Wall clock time and date at job start Wed Apr 1 2020 01:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40224 * 126.66119 * 2 1 4 4 N 1.28639 * 109.51020 * 180.02562 * 3 2 1 5 5 C 1.35424 * 110.13324 * 0.02562 * 4 3 2 6 6 C 1.39794 * 133.05169 * 180.29766 * 5 4 3 7 7 C 1.38882 * 119.56428 * 180.19942 * 6 5 4 8 8 C 1.47712 * 119.86125 * 179.75187 * 7 6 5 9 9 O 1.21562 * 120.00374 * 359.72115 * 8 7 6 10 10 N 1.34779 * 119.99589 * 179.72105 * 8 7 6 11 11 C 1.46498 * 119.99823 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47252 * 180.02562 * 11 10 8 13 13 C 1.29451 * 117.69445 * 94.99944 * 12 11 10 14 14 C 1.50330 * 123.65007 * 181.14193 * 13 12 11 15 15 N 1.47132 * 109.10280 * 348.53955 * 14 13 12 16 16 C 1.36936 * 121.53492 * 223.15848 * 15 14 13 17 17 H 1.07997 * 120.00400 * 156.23953 * 16 15 14 18 18 C 1.38816 * 119.99772 * 336.23726 * 16 15 14 19 19 N 1.31620 * 119.99998 * 344.47294 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 164.47294 * 18 16 15 21 21 H 1.48498 * 109.47091 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47086 * 119.99888 * 20 18 16 23 23 H 1.48500 * 109.46988 * 240.00040 * 20 18 16 24 24 C 1.47334 * 117.08742 * 43.37930 * 15 14 13 25 25 C 1.49968 * 117.69162 * 275.02088 * 12 11 10 26 26 C 1.40256 * 120.27075 * 359.47042 * 7 6 5 27 27 C 1.36265 * 120.45225 * 0.25393 * 26 7 6 28 28 C 1.37267 * 126.65395 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46772 * 269.99631 * 1 2 3 30 30 H 1.08996 * 109.47158 * 29.99271 * 1 2 3 31 31 H 1.09000 * 109.47644 * 149.99898 * 1 2 3 32 32 H 1.07999 * 120.21630 * 359.94148 * 6 5 4 33 33 H 0.97004 * 120.00195 * 359.97438 * 10 8 7 34 34 H 1.08995 * 109.47380 * 60.00218 * 11 10 8 35 35 H 1.08996 * 109.47181 * 299.99959 * 11 10 8 36 36 H 1.07993 * 118.17889 * 0.85731 * 13 12 11 37 37 H 1.08999 * 109.52397 * 108.64692 * 14 13 12 38 38 H 1.09002 * 109.52075 * 228.83522 * 14 13 12 39 39 H 0.97003 * 119.99843 * 179.97438 * 19 18 16 40 40 H 1.09008 * 109.77605 * 178.39713 * 24 15 14 41 41 H 1.09005 * 109.78096 * 57.59157 * 24 15 14 42 42 H 1.08993 * 109.31804 * 281.28826 * 25 12 11 43 43 H 1.09003 * 109.31610 * 40.71757 * 25 12 11 44 44 H 1.07997 * 119.77227 * 180.28111 * 26 7 6 45 45 H 1.08003 * 119.92023 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1249 0.0000 4 7 3.5314 0.7455 -0.0005 5 6 3.6019 -0.6069 -0.0015 6 6 4.6717 -1.5068 0.0029 7 6 4.4185 -2.8723 -0.0038 8 6 5.5439 -3.8290 -0.0047 9 8 6.6889 -3.4206 -0.0047 10 7 5.3013 -5.1548 -0.0056 11 6 6.4175 -6.1036 -0.0071 12 6 5.8800 -7.5115 -0.0085 13 6 5.7583 -8.1079 -1.1510 14 6 5.2146 -9.5004 -1.3100 15 7 5.1213 -10.1350 0.0141 16 6 5.5115 -11.4320 0.2157 17 1 5.8008 -11.7617 1.2026 18 6 5.5352 -12.3231 -0.8484 19 7 4.9067 -12.0293 -1.9669 20 14 6.4590 -13.9392 -0.6929 21 1 7.0765 -14.0287 0.6546 22 1 5.5143 -15.0695 -0.8811 23 1 7.5210 -14.0039 -1.7288 24 6 4.5845 -9.3155 1.1145 25 6 5.5233 -8.1227 1.3137 26 6 3.0986 -3.3466 -0.0039 27 6 2.0514 -2.4748 -0.0025 28 6 2.2844 -1.1012 -0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 5.6883 -1.1425 0.0074 33 1 4.3877 -5.4807 -0.0053 34 1 7.0277 -5.9482 0.8826 35 1 7.0265 -5.9468 -0.8973 36 1 6.0601 -7.5738 -2.0398 37 1 4.2259 -9.4554 -1.7667 38 1 5.8835 -10.0824 -1.9440 39 1 4.9235 -12.6518 -2.7106 40 1 4.5416 -9.9079 2.0286 41 1 3.5865 -8.9605 0.8572 42 1 6.4323 -8.4587 1.8126 43 1 5.0298 -7.3752 1.9350 44 1 2.9109 -4.4102 -0.0046 45 1 1.0384 -2.8494 -0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000843753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:49 Heat of formation + Delta-G solvation = 122.764318 kcal Electronic energy + Delta-G solvation = -28071.406886 eV Core-core repulsion = 24092.110753 eV Total energy + Delta-G solvation = -3979.296133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.50102 -40.04499 -37.99576 -37.33606 -35.20671 -35.01647 -33.02526 -31.31316 -31.14251 -30.54366 -29.74583 -28.04552 -27.09511 -24.96686 -23.88973 -23.53773 -22.76345 -21.62560 -21.19097 -20.87561 -18.72144 -17.85548 -17.68002 -17.00405 -16.57593 -16.22554 -15.73532 -15.35196 -15.14182 -14.95795 -14.67096 -14.34158 -14.04476 -13.88182 -13.68383 -13.67502 -13.46842 -13.28416 -13.06140 -12.74793 -12.43769 -12.27543 -12.12939 -12.06485 -11.61778 -11.41965 -11.20712 -11.13076 -10.96385 -10.79238 -10.46952 -10.33452 -10.13025 -9.87930 -9.65074 -9.38662 -9.08166 -8.75738 -8.73754 -8.12840 -6.80948 -5.85236 -3.23910 0.02624 0.46240 1.59976 1.74784 2.49178 2.57554 3.30310 3.34567 3.42663 3.44338 3.44476 3.66340 3.89905 4.13689 4.39396 4.45016 4.46888 4.53095 4.66471 4.73242 4.83919 4.95487 5.12467 5.30070 5.34870 5.39486 5.49987 5.51902 5.69494 5.75195 5.77650 5.90055 5.99215 6.01328 6.10898 6.13645 6.27386 6.37039 6.46504 6.67232 6.80468 7.09922 7.19652 7.25864 7.47308 7.54057 7.67597 7.76882 8.11882 8.32260 9.13835 9.76526 10.34304 11.25264 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.001943 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.904350 B =14409.386484 C =15042.380802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.398 5.398 3 N -0.008 5.008 4 N -0.207 5.207 5 C -0.029 4.029 6 C 0.035 3.965 7 C -0.148 4.148 8 C 0.559 3.441 9 O -0.539 6.539 10 N -0.714 5.714 11 C 0.157 3.843 12 C -0.168 4.168 13 C -0.122 4.122 14 C 0.193 3.807 15 N -0.595 5.595 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.002 4.002 19 N -0.910 5.910 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.143 3.857 25 C -0.090 4.090 26 C -0.038 4.038 27 C -0.126 4.126 28 C 0.105 3.895 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.401 0.599 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.057 0.943 41 H 0.022 0.978 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.144 0.856 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 21.071 3.494 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.192 5.192 3 N 0.012 4.988 4 N -0.087 5.087 5 C -0.152 4.152 6 C 0.012 3.988 7 C -0.154 4.154 8 C 0.346 3.654 9 O -0.417 6.417 10 N -0.365 5.365 11 C 0.035 3.965 12 C -0.169 4.169 13 C -0.143 4.143 14 C 0.068 3.932 15 N -0.318 5.318 16 C -0.374 4.374 17 H 0.087 0.913 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.017 3.983 25 C -0.130 4.130 26 C -0.060 4.060 27 C -0.148 4.148 28 C -0.018 4.018 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.172 0.828 33 H 0.236 0.764 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.059 0.941 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.162 0.838 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.249 22.775 3.366 24.811 hybrid contribution -0.315 -1.970 -0.100 1.998 sum -9.564 20.805 3.266 23.130 Atomic orbital electron populations 1.22052 0.72553 1.05418 1.04305 1.50138 1.07982 1.03482 1.57621 1.81651 0.94031 1.07562 1.15601 1.74875 1.11208 1.10406 1.12165 1.19795 0.93072 0.90202 1.12148 1.20577 0.98525 0.89917 0.89779 1.19741 0.93674 0.93359 1.08667 1.17996 0.88212 0.82366 0.76852 1.90793 1.22168 1.78623 1.50143 1.46095 1.10956 1.05126 1.74323 1.20503 0.87875 0.85954 1.02165 1.20490 1.06095 0.94025 0.96246 1.23307 0.95482 0.99377 0.96147 1.19796 0.98699 0.86461 0.88277 1.44172 1.73197 1.09905 1.04554 1.19223 1.37325 0.85323 0.95553 0.91258 1.24992 0.99739 0.97850 0.97396 1.70010 1.43655 1.36882 1.04960 0.86181 0.79394 0.83389 0.77576 1.20285 1.21757 1.21567 1.20959 0.93511 0.91318 0.92537 1.20761 1.00631 0.97972 0.93590 1.20986 0.90814 1.00292 0.93879 1.19710 1.00677 0.87927 1.06503 1.19507 0.90925 0.90630 1.00688 0.89772 0.88342 0.88772 0.82830 0.76383 0.91288 0.91371 0.88693 0.94052 0.88800 0.93632 0.92445 0.95970 0.91682 0.92846 0.83817 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.32 11.52 59.85 0.69 1.01 16 2 N -0.40 -3.35 4.11 -65.43 -0.27 -3.62 16 3 N -0.01 -0.09 13.72 60.35 0.83 0.74 16 4 N -0.21 -2.60 12.40 32.15 0.40 -2.20 16 5 C -0.03 -0.32 7.26 -84.76 -0.62 -0.94 16 6 C 0.04 0.39 9.64 -38.76 -0.37 0.01 16 7 C -0.15 -1.53 5.87 -105.03 -0.62 -2.14 16 8 C 0.56 7.13 7.76 -12.39 -0.10 7.04 16 9 O -0.54 -8.79 16.31 5.31 0.09 -8.70 16 10 N -0.71 -8.38 5.50 -62.48 -0.34 -8.72 16 11 C 0.16 2.18 5.66 -5.19 -0.03 2.15 16 12 C -0.17 -2.65 5.22 -100.99 -0.53 -3.18 16 13 C -0.12 -2.17 9.47 -35.78 -0.34 -2.51 16 14 C 0.19 4.32 5.25 -5.03 -0.03 4.29 16 15 N -0.60 -14.17 3.01 -173.56 -0.52 -14.69 16 16 C -0.24 -6.49 9.71 -15.06 -0.15 -6.63 16 17 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 18 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 19 N -0.91 -25.44 11.07 55.49 0.61 -24.82 16 20 Si 0.90 21.24 29.58 -169.99 -5.03 16.21 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.14 2.76 6.57 -3.53 -0.02 2.74 16 25 C -0.09 -1.46 5.95 -28.18 -0.17 -1.62 16 26 C -0.04 -0.28 9.46 -39.53 -0.37 -0.66 16 27 C -0.13 -0.87 9.97 -39.89 -0.40 -1.27 16 28 C 0.10 0.97 6.93 -84.10 -0.58 0.38 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.15 1.71 7.62 -52.49 -0.40 1.31 16 33 H 0.40 3.85 6.46 -40.82 -0.26 3.59 16 34 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.07 0.98 7.78 -51.93 -0.40 0.58 16 36 H 0.10 1.51 7.73 -52.49 -0.41 1.11 16 37 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 2.38 6.39 -51.93 -0.33 2.05 16 39 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.06 1.09 7.96 -51.92 -0.41 0.67 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.14 0.77 6.36 -52.49 -0.33 0.44 16 45 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -33.24 377.94 -8.16 -41.40 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.90 Total: 0.20 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -3.71 Total: -1.48 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.71 Total: -53.33 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.24 -8.16 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000843753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.167 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds