 2.21 -75.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979014934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.831 kcal (2) G-P(sol) polarization free energy of solvation -77.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds