Wall clock time and date at job start Wed Apr 1 2020 01:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40224 * 126.66119 * 2 1 4 4 N 1.28639 * 109.51020 * 180.02562 * 3 2 1 5 5 C 1.35424 * 110.13324 * 0.02562 * 4 3 2 6 6 C 1.39794 * 133.05169 * 180.29766 * 5 4 3 7 7 C 1.38882 * 119.56428 * 180.19942 * 6 5 4 8 8 C 1.47712 * 119.86125 * 179.75187 * 7 6 5 9 9 O 1.21562 * 120.00374 * 359.72115 * 8 7 6 10 10 N 1.34779 * 119.99589 * 179.72105 * 8 7 6 11 11 C 1.46498 * 119.99823 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47252 * 180.02562 * 11 10 8 13 13 C 1.29451 * 117.69445 * 94.99944 * 12 11 10 14 14 C 1.50330 * 123.65007 * 181.14193 * 13 12 11 15 15 N 1.47132 * 109.10280 * 348.53955 * 14 13 12 16 16 C 1.36936 * 121.53492 * 223.15848 * 15 14 13 17 17 H 1.07997 * 120.00400 * 156.23953 * 16 15 14 18 18 C 1.38816 * 119.99772 * 336.23726 * 16 15 14 19 19 N 1.31620 * 119.99998 * 344.47294 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 164.47294 * 18 16 15 21 21 H 1.48498 * 109.47091 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47086 * 119.99888 * 20 18 16 23 23 H 1.48500 * 109.46988 * 240.00040 * 20 18 16 24 24 C 1.47334 * 117.08742 * 43.37930 * 15 14 13 25 25 C 1.49968 * 117.69162 * 275.02088 * 12 11 10 26 26 C 1.40256 * 120.27075 * 359.47042 * 7 6 5 27 27 C 1.36265 * 120.45225 * 0.25393 * 26 7 6 28 28 C 1.37267 * 126.65395 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46772 * 269.99631 * 1 2 3 30 30 H 1.08996 * 109.47158 * 29.99271 * 1 2 3 31 31 H 1.09000 * 109.47644 * 149.99898 * 1 2 3 32 32 H 1.07999 * 120.21630 * 359.94148 * 6 5 4 33 33 H 0.97004 * 120.00195 * 359.97438 * 10 8 7 34 34 H 1.08995 * 109.47380 * 60.00218 * 11 10 8 35 35 H 1.08996 * 109.47181 * 299.99959 * 11 10 8 36 36 H 1.07993 * 118.17889 * 0.85731 * 13 12 11 37 37 H 1.08999 * 109.52397 * 108.64692 * 14 13 12 38 38 H 1.09002 * 109.52075 * 228.83522 * 14 13 12 39 39 H 0.97003 * 119.99843 * 179.97438 * 19 18 16 40 40 H 1.09008 * 109.77605 * 178.39713 * 24 15 14 41 41 H 1.09005 * 109.78096 * 57.59157 * 24 15 14 42 42 H 1.08993 * 109.31804 * 281.28826 * 25 12 11 43 43 H 1.09003 * 109.31610 * 40.71757 * 25 12 11 44 44 H 1.07997 * 119.77227 * 180.28111 * 26 7 6 45 45 H 1.08003 * 119.92023 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1249 0.0000 4 7 3.5314 0.7455 -0.0005 5 6 3.6019 -0.6069 -0.0015 6 6 4.6717 -1.5068 0.0029 7 6 4.4185 -2.8723 -0.0038 8 6 5.5439 -3.8290 -0.0047 9 8 6.6889 -3.4206 -0.0047 10 7 5.3013 -5.1548 -0.0056 11 6 6.4175 -6.1036 -0.0071 12 6 5.8800 -7.5115 -0.0085 13 6 5.7583 -8.1079 -1.1510 14 6 5.2146 -9.5004 -1.3100 15 7 5.1213 -10.1350 0.0141 16 6 5.5115 -11.4320 0.2157 17 1 5.8008 -11.7617 1.2026 18 6 5.5352 -12.3231 -0.8484 19 7 4.9067 -12.0293 -1.9669 20 14 6.4590 -13.9392 -0.6929 21 1 7.0765 -14.0287 0.6546 22 1 5.5143 -15.0695 -0.8811 23 1 7.5210 -14.0039 -1.7288 24 6 4.5845 -9.3155 1.1145 25 6 5.5233 -8.1227 1.3137 26 6 3.0986 -3.3466 -0.0039 27 6 2.0514 -2.4748 -0.0025 28 6 2.2844 -1.1012 -0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 5.6883 -1.1425 0.0074 33 1 4.3877 -5.4807 -0.0053 34 1 7.0277 -5.9482 0.8826 35 1 7.0265 -5.9468 -0.8973 36 1 6.0601 -7.5738 -2.0398 37 1 4.2259 -9.4554 -1.7667 38 1 5.8835 -10.0824 -1.9440 39 1 4.9235 -12.6518 -2.7106 40 1 4.5416 -9.9079 2.0286 41 1 3.5865 -8.9605 0.8572 42 1 6.4323 -8.4587 1.8126 43 1 5.0298 -7.3752 1.9350 44 1 2.9109 -4.4102 -0.0046 45 1 1.0384 -2.8494 -0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000843753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:48 Heat of formation + Delta-G solvation = 100.493687 kcal Electronic energy + Delta-G solvation = -28072.372613 eV Core-core repulsion = 24092.110753 eV Total energy + Delta-G solvation = -3980.261860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.20849 -41.04634 -39.37890 -38.20812 -36.44098 -35.76209 -34.57439 -32.74803 -31.83171 -31.58329 -31.26862 -28.69116 -28.37520 -26.32046 -24.94804 -24.42861 -24.21489 -22.78054 -22.25068 -21.81894 -19.69314 -19.33914 -18.46273 -17.91597 -17.34099 -17.21682 -17.05980 -16.92733 -16.26504 -16.00271 -15.71529 -15.37187 -15.26243 -15.15723 -14.90767 -14.52185 -14.35079 -14.16325 -13.92325 -13.84636 -13.61711 -13.49124 -13.22958 -13.07993 -12.85507 -12.78922 -12.74451 -12.58369 -12.17567 -12.06511 -11.89798 -11.73171 -11.66771 -11.29106 -11.14034 -10.67061 -10.22340 -10.00822 -9.61846 -9.43713 -8.71872 -7.86467 -5.26531 -0.68816 -0.26860 1.04097 1.07112 1.20351 1.47303 1.50241 1.59394 1.70496 2.28061 2.52860 2.64465 2.95826 3.31004 3.35257 3.48935 3.66166 3.68063 3.82744 3.91199 3.97925 4.02186 4.25073 4.37873 4.46112 4.49378 4.59087 4.66598 4.70618 4.77263 4.79922 4.84753 4.89356 4.97028 5.07012 5.08719 5.15729 5.26459 5.31352 5.38673 5.45682 5.53436 5.58665 5.64702 5.81869 6.20999 6.36752 6.52616 6.79700 7.15824 7.16501 7.86951 8.39961 9.21984 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.001943 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.904350 B =14409.386484 C =15042.380802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.386 5.386 3 N -0.030 5.030 4 N -0.244 5.244 5 C -0.050 4.050 6 C 0.018 3.982 7 C -0.147 4.147 8 C 0.562 3.438 9 O -0.580 6.580 10 N -0.702 5.702 11 C 0.166 3.834 12 C -0.138 4.138 13 C -0.140 4.140 14 C 0.203 3.797 15 N -0.616 5.616 16 C -0.252 4.252 17 H 0.070 0.930 18 C -0.055 4.055 19 N -0.938 5.938 20 Si 0.964 3.036 21 H -0.268 1.268 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.138 3.862 25 C -0.085 4.085 26 C -0.035 4.035 27 C -0.106 4.106 28 C 0.100 3.900 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.414 0.586 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.018 0.982 38 H 0.055 0.945 39 H 0.249 0.751 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.174 0.826 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 21.344 4.734 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.180 5.180 3 N -0.010 5.010 4 N -0.122 5.122 5 C -0.175 4.175 6 C -0.005 4.005 7 C -0.154 4.154 8 C 0.350 3.650 9 O -0.461 6.461 10 N -0.353 5.353 11 C 0.043 3.957 12 C -0.139 4.139 13 C -0.160 4.160 14 C 0.078 3.922 15 N -0.340 5.340 16 C -0.382 4.382 17 H 0.088 0.912 18 C -0.250 4.250 19 N -0.585 5.585 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.220 1.220 23 H -0.220 1.220 24 C 0.013 3.987 25 C -0.124 4.124 26 C -0.057 4.057 27 C -0.128 4.128 28 C -0.023 4.023 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.253 0.747 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.191 0.809 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.280 23.081 4.635 26.105 hybrid contribution 0.182 -2.003 -0.409 2.052 sum -11.098 21.078 4.226 24.193 Atomic orbital electron populations 1.22575 0.69548 1.07397 1.06085 1.50523 1.09448 1.02481 1.55582 1.81544 0.94181 1.08980 1.16288 1.74839 1.12097 1.11460 1.13833 1.19988 0.94393 0.90037 1.13036 1.20487 0.98074 0.90588 0.91358 1.19580 0.94215 0.92252 1.09327 1.18292 0.88223 0.82670 0.75815 1.90779 1.24039 1.79258 1.52027 1.45862 1.11139 1.04497 1.73841 1.20277 0.88339 0.84834 1.02206 1.20570 1.03291 0.94586 0.95418 1.22956 0.97964 0.97203 0.97899 1.19443 0.96973 0.88497 0.87258 1.44456 1.73775 1.09741 1.06012 1.19527 1.36530 0.86668 0.95489 0.91241 1.25692 1.00976 1.00903 0.97414 1.70155 1.45147 1.37741 1.05475 0.85246 0.77950 0.79876 0.77636 1.19220 1.22001 1.22034 1.21166 0.94629 0.91878 0.91059 1.20709 1.00013 0.97524 0.94113 1.21251 0.89380 1.01867 0.93211 1.20143 1.02476 0.86350 1.03836 1.19827 0.90111 0.91791 1.00582 0.87994 0.87375 0.85903 0.84367 0.74743 0.91033 0.91808 0.86931 0.96429 0.92702 0.94195 0.92424 0.94887 0.92076 0.88987 0.80918 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 11.52 127.77 1.47 1.72 16 2 N -0.39 -5.65 4.11 -360.92 -1.48 -7.13 16 3 N -0.03 -0.66 13.72 37.02 0.51 -0.16 16 4 N -0.24 -6.29 12.40 -52.21 -0.65 -6.94 16 5 C -0.05 -1.13 7.26 39.57 0.29 -0.84 16 6 C 0.02 0.41 9.64 22.80 0.22 0.63 16 7 C -0.15 -2.79 5.87 -20.13 -0.12 -2.91 16 8 C 0.56 13.42 7.76 86.75 0.67 14.10 16 9 O -0.58 -18.74 16.31 -3.91 -0.06 -18.81 16 10 N -0.70 -14.37 5.50 -469.85 -2.58 -16.95 16 11 C 0.17 4.17 5.66 85.63 0.48 4.66 16 12 C -0.14 -4.01 5.22 -15.13 -0.08 -4.09 16 13 C -0.14 -4.80 9.47 27.11 0.26 -4.54 16 14 C 0.20 9.26 5.25 85.40 0.45 9.70 16 15 N -0.62 -29.21 3.01 -703.04 -2.12 -31.33 16 16 C -0.25 -13.39 9.71 84.03 0.82 -12.57 16 17 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 18 C -0.06 -3.00 5.01 84.86 0.43 -2.58 16 19 N -0.94 -53.83 11.07 21.65 0.24 -53.59 16 20 Si 0.96 44.14 29.58 68.60 2.03 46.17 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 C 0.14 5.04 6.57 86.26 0.57 5.61 16 25 C -0.08 -2.46 5.95 29.65 0.18 -2.29 16 26 C -0.04 -0.40 9.46 22.30 0.21 -0.19 16 27 C -0.11 -1.01 9.97 22.07 0.22 -0.79 16 28 C 0.10 1.61 6.93 39.16 0.27 1.88 16 29 H 0.10 0.02 8.14 -2.38 -0.02 0.00 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.14 3.35 7.62 -2.91 -0.02 3.33 16 33 H 0.41 6.23 6.46 -92.71 -0.60 5.63 16 34 H 0.07 1.83 8.11 -2.39 -0.02 1.81 16 35 H 0.06 1.72 7.78 -2.39 -0.02 1.70 16 36 H 0.11 3.45 7.73 -2.91 -0.02 3.42 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.05 2.90 6.39 -2.39 -0.02 2.88 16 39 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 40 H 0.06 2.08 7.96 -2.38 -0.02 2.06 16 41 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.17 0.92 6.36 -2.91 -0.02 0.90 16 45 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 Total: -1.00 -76.06 377.94 2.65 -73.41 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.43 Total: 7.81 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.33 Total: 7.51 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -6.08 Total: -116.10 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.06 Total: -18.81 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -76.06 2.65 -73.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000843753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.908 kcal (2) G-P(sol) polarization free energy of solvation -76.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds