Wall clock time and date at job start Wed Apr 1 2020 01:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40253 * 126.66253 * 2 1 4 4 N 1.28659 * 109.42435 * 180.02562 * 3 2 1 5 5 C 1.35398 * 110.10508 * 359.97438 * 4 3 2 6 6 C 1.40121 * 133.03139 * 180.02562 * 5 4 3 7 7 C 1.37599 * 120.15186 * 179.97438 * 6 5 4 8 8 C 1.38486 * 120.80483 * 0.05032 * 7 6 5 9 9 C 1.39220 * 120.27206 * 359.95285 * 8 7 6 10 10 C 1.47529 * 120.24364 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99899 * 233.32077 * 10 9 8 12 12 N 1.34776 * 120.00034 * 53.04274 * 10 9 8 13 13 C 1.46491 * 120.00038 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47217 * 180.02562 * 13 12 10 15 15 H 1.08999 * 115.51630 * 29.58199 * 14 13 12 16 16 C 1.53008 * 117.44123 * 244.24570 * 14 13 12 17 17 H 1.08997 * 119.54149 * 4.11009 * 16 14 13 18 18 C 1.57691 * 116.10946 * 161.63954 * 16 14 13 19 19 N 1.48146 * 104.67564 * 87.30575 * 18 16 14 20 20 C 1.36932 * 127.83704 * 139.77309 * 19 18 16 21 21 H 1.07998 * 120.00110 * 198.94462 * 20 19 18 22 22 C 1.38817 * 119.99983 * 18.95160 * 20 19 18 23 23 N 1.31619 * 120.00078 * 7.76089 * 22 20 19 24 24 Si 1.86804 * 119.99865 * 187.76471 * 22 20 19 25 25 H 1.48500 * 109.47167 * 94.96997 * 24 22 20 26 26 H 1.48501 * 109.47180 * 214.97174 * 24 22 20 27 27 H 1.48504 * 109.47258 * 334.97084 * 24 22 20 28 28 C 1.48146 * 104.32225 * 319.77204 * 19 18 16 29 29 C 1.52997 * 117.44176 * 175.00520 * 14 13 12 30 30 H 1.08997 * 119.54165 * 355.87946 * 29 14 13 31 31 C 1.36973 * 126.66608 * 180.28965 * 2 1 3 32 32 H 1.08996 * 109.47471 * 98.44387 * 1 2 3 33 33 H 1.09003 * 109.46847 * 218.44651 * 1 2 3 34 34 H 1.09000 * 109.46805 * 338.44405 * 1 2 3 35 35 H 1.07997 * 119.92073 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.59904 * 180.02562 * 7 6 5 37 37 H 1.07990 * 119.86348 * 179.97438 * 8 7 6 38 38 H 0.97005 * 119.99926 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.47703 * 300.00657 * 13 12 10 40 40 H 1.08999 * 109.47358 * 60.00437 * 13 12 10 41 41 H 1.08996 * 110.92013 * 328.22185 * 18 16 14 42 42 H 1.09005 * 109.93365 * 205.88550 * 18 16 14 43 43 H 0.97004 * 119.99858 * 180.02562 * 23 22 20 44 44 H 1.08998 * 110.40367 * 280.80205 * 28 19 18 45 45 H 1.08997 * 110.40615 * 158.37362 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1251 0.0000 4 7 3.5313 0.7438 -0.0005 5 6 3.5990 -0.6085 -0.0004 6 6 4.6698 -1.5123 -0.0003 7 6 4.4306 -2.8673 0.0004 8 6 3.1359 -3.3589 0.0001 9 6 2.0530 -2.4840 -0.0001 10 6 0.6740 -3.0083 -0.0010 11 8 -0.1174 -2.6361 -0.8458 12 7 0.2931 -3.9042 0.9310 13 6 -1.0763 -4.4245 0.9304 14 6 -1.2455 -5.4166 2.0828 15 1 -0.6206 -5.2322 2.9567 16 6 -1.5381 -6.8743 1.7212 17 1 -1.5502 -7.1761 0.6739 18 6 -1.2672 -7.9380 2.8533 19 7 -2.5273 -7.9879 3.6308 20 6 -3.1493 -9.0906 4.1525 21 1 -4.1927 -9.0428 4.4268 22 6 -2.4386 -10.2699 4.3289 23 7 -1.1361 -10.2878 4.1404 24 14 -3.3309 -11.8315 4.8337 25 1 -3.6608 -12.6263 3.6235 26 1 -2.4584 -12.6326 5.7294 27 1 -4.5827 -11.4769 5.5495 28 6 -2.9616 -6.5741 3.7157 29 6 -2.6454 -5.9849 2.3241 30 1 -3.4822 -5.6244 1.7260 31 6 2.2830 -1.0987 -0.0056 32 1 -0.3634 -0.1509 -1.0165 33 1 -0.3633 -0.8049 0.6390 34 1 -0.3633 0.9558 0.3776 35 1 5.6852 -1.1444 -0.0008 36 1 5.2626 -3.5559 0.0009 37 1 2.9656 -4.4253 0.0002 38 1 0.9255 -4.2040 1.6027 39 1 -1.7784 -3.6001 1.0551 40 1 -1.2729 -4.9291 -0.0156 41 1 -0.4395 -7.6261 3.4903 42 1 -1.0571 -8.9101 2.4072 43 1 -0.6395 -11.1120 4.2633 44 1 -2.3986 -6.0493 4.4875 45 1 -4.0310 -6.5166 3.9187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979119153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:03 Heat of formation + Delta-G solvation = 142.395448 kcal Electronic energy + Delta-G solvation = -28410.265482 eV Core-core repulsion = 24431.820618 eV Total energy + Delta-G solvation = -3978.444863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.49044 -40.05023 -38.76189 -37.68314 -35.23107 -34.81446 -33.46517 -31.55930 -30.77043 -30.65965 -27.98452 -27.32064 -27.07329 -25.25907 -24.45646 -23.04174 -22.48748 -21.22554 -20.69893 -19.88649 -19.36065 -18.44877 -17.81274 -16.90664 -16.81577 -16.51733 -16.17687 -15.95842 -15.36812 -14.95517 -14.62845 -14.47859 -14.06225 -13.80310 -13.70000 -13.40294 -13.16470 -12.93433 -12.81937 -12.75475 -12.56155 -12.34428 -12.15788 -11.93442 -11.46693 -11.33024 -11.18409 -11.01759 -10.90006 -10.75128 -10.35400 -10.24418 -10.16420 -9.85477 -9.57904 -9.32065 -9.21023 -9.13480 -8.72325 -8.70196 -6.91109 -5.88154 -3.23798 -0.10588 0.83435 1.65352 1.75018 2.34898 2.82003 3.16462 3.33165 3.39057 3.40817 3.65806 4.03724 4.10074 4.20881 4.33026 4.39506 4.47289 4.70112 4.76521 4.86438 4.89746 5.13162 5.20332 5.22358 5.27902 5.32878 5.34204 5.41018 5.47317 5.64763 5.72437 5.77547 5.79228 5.82266 5.85710 6.03448 6.07875 6.14790 6.21351 6.44759 6.58132 6.63141 6.82528 7.19493 7.25412 7.44484 7.61799 7.64630 7.84671 8.13922 9.03864 9.66138 10.44302 11.26719 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022563 B = 0.002045 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.687110 B =13688.206528 C =14487.909282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.385 5.385 3 N -0.007 5.007 4 N -0.217 5.217 5 C -0.025 4.025 6 C -0.012 4.012 7 C -0.140 4.140 8 C -0.030 4.030 9 C -0.134 4.134 10 C 0.558 3.442 11 O -0.536 6.536 12 N -0.711 5.711 13 C 0.154 3.846 14 C -0.156 4.156 15 H 0.104 0.896 16 C -0.169 4.169 17 H 0.106 0.894 18 C 0.188 3.812 19 N -0.593 5.593 20 C -0.229 4.229 21 H 0.076 0.924 22 C -0.003 4.003 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.153 3.847 29 C -0.164 4.164 30 H 0.103 0.897 31 C 0.124 3.876 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.406 0.594 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.083 0.917 43 H 0.255 0.745 44 H 0.025 0.975 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.485 17.066 -8.502 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.178 5.178 3 N 0.013 4.987 4 N -0.096 5.096 5 C -0.149 4.149 6 C -0.035 4.035 7 C -0.161 4.161 8 C -0.052 4.052 9 C -0.142 4.142 10 C 0.343 3.657 11 O -0.414 6.414 12 N -0.362 5.362 13 C 0.031 3.969 14 C -0.175 4.175 15 H 0.122 0.878 16 C -0.189 4.189 17 H 0.124 0.876 18 C 0.062 3.938 19 N -0.316 5.316 20 C -0.357 4.357 21 H 0.093 0.907 22 C -0.201 4.201 23 N -0.560 5.560 24 Si 0.743 3.257 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.204 1.204 28 C 0.027 3.973 29 C -0.185 4.185 30 H 0.121 0.879 31 C 0.000 4.000 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.241 0.759 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.828 18.618 -8.981 22.477 hybrid contribution -0.405 -1.969 0.475 2.066 sum 8.424 16.648 -8.505 20.505 Atomic orbital electron populations 1.22166 0.71943 1.04626 1.05085 1.50081 1.08270 1.03162 1.56301 1.81665 0.94006 1.07569 1.15425 1.74865 1.11426 1.10204 1.13080 1.19905 0.92918 0.90314 1.11797 1.20647 0.97678 0.91401 0.93731 1.20969 0.97105 0.94785 1.03207 1.21395 0.91143 0.99810 0.92830 1.18831 0.94584 0.89462 1.11279 1.18069 0.86736 0.79282 0.81574 1.90818 1.53723 1.59460 1.37395 1.46064 1.14626 1.43525 1.31956 1.20947 0.81606 0.96115 0.98271 1.22547 1.00656 0.95219 0.99066 0.87838 1.25103 1.02754 0.90627 1.00400 0.87600 1.21606 0.88155 0.95809 0.88211 1.45123 1.25502 1.00221 1.60804 1.18994 0.93013 0.88047 1.35686 0.90654 1.24966 0.95422 0.98911 1.00793 1.69896 1.05240 1.26589 1.54292 0.86090 0.78569 0.82989 0.78040 1.21465 1.21600 1.20421 1.21170 0.97914 0.86796 0.91441 1.23795 0.90459 1.03361 1.00841 0.87931 1.18958 0.91145 0.89100 1.00758 0.88911 0.89386 0.88553 0.83852 0.83588 0.83529 0.75877 0.91176 0.91012 0.95442 0.89897 0.93510 0.95763 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 9.85 59.85 0.59 1.52 16 2 N -0.39 -4.49 4.10 -65.27 -0.27 -4.76 16 3 N -0.01 -0.08 13.72 60.35 0.83 0.74 16 4 N -0.22 -2.76 12.40 32.15 0.40 -2.36 16 5 C -0.03 -0.28 7.26 -84.76 -0.62 -0.89 16 6 C -0.01 -0.09 10.09 -39.11 -0.39 -0.49 16 7 C -0.14 -0.84 9.98 -39.72 -0.40 -1.24 16 8 C -0.03 -0.22 9.67 -39.13 -0.38 -0.59 16 9 C -0.13 -1.35 5.66 -104.92 -0.59 -1.94 16 10 C 0.56 6.27 5.98 -12.47 -0.07 6.20 16 11 O -0.54 -7.49 14.72 5.28 0.08 -7.41 16 12 N -0.71 -7.12 5.52 -61.35 -0.34 -7.46 16 13 C 0.15 1.77 5.95 -4.04 -0.02 1.74 16 14 C -0.16 -2.12 5.34 -90.62 -0.48 -2.60 16 15 H 0.10 1.41 8.04 -51.93 -0.42 1.00 16 16 C -0.17 -2.90 7.03 -87.37 -0.61 -3.51 16 17 H 0.11 1.72 8.12 -51.93 -0.42 1.30 16 18 C 0.19 4.24 5.70 -0.57 0.00 4.24 16 19 N -0.59 -14.60 3.37 -166.73 -0.56 -15.16 16 20 C -0.23 -6.21 10.34 -15.06 -0.16 -6.36 16 21 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 22 C 0.00 -0.09 5.40 -17.43 -0.09 -0.19 16 23 N -0.91 -25.94 11.00 55.49 0.61 -25.33 16 24 Si 0.91 21.37 29.56 -169.99 -5.02 16.35 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.15 3.04 7.04 -2.41 -0.02 3.02 16 29 C -0.16 -2.67 6.77 -89.22 -0.60 -3.28 16 30 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 31 C 0.12 1.43 6.84 -83.92 -0.57 0.85 16 32 H 0.09 0.87 7.76 -51.93 -0.40 0.46 16 33 H 0.09 0.81 6.57 -51.93 -0.34 0.47 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.15 0.45 8.06 -52.48 -0.42 0.03 16 37 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.41 3.36 8.32 -40.82 -0.34 3.02 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 2.11 6.71 -51.93 -0.35 1.77 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -32.93 377.25 -9.06 -41.99 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.04 Total: 1.24 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -4.43 Total: -3.52 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.67 Total: -54.33 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.08 Total: -7.41 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.93 -9.06 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979119153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.383 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds