Wall clock time and date at job start Wed Apr 1 2020 01:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40253 * 126.66253 * 2 1 4 4 N 1.28659 * 109.42435 * 180.02562 * 3 2 1 5 5 C 1.35398 * 110.10508 * 359.97438 * 4 3 2 6 6 C 1.40121 * 133.03139 * 180.02562 * 5 4 3 7 7 C 1.37599 * 120.15186 * 179.97438 * 6 5 4 8 8 C 1.38486 * 120.80483 * 0.05032 * 7 6 5 9 9 C 1.39220 * 120.27206 * 359.95285 * 8 7 6 10 10 C 1.47529 * 120.24364 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99899 * 233.32077 * 10 9 8 12 12 N 1.34776 * 120.00034 * 53.04274 * 10 9 8 13 13 C 1.46491 * 120.00038 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47217 * 180.02562 * 13 12 10 15 15 H 1.08999 * 115.51630 * 29.58199 * 14 13 12 16 16 C 1.53008 * 117.44123 * 244.24570 * 14 13 12 17 17 H 1.08997 * 119.54149 * 4.11009 * 16 14 13 18 18 C 1.57691 * 116.10946 * 161.63954 * 16 14 13 19 19 N 1.48146 * 104.67564 * 87.30575 * 18 16 14 20 20 C 1.36932 * 127.83704 * 139.77309 * 19 18 16 21 21 H 1.07998 * 120.00110 * 198.94462 * 20 19 18 22 22 C 1.38817 * 119.99983 * 18.95160 * 20 19 18 23 23 N 1.31619 * 120.00078 * 7.76089 * 22 20 19 24 24 Si 1.86804 * 119.99865 * 187.76471 * 22 20 19 25 25 H 1.48500 * 109.47167 * 94.96997 * 24 22 20 26 26 H 1.48501 * 109.47180 * 214.97174 * 24 22 20 27 27 H 1.48504 * 109.47258 * 334.97084 * 24 22 20 28 28 C 1.48146 * 104.32225 * 319.77204 * 19 18 16 29 29 C 1.52997 * 117.44176 * 175.00520 * 14 13 12 30 30 H 1.08997 * 119.54165 * 355.87946 * 29 14 13 31 31 C 1.36973 * 126.66608 * 180.28965 * 2 1 3 32 32 H 1.08996 * 109.47471 * 98.44387 * 1 2 3 33 33 H 1.09003 * 109.46847 * 218.44651 * 1 2 3 34 34 H 1.09000 * 109.46805 * 338.44405 * 1 2 3 35 35 H 1.07997 * 119.92073 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.59904 * 180.02562 * 7 6 5 37 37 H 1.07990 * 119.86348 * 179.97438 * 8 7 6 38 38 H 0.97005 * 119.99926 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.47703 * 300.00657 * 13 12 10 40 40 H 1.08999 * 109.47358 * 60.00437 * 13 12 10 41 41 H 1.08996 * 110.92013 * 328.22185 * 18 16 14 42 42 H 1.09005 * 109.93365 * 205.88550 * 18 16 14 43 43 H 0.97004 * 119.99858 * 180.02562 * 23 22 20 44 44 H 1.08998 * 110.40367 * 280.80205 * 28 19 18 45 45 H 1.08997 * 110.40615 * 158.37362 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1251 0.0000 4 7 3.5313 0.7438 -0.0005 5 6 3.5990 -0.6085 -0.0004 6 6 4.6698 -1.5123 -0.0003 7 6 4.4306 -2.8673 0.0004 8 6 3.1359 -3.3589 0.0001 9 6 2.0530 -2.4840 -0.0001 10 6 0.6740 -3.0083 -0.0010 11 8 -0.1174 -2.6361 -0.8458 12 7 0.2931 -3.9042 0.9310 13 6 -1.0763 -4.4245 0.9304 14 6 -1.2455 -5.4166 2.0828 15 1 -0.6206 -5.2322 2.9567 16 6 -1.5381 -6.8743 1.7212 17 1 -1.5502 -7.1761 0.6739 18 6 -1.2672 -7.9380 2.8533 19 7 -2.5273 -7.9879 3.6308 20 6 -3.1493 -9.0906 4.1525 21 1 -4.1927 -9.0428 4.4268 22 6 -2.4386 -10.2699 4.3289 23 7 -1.1361 -10.2878 4.1404 24 14 -3.3309 -11.8315 4.8337 25 1 -3.6608 -12.6263 3.6235 26 1 -2.4584 -12.6326 5.7294 27 1 -4.5827 -11.4769 5.5495 28 6 -2.9616 -6.5741 3.7157 29 6 -2.6454 -5.9849 2.3241 30 1 -3.4822 -5.6244 1.7260 31 6 2.2830 -1.0987 -0.0056 32 1 -0.3634 -0.1509 -1.0165 33 1 -0.3633 -0.8049 0.6390 34 1 -0.3633 0.9558 0.3776 35 1 5.6852 -1.1444 -0.0008 36 1 5.2626 -3.5559 0.0009 37 1 2.9656 -4.4253 0.0002 38 1 0.9255 -4.2040 1.6027 39 1 -1.7784 -3.6001 1.0551 40 1 -1.2729 -4.9291 -0.0156 41 1 -0.4395 -7.6261 3.4903 42 1 -1.0571 -8.9101 2.4072 43 1 -0.6395 -11.1120 4.2633 44 1 -2.3986 -6.0493 4.4875 45 1 -4.0310 -6.5166 3.9187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979119153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:02 Heat of formation + Delta-G solvation = 120.389862 kcal Electronic energy + Delta-G solvation = -28411.219715 eV Core-core repulsion = 24431.820618 eV Total energy + Delta-G solvation = -3979.399097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.24825 -40.98609 -40.12459 -38.36395 -36.40052 -35.64158 -35.01476 -32.85419 -31.95512 -31.36960 -29.00562 -28.72174 -28.39375 -26.74173 -25.33034 -23.74005 -23.43322 -22.68913 -21.83563 -20.99677 -20.75405 -19.22217 -18.81164 -18.55314 -17.62823 -17.32212 -17.11433 -16.78724 -16.68860 -16.11005 -15.90759 -15.46573 -15.14401 -15.08687 -14.60668 -14.54212 -14.45971 -14.24156 -13.96276 -13.49765 -13.38236 -13.19609 -13.14510 -13.02511 -12.90918 -12.81819 -12.74840 -12.30025 -12.26174 -11.91081 -11.89841 -11.78123 -11.74652 -11.18846 -10.92613 -10.66707 -10.57571 -10.12099 -10.02924 -9.40348 -8.86494 -7.93130 -5.30126 -0.79516 0.15850 0.88146 1.02326 1.46903 1.47755 1.52907 1.57114 1.96847 2.47617 2.51258 2.76825 2.96246 3.26066 3.39860 3.47653 3.61223 3.67082 3.73898 3.82250 3.87815 4.13134 4.17240 4.20323 4.28785 4.29889 4.43512 4.47957 4.50654 4.61135 4.65689 4.71837 4.74814 4.82852 4.94495 5.04002 5.15349 5.18391 5.24642 5.36421 5.40667 5.41397 5.45201 5.55557 5.63087 5.66623 6.19539 6.39730 6.80463 7.02271 7.03330 7.68324 8.47884 9.21020 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022563 B = 0.002045 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.687110 B =13688.206528 C =14487.909282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.390 5.390 3 N -0.035 5.035 4 N -0.236 5.236 5 C -0.046 4.046 6 C -0.012 4.012 7 C -0.125 4.125 8 C -0.014 4.014 9 C -0.156 4.156 10 C 0.563 3.437 11 O -0.567 6.567 12 N -0.702 5.702 13 C 0.163 3.837 14 C -0.113 4.113 15 H 0.108 0.892 16 C -0.175 4.175 17 H 0.118 0.882 18 C 0.191 3.809 19 N -0.621 5.621 20 C -0.242 4.242 21 H 0.077 0.923 22 C -0.059 4.059 23 N -0.944 5.944 24 Si 0.977 3.023 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.268 1.268 28 C 0.147 3.853 29 C -0.160 4.160 30 H 0.126 0.874 31 C 0.106 3.894 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.168 0.832 36 H 0.186 0.814 37 H 0.172 0.828 38 H 0.416 0.584 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.009 0.991 42 H 0.044 0.956 43 H 0.250 0.750 44 H 0.025 0.975 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.139 17.113 -8.952 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.184 5.184 3 N -0.014 5.014 4 N -0.114 5.114 5 C -0.171 4.171 6 C -0.034 4.034 7 C -0.146 4.146 8 C -0.036 4.036 9 C -0.163 4.163 10 C 0.350 3.650 11 O -0.447 6.447 12 N -0.353 5.353 13 C 0.040 3.960 14 C -0.132 4.132 15 H 0.126 0.874 16 C -0.195 4.195 17 H 0.136 0.864 18 C 0.066 3.934 19 N -0.345 5.345 20 C -0.371 4.371 21 H 0.095 0.905 22 C -0.254 4.254 23 N -0.592 5.592 24 Si 0.805 3.195 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.192 1.192 28 C 0.022 3.978 29 C -0.180 4.180 30 H 0.143 0.857 31 C -0.018 4.018 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.186 0.814 36 H 0.204 0.796 37 H 0.189 0.811 38 H 0.253 0.747 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.478 18.704 -9.420 22.987 hybrid contribution -0.546 -2.015 0.636 2.182 sum 8.931 16.689 -8.784 20.868 Atomic orbital electron populations 1.22240 0.71117 1.05628 1.04786 1.50252 1.08849 1.03151 1.56182 1.81582 0.94365 1.08320 1.17157 1.74786 1.11619 1.11434 1.13538 1.20397 0.93965 0.90064 1.12637 1.21090 0.98007 0.91641 0.92613 1.21430 0.97695 0.94628 1.00835 1.21828 0.90929 1.00665 0.90173 1.18839 0.94647 0.89181 1.13678 1.18192 0.86985 0.78821 0.81008 1.90804 1.54721 1.60482 1.38662 1.45921 1.14249 1.43179 1.31982 1.20774 0.82667 0.95677 0.96910 1.22435 0.98351 0.92845 0.99532 0.87372 1.24766 1.04680 0.90884 0.99157 0.86366 1.21370 0.87190 0.95663 0.89214 1.45442 1.26012 1.01626 1.61402 1.19341 0.93371 0.89262 1.35121 0.90533 1.25762 0.96193 1.01832 1.01563 1.70074 1.06518 1.26885 1.55675 0.85086 0.77701 0.79181 0.77499 1.21339 1.21946 1.19228 1.21314 0.98109 0.84688 0.93686 1.23707 0.92215 1.03535 0.98582 0.85658 1.19303 0.91448 0.89661 1.01369 0.89492 0.89521 0.86681 0.81409 0.79645 0.81075 0.74662 0.90208 0.91190 0.97305 0.93706 0.94051 0.95675 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.86 9.85 127.77 1.26 3.12 16 2 N -0.39 -9.14 4.10 -360.42 -1.48 -10.62 16 3 N -0.03 -0.91 13.72 37.02 0.51 -0.40 16 4 N -0.24 -6.03 12.40 -52.19 -0.65 -6.67 16 5 C -0.05 -0.97 7.26 39.59 0.29 -0.68 16 6 C -0.01 -0.14 10.09 22.58 0.23 0.08 16 7 C -0.13 -1.00 9.98 22.18 0.22 -0.78 16 8 C -0.01 -0.16 9.67 22.56 0.22 0.06 16 9 C -0.16 -2.84 5.66 -20.06 -0.11 -2.95 16 10 C 0.56 11.60 5.98 86.69 0.52 12.11 16 11 O -0.57 -15.13 14.72 -4.01 -0.06 -15.19 16 12 N -0.70 -12.17 5.52 -466.29 -2.58 -14.75 16 13 C 0.16 3.26 5.95 86.38 0.51 3.77 16 14 C -0.11 -2.77 5.34 -10.79 -0.06 -2.82 16 15 H 0.11 2.65 8.04 -2.39 -0.02 2.63 16 16 C -0.18 -5.76 7.03 -8.69 -0.06 -5.82 16 17 H 0.12 3.63 8.12 -2.39 -0.02 3.61 16 18 C 0.19 8.78 5.70 87.72 0.50 9.28 16 19 N -0.62 -30.85 3.37 -681.42 -2.30 -33.15 16 20 C -0.24 -13.26 10.34 84.04 0.87 -12.39 16 21 H 0.08 4.05 7.84 -2.91 -0.02 4.02 16 22 C -0.06 -3.29 5.40 84.86 0.46 -2.83 16 23 N -0.94 -55.04 11.00 21.65 0.24 -54.80 16 24 Si 0.98 44.42 29.56 68.60 2.03 46.45 16 25 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 C 0.15 5.72 7.04 86.54 0.61 6.33 16 29 C -0.16 -4.87 6.77 -9.88 -0.07 -4.93 16 30 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 31 C 0.11 2.36 6.84 39.41 0.27 2.63 16 32 H 0.09 1.65 7.76 -2.39 -0.02 1.63 16 33 H 0.09 1.56 6.57 -2.39 -0.02 1.55 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.19 0.07 8.06 -2.91 -0.02 0.05 16 37 H 0.17 1.05 8.06 -2.92 -0.02 1.02 16 38 H 0.42 5.60 8.32 -92.70 -0.77 4.83 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.51 7.94 -2.39 -0.02 1.50 16 41 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 42 H 0.04 2.37 6.71 -2.38 -0.02 2.35 16 43 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -74.75 377.25 1.63 -73.12 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.26 Total: 11.84 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 5.65 Total: 4.17 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -6.25 Total: -120.38 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.06 Total: -15.19 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -74.75 1.63 -73.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979119153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.512 kcal (2) G-P(sol) polarization free energy of solvation -74.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds