Wall clock time and date at job start Wed Apr 1 2020 01:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.39804 * 125.34148 * 2 1 4 4 C 1.30197 * 110.13233 * 180.02562 * 3 2 1 5 5 C 1.45971 * 107.59003 * 0.02562 * 4 3 2 6 6 C 1.39656 * 134.12142 * 180.30598 * 5 4 3 7 7 C 1.39501 * 117.95083 * 180.15704 * 6 5 4 8 8 C 1.47687 * 120.41085 * 179.78737 * 7 6 5 9 9 O 1.21565 * 120.00125 * 359.71425 * 8 7 6 10 10 N 1.34778 * 120.00009 * 179.71734 * 8 7 6 11 11 C 1.46494 * 120.00050 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47477 * 179.97438 * 11 10 8 13 13 C 1.29451 * 117.69288 * 94.99671 * 12 11 10 14 14 C 1.50319 * 123.65529 * 181.13868 * 13 12 11 15 15 N 1.47132 * 109.10018 * 348.55136 * 14 13 12 16 16 C 1.36940 * 121.53393 * 223.15538 * 15 14 13 17 17 H 1.07991 * 120.00464 * 156.23153 * 16 15 14 18 18 C 1.38816 * 119.99712 * 336.23276 * 16 15 14 19 19 N 1.31620 * 119.99998 * 344.47735 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 164.47736 * 18 16 15 21 21 H 1.48492 * 109.47175 * 90.00094 * 20 18 16 22 22 H 1.48504 * 109.46897 * 209.99863 * 20 18 16 23 23 H 1.48499 * 109.47160 * 329.99876 * 20 18 16 24 24 C 1.47337 * 117.09112 * 43.37218 * 15 14 13 25 25 C 1.49968 * 117.69436 * 275.02765 * 12 11 10 26 26 C 1.40188 * 119.17929 * 359.50756 * 7 6 5 27 27 N 1.31185 * 121.37620 * 0.25328 * 26 7 6 28 28 C 1.32933 * 121.84332 * 0.02562 * 27 26 7 29 29 H 1.09003 * 109.46803 * 269.95430 * 1 2 3 30 30 H 1.08998 * 109.47592 * 29.95443 * 1 2 3 31 31 H 1.08999 * 109.47174 * 149.95724 * 1 2 3 32 32 H 1.07998 * 126.20576 * 179.97438 * 4 3 2 33 33 H 1.07999 * 121.02229 * 359.91530 * 6 5 4 34 34 H 0.97004 * 119.99771 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.46828 * 60.00377 * 11 10 8 36 36 H 1.08996 * 109.47550 * 300.00145 * 11 10 8 37 37 H 1.08004 * 118.17123 * 0.87021 * 13 12 11 38 38 H 1.09005 * 109.52227 * 108.64796 * 14 13 12 39 39 H 1.08988 * 109.52770 * 228.84266 * 14 13 12 40 40 H 0.97003 * 119.99843 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.78002 * 178.39736 * 24 15 14 42 42 H 1.09002 * 109.77673 * 57.59735 * 24 15 14 43 43 H 1.08996 * 109.31096 * 281.28435 * 25 12 11 44 44 H 1.08994 * 109.31663 * 40.71532 * 25 12 11 45 45 H 1.08001 * 119.31015 * 180.28192 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2736 1.1404 0.0000 4 6 3.5300 0.7988 -0.0005 5 6 3.5906 -0.6596 -0.0016 6 6 4.6327 -1.5894 0.0029 7 6 4.3002 -2.9442 -0.0034 8 6 5.3590 -3.9738 -0.0039 9 8 6.5287 -3.6428 -0.0040 10 7 5.0284 -5.2804 -0.0042 11 6 6.0786 -6.3017 -0.0052 12 6 5.4482 -7.6706 -0.0048 13 6 5.2863 -8.2587 -1.1466 14 6 4.6507 -9.6118 -1.3040 15 7 4.5159 -10.2374 0.0208 16 6 4.8187 -11.5574 0.2237 17 1 5.0859 -11.9047 1.2107 18 6 4.7822 -12.4492 -0.8395 19 7 4.1742 -12.1152 -1.9580 20 14 5.5960 -14.1233 -0.6827 21 1 4.6148 -15.1027 -0.1506 22 1 6.0682 -14.5711 -2.0175 23 1 6.7518 -14.0270 0.2447 24 6 4.0356 -9.3828 1.1207 25 6 5.0522 -8.2551 1.3182 26 6 2.9486 -3.3162 -0.0033 27 7 1.9928 -2.4177 -0.0024 28 6 2.2553 -1.1145 -0.0020 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 4.3742 1.4724 -0.0011 33 1 5.6642 -1.2694 0.0071 34 1 4.0950 -5.5445 -0.0046 35 1 6.6977 -6.1870 0.8845 36 1 6.6968 -6.1863 -0.8955 37 1 5.6228 -7.7468 -2.0361 38 1 3.6670 -9.5014 -1.7603 39 1 5.2789 -10.2379 -1.9375 40 1 4.1490 -12.7382 -2.7011 41 1 3.9537 -9.9700 2.0353 42 1 3.0635 -8.9622 0.8634 43 1 5.9370 -8.6507 1.8169 44 1 4.6100 -7.4758 1.9388 45 1 2.6888 -4.3645 -0.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001297291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:36 Heat of formation + Delta-G solvation = 113.937276 kcal Electronic energy + Delta-G solvation = -28084.104827 eV Core-core repulsion = 24104.425925 eV Total energy + Delta-G solvation = -3979.678902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01597 -39.96652 -38.23784 -37.65874 -35.06246 -34.25237 -33.02908 -32.08936 -31.17657 -30.48044 -29.72320 -27.57703 -26.79120 -24.71198 -24.25426 -23.48243 -22.73634 -21.36650 -21.16384 -20.81788 -18.43610 -18.12158 -17.62937 -17.09209 -16.30311 -16.08584 -15.71758 -15.46524 -15.29086 -14.94934 -14.62116 -14.28478 -13.91580 -13.90260 -13.76627 -13.58160 -13.47043 -13.36874 -13.00222 -12.94650 -12.66957 -12.28991 -12.07621 -11.60007 -11.57597 -11.40194 -10.94723 -10.89235 -10.74948 -10.50832 -10.37582 -10.30603 -9.85991 -9.78714 -9.63036 -9.51274 -9.10401 -8.71669 -8.69649 -8.10722 -6.78369 -5.83038 -3.21533 0.33056 0.44831 1.66886 1.97380 2.51288 2.67291 3.36032 3.37884 3.43368 3.45671 3.51334 3.65769 3.82461 4.13008 4.39994 4.46823 4.47493 4.67850 4.81064 4.85439 4.96197 5.04869 5.09045 5.18002 5.31683 5.36876 5.52856 5.62263 5.73549 5.78644 5.90327 5.97143 6.03458 6.13111 6.28711 6.30060 6.37208 6.48370 6.69900 6.83319 6.93182 7.12115 7.21723 7.27930 7.40054 7.47969 7.69353 7.78729 8.11631 8.34548 9.16002 9.78809 10.36759 11.27496 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.001960 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.486243 B =14280.451582 C =14935.563361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.393 5.393 3 N -0.241 5.241 4 C 0.097 3.903 5 C -0.240 4.240 6 C 0.073 3.927 7 C -0.231 4.231 8 C 0.567 3.433 9 O -0.543 6.543 10 N -0.715 5.715 11 C 0.158 3.842 12 C -0.168 4.168 13 C -0.122 4.122 14 C 0.193 3.807 15 N -0.595 5.595 16 C -0.245 4.245 17 H 0.069 0.931 18 C -0.002 4.002 19 N -0.910 5.910 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.143 3.857 25 C -0.090 4.090 26 C 0.207 3.793 27 N -0.503 5.503 28 C 0.329 3.671 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.206 0.794 33 H 0.155 0.845 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.042 0.958 39 H 0.094 0.906 40 H 0.254 0.746 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 24.643 3.403 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.182 5.182 3 N -0.053 5.053 4 C -0.102 4.102 5 C -0.250 4.250 6 C 0.044 3.956 7 C -0.239 4.239 8 C 0.354 3.646 9 O -0.422 6.422 10 N -0.366 5.366 11 C 0.036 3.964 12 C -0.169 4.169 13 C -0.143 4.143 14 C 0.068 3.932 15 N -0.318 5.318 16 C -0.375 4.375 17 H 0.087 0.913 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.734 3.266 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.016 3.984 25 C -0.129 4.129 26 C 0.036 3.964 27 N -0.217 5.217 28 C 0.090 3.910 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.223 0.777 33 H 0.173 0.827 34 H 0.236 0.764 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.060 0.940 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.128 25.551 3.266 26.265 hybrid contribution 1.228 -1.400 -0.075 1.864 sum -3.900 24.151 3.190 24.671 Atomic orbital electron populations 1.21877 0.73047 1.04685 1.03521 1.48151 1.06517 1.00007 1.63559 1.76751 1.02746 1.07373 1.18407 1.25152 0.94906 0.92524 0.97642 1.20471 0.94025 0.94837 1.15648 1.21171 0.99334 0.89980 0.85120 1.20705 0.94955 0.94593 1.13610 1.17822 0.87909 0.82299 0.76616 1.90777 1.19166 1.81592 1.50617 1.46104 1.10975 1.05112 1.74381 1.20497 0.89038 0.84750 1.02116 1.20490 1.05440 0.94712 0.96265 1.23306 0.95701 0.99119 0.96134 1.19794 0.97839 0.87338 0.88267 1.44164 1.76168 1.06960 1.04530 1.19165 1.39299 0.83471 0.95530 0.91344 1.24989 0.99718 0.97855 0.97401 1.70001 1.44310 1.36199 1.04995 0.86259 0.79378 0.83997 0.76936 1.21444 1.21567 1.20525 1.20960 0.93478 0.91384 0.92540 1.20757 1.00486 0.98122 0.93573 1.22933 0.86836 0.98447 0.88155 1.66693 1.37334 0.98472 1.19244 1.19154 0.88693 0.88200 0.94987 0.90855 0.89254 0.88911 0.77740 0.82713 0.76444 0.91311 0.91382 0.88703 0.94024 0.88810 0.93589 0.92452 0.95902 0.91706 0.92832 0.81232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 11.43 59.84 0.68 1.38 16 2 N -0.39 -3.86 4.03 -67.18 -0.27 -4.13 16 3 N -0.24 -2.30 12.39 31.87 0.39 -1.90 16 4 C 0.10 0.75 12.30 -15.15 -0.19 0.56 16 5 C -0.24 -2.34 6.36 -105.20 -0.67 -3.01 16 6 C 0.07 0.71 9.76 -38.58 -0.38 0.33 16 7 C -0.23 -2.45 5.89 -104.84 -0.62 -3.07 16 8 C 0.57 7.18 7.77 -12.40 -0.10 7.08 16 9 O -0.54 -8.59 16.40 5.31 0.09 -8.50 16 10 N -0.71 -8.50 5.50 -62.48 -0.34 -8.84 16 11 C 0.16 2.19 5.66 -5.19 -0.03 2.16 16 12 C -0.17 -2.70 5.22 -100.99 -0.53 -3.22 16 13 C -0.12 -2.19 9.47 -35.78 -0.34 -2.52 16 14 C 0.19 4.37 5.25 -5.03 -0.03 4.34 16 15 N -0.59 -14.35 3.01 -173.58 -0.52 -14.87 16 16 C -0.25 -6.56 9.71 -15.06 -0.15 -6.70 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 18 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 19 N -0.91 -25.66 11.07 55.49 0.61 -25.05 16 20 Si 0.90 21.37 29.58 -169.99 -5.03 16.35 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.14 2.81 6.57 -3.53 -0.02 2.78 16 25 C -0.09 -1.48 5.95 -28.18 -0.17 -1.64 16 26 C 0.21 2.03 10.69 -17.10 -0.18 1.85 16 27 N -0.50 -5.57 10.37 -12.03 -0.12 -5.70 16 28 C 0.33 3.62 7.96 -156.09 -1.24 2.37 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.21 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.16 1.30 7.72 -52.49 -0.41 0.89 16 34 H 0.40 4.01 6.50 -40.82 -0.27 3.75 16 35 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.07 0.98 7.78 -51.93 -0.40 0.57 16 37 H 0.09 1.52 7.73 -52.48 -0.41 1.12 16 38 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 2.40 6.39 -51.94 -0.33 2.07 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.06 1.11 7.96 -51.93 -0.41 0.69 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.17 1.25 6.39 -52.49 -0.34 0.92 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -33.40 378.50 -9.44 -42.83 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.91 Total: 1.55 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -4.03 Total: 2.56 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.25 Total: -60.49 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.40 -9.44 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001297291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.771 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds