Wall clock time and date at job start Wed Apr 1 2020 01:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.39804 * 125.34148 * 2 1 4 4 C 1.30197 * 110.13233 * 180.02562 * 3 2 1 5 5 C 1.45971 * 107.59003 * 0.02562 * 4 3 2 6 6 C 1.39656 * 134.12142 * 180.30598 * 5 4 3 7 7 C 1.39501 * 117.95083 * 180.15704 * 6 5 4 8 8 C 1.47687 * 120.41085 * 179.78737 * 7 6 5 9 9 O 1.21565 * 120.00125 * 359.71425 * 8 7 6 10 10 N 1.34778 * 120.00009 * 179.71734 * 8 7 6 11 11 C 1.46494 * 120.00050 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47477 * 179.97438 * 11 10 8 13 13 C 1.29451 * 117.69288 * 94.99671 * 12 11 10 14 14 C 1.50319 * 123.65529 * 181.13868 * 13 12 11 15 15 N 1.47132 * 109.10018 * 348.55136 * 14 13 12 16 16 C 1.36940 * 121.53393 * 223.15538 * 15 14 13 17 17 H 1.07991 * 120.00464 * 156.23153 * 16 15 14 18 18 C 1.38816 * 119.99712 * 336.23276 * 16 15 14 19 19 N 1.31620 * 119.99998 * 344.47735 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 164.47736 * 18 16 15 21 21 H 1.48492 * 109.47175 * 90.00094 * 20 18 16 22 22 H 1.48504 * 109.46897 * 209.99863 * 20 18 16 23 23 H 1.48499 * 109.47160 * 329.99876 * 20 18 16 24 24 C 1.47337 * 117.09112 * 43.37218 * 15 14 13 25 25 C 1.49968 * 117.69436 * 275.02765 * 12 11 10 26 26 C 1.40188 * 119.17929 * 359.50756 * 7 6 5 27 27 N 1.31185 * 121.37620 * 0.25328 * 26 7 6 28 28 C 1.32933 * 121.84332 * 0.02562 * 27 26 7 29 29 H 1.09003 * 109.46803 * 269.95430 * 1 2 3 30 30 H 1.08998 * 109.47592 * 29.95443 * 1 2 3 31 31 H 1.08999 * 109.47174 * 149.95724 * 1 2 3 32 32 H 1.07998 * 126.20576 * 179.97438 * 4 3 2 33 33 H 1.07999 * 121.02229 * 359.91530 * 6 5 4 34 34 H 0.97004 * 119.99771 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.46828 * 60.00377 * 11 10 8 36 36 H 1.08996 * 109.47550 * 300.00145 * 11 10 8 37 37 H 1.08004 * 118.17123 * 0.87021 * 13 12 11 38 38 H 1.09005 * 109.52227 * 108.64796 * 14 13 12 39 39 H 1.08988 * 109.52770 * 228.84266 * 14 13 12 40 40 H 0.97003 * 119.99843 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.78002 * 178.39736 * 24 15 14 42 42 H 1.09002 * 109.77673 * 57.59735 * 24 15 14 43 43 H 1.08996 * 109.31096 * 281.28435 * 25 12 11 44 44 H 1.08994 * 109.31663 * 40.71532 * 25 12 11 45 45 H 1.08001 * 119.31015 * 180.28192 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2736 1.1404 0.0000 4 6 3.5300 0.7988 -0.0005 5 6 3.5906 -0.6596 -0.0016 6 6 4.6327 -1.5894 0.0029 7 6 4.3002 -2.9442 -0.0034 8 6 5.3590 -3.9738 -0.0039 9 8 6.5287 -3.6428 -0.0040 10 7 5.0284 -5.2804 -0.0042 11 6 6.0786 -6.3017 -0.0052 12 6 5.4482 -7.6706 -0.0048 13 6 5.2863 -8.2587 -1.1466 14 6 4.6507 -9.6118 -1.3040 15 7 4.5159 -10.2374 0.0208 16 6 4.8187 -11.5574 0.2237 17 1 5.0859 -11.9047 1.2107 18 6 4.7822 -12.4492 -0.8395 19 7 4.1742 -12.1152 -1.9580 20 14 5.5960 -14.1233 -0.6827 21 1 4.6148 -15.1027 -0.1506 22 1 6.0682 -14.5711 -2.0175 23 1 6.7518 -14.0270 0.2447 24 6 4.0356 -9.3828 1.1207 25 6 5.0522 -8.2551 1.3182 26 6 2.9486 -3.3162 -0.0033 27 7 1.9928 -2.4177 -0.0024 28 6 2.2553 -1.1145 -0.0020 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 4.3742 1.4724 -0.0011 33 1 5.6642 -1.2694 0.0071 34 1 4.0950 -5.5445 -0.0046 35 1 6.6977 -6.1870 0.8845 36 1 6.6968 -6.1863 -0.8955 37 1 5.6228 -7.7468 -2.0361 38 1 3.6670 -9.5014 -1.7603 39 1 5.2789 -10.2379 -1.9375 40 1 4.1490 -12.7382 -2.7011 41 1 3.9537 -9.9700 2.0353 42 1 3.0635 -8.9622 0.8634 43 1 5.9370 -8.6507 1.8169 44 1 4.6100 -7.4758 1.9388 45 1 2.6888 -4.3645 -0.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001297291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:35 Heat of formation + Delta-G solvation = 92.761198 kcal Electronic energy + Delta-G solvation = -28085.023091 eV Core-core repulsion = 24104.425925 eV Total energy + Delta-G solvation = -3980.597166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.71518 -40.94094 -39.41651 -38.77153 -36.43056 -34.92088 -34.57758 -32.95604 -32.55806 -31.53199 -31.24113 -28.69398 -27.79689 -26.09510 -25.02716 -24.63672 -24.19349 -22.77036 -22.01658 -21.75331 -19.57459 -19.19943 -18.79808 -17.93363 -17.37987 -17.01342 -16.95698 -16.81069 -16.35466 -16.23095 -15.71815 -15.38320 -15.23227 -15.11102 -14.86681 -14.59186 -14.49333 -14.28012 -14.17342 -13.88925 -13.58847 -13.44807 -13.31948 -13.24046 -12.87864 -12.77421 -12.56020 -12.25572 -12.22598 -12.08308 -11.67752 -11.61722 -11.41096 -11.19508 -10.67096 -10.60127 -10.25354 -10.11964 -9.62012 -9.42358 -8.72578 -7.86811 -5.27158 -0.36485 -0.33497 1.05347 1.20553 1.34387 1.47697 1.49648 1.58657 1.77315 2.33281 2.52683 2.70781 3.00863 3.17459 3.30590 3.48606 3.63779 3.65742 3.75215 3.88367 3.97525 4.02002 4.25521 4.37085 4.39980 4.47264 4.49383 4.57969 4.64574 4.70110 4.79402 4.87343 4.91220 4.96966 5.10020 5.14730 5.25367 5.32068 5.36355 5.44612 5.52419 5.63611 5.63665 5.81011 6.20686 6.26888 6.35995 6.50777 6.68793 7.15242 7.15745 7.86057 8.39538 9.21650 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.001960 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.486243 B =14280.451582 C =14935.563361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.400 5.400 3 N -0.263 5.263 4 C 0.110 3.890 5 C -0.251 4.251 6 C 0.079 3.921 7 C -0.242 4.242 8 C 0.574 3.426 9 O -0.576 6.576 10 N -0.707 5.707 11 C 0.168 3.832 12 C -0.139 4.139 13 C -0.141 4.141 14 C 0.203 3.797 15 N -0.616 5.616 16 C -0.254 4.254 17 H 0.070 0.930 18 C -0.056 4.056 19 N -0.939 5.939 20 Si 0.966 3.034 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.272 1.272 24 C 0.137 3.863 25 C -0.085 4.085 26 C 0.211 3.789 27 N -0.520 5.520 28 C 0.310 3.690 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.246 0.754 33 H 0.167 0.833 34 H 0.411 0.589 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.015 0.985 39 H 0.056 0.944 40 H 0.249 0.751 41 H 0.057 0.943 42 H 0.029 0.971 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 26.525 4.633 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.190 5.190 3 N -0.074 5.074 4 C -0.088 4.088 5 C -0.261 4.261 6 C 0.051 3.949 7 C -0.250 4.250 8 C 0.362 3.638 9 O -0.457 6.457 10 N -0.358 5.358 11 C 0.046 3.954 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.078 3.922 15 N -0.340 5.340 16 C -0.384 4.384 17 H 0.088 0.912 18 C -0.250 4.250 19 N -0.586 5.586 20 Si 0.794 3.206 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.197 1.197 24 C 0.012 3.988 25 C -0.123 4.123 26 C 0.040 3.960 27 N -0.235 5.235 28 C 0.070 3.930 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.261 0.739 33 H 0.185 0.815 34 H 0.248 0.752 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.728 27.465 4.524 28.234 hybrid contribution 1.035 -1.892 -0.380 2.190 sum -3.693 25.574 4.144 26.169 Atomic orbital electron populations 1.22084 0.71717 1.05512 1.04374 1.48480 1.07507 0.99777 1.63212 1.76751 1.03493 1.07574 1.19624 1.25833 0.95405 0.92105 0.95453 1.20685 0.93539 0.95915 1.15983 1.21334 0.99956 0.89730 0.83882 1.20540 0.94638 0.94420 1.15360 1.17981 0.87752 0.82470 0.75613 1.90764 1.20594 1.82047 1.52296 1.45911 1.11142 1.04645 1.74133 1.20273 0.89220 0.83592 1.02363 1.20598 1.02784 0.95256 0.95353 1.22956 0.97994 0.97185 0.97958 1.19440 0.96309 0.89203 0.87243 1.44452 1.76705 1.06861 1.05946 1.19492 1.38472 0.84904 0.95544 0.91226 1.25720 1.00750 1.01193 0.97372 1.70159 1.45806 1.37091 1.05530 0.85291 0.78541 0.80171 0.76554 1.21213 1.22056 1.19705 1.21162 0.94696 0.91845 0.91126 1.20698 0.99584 0.97845 0.94195 1.23226 0.86386 0.99231 0.87171 1.66731 1.37775 0.98810 1.20141 1.19500 0.89735 0.88539 0.95230 0.89972 0.87788 0.88763 0.73854 0.81529 0.75175 0.90822 0.91562 0.86815 0.96701 0.92577 0.94179 0.92406 0.95252 0.91868 0.89146 0.79251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.19 11.43 127.77 1.46 2.66 16 2 N -0.40 -7.36 4.03 -366.45 -1.48 -8.84 16 3 N -0.26 -4.56 12.39 -53.08 -0.66 -5.21 16 4 C 0.11 1.45 12.30 86.94 1.07 2.52 16 5 C -0.25 -4.44 6.36 -20.24 -0.13 -4.57 16 6 C 0.08 1.40 9.76 22.92 0.22 1.62 16 7 C -0.24 -4.68 5.89 -20.00 -0.12 -4.80 16 8 C 0.57 13.31 7.77 86.74 0.67 13.98 16 9 O -0.58 -17.17 16.40 -3.92 -0.06 -17.24 16 10 N -0.71 -14.94 5.50 -469.87 -2.58 -17.52 16 11 C 0.17 4.22 5.66 85.64 0.48 4.71 16 12 C -0.14 -4.16 5.22 -15.13 -0.08 -4.24 16 13 C -0.14 -4.95 9.47 27.11 0.26 -4.69 16 14 C 0.20 9.48 5.25 85.39 0.45 9.93 16 15 N -0.62 -29.94 3.01 -703.09 -2.12 -32.05 16 16 C -0.25 -13.73 9.71 84.03 0.82 -12.91 16 17 H 0.07 3.65 7.88 -2.92 -0.02 3.63 16 18 C -0.06 -3.07 5.01 84.86 0.43 -2.65 16 19 N -0.94 -54.72 11.07 21.65 0.24 -54.48 16 20 Si 0.97 44.61 29.58 68.60 2.03 46.64 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.14 5.22 6.57 86.25 0.57 5.78 16 25 C -0.08 -2.54 5.95 29.65 0.18 -2.37 16 26 C 0.21 3.76 10.69 85.26 0.91 4.67 16 27 N -0.52 -10.84 10.37 -191.96 -1.99 -12.83 16 28 C 0.31 6.41 7.96 134.17 1.07 7.48 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.25 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.17 2.45 7.72 -2.91 -0.02 2.43 16 34 H 0.41 7.03 6.50 -92.71 -0.60 6.43 16 35 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 36 H 0.07 1.75 7.78 -2.39 -0.02 1.73 16 37 H 0.11 3.55 7.73 -2.91 -0.02 3.53 16 38 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.06 3.01 6.39 -2.39 -0.02 2.99 16 40 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.06 2.16 7.96 -2.39 -0.02 2.14 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.19 2.37 6.39 -2.91 -0.02 2.35 16 Total: -1.00 -73.36 378.50 2.06 -71.30 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.43 Total: 13.13 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 8.26 Total: 17.11 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -8.59 Total: -130.94 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.06 Total: -17.24 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -73.36 2.06 -71.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001297291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.057 kcal (2) G-P(sol) polarization free energy of solvation -73.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds