Wall clock time and date at job start Wed Apr 1 2020 01:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28820 * 125.93581 * 2 1 4 4 N 1.28643 * 111.78709 * 179.97438 * 3 2 1 5 5 C 1.34752 * 109.29697 * 359.97438 * 4 3 2 6 6 C 1.39906 * 134.59739 * 180.02562 * 5 4 3 7 7 C 1.36163 * 119.98085 * 179.97438 * 6 5 4 8 8 C 1.40255 * 120.55388 * 0.02562 * 7 6 5 9 9 C 1.47724 * 119.87816 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99551 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99836 * 359.97438 * 9 8 7 12 12 C 1.46498 * 119.99504 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46781 * 180.02562 * 12 11 9 14 14 C 1.29453 * 117.69778 * 95.00401 * 13 12 11 15 15 C 1.50314 * 123.65486 * 181.13771 * 14 13 12 16 16 N 1.47126 * 109.10610 * 348.54061 * 15 14 13 17 17 C 1.36937 * 121.53633 * 223.15752 * 16 15 14 18 18 H 1.07997 * 119.99691 * 156.35057 * 17 16 15 19 19 C 1.38812 * 119.99919 * 336.35140 * 17 16 15 20 20 N 1.31617 * 120.00056 * 344.28136 * 19 17 16 21 21 Si 1.86801 * 120.00087 * 164.27882 * 19 17 16 22 22 H 1.48495 * 109.46836 * 94.57576 * 21 19 17 23 23 H 1.48492 * 109.47207 * 214.57842 * 21 19 17 24 24 H 1.48505 * 109.46960 * 334.57989 * 21 19 17 25 25 C 1.47346 * 117.08841 * 43.37697 * 16 15 14 26 26 C 1.49970 * 117.69333 * 275.02128 * 13 12 11 27 27 C 1.39162 * 120.24126 * 0.23436 * 8 7 6 28 28 C 1.37358 * 125.94765 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46741 * 90.02860 * 1 2 3 30 30 H 1.09002 * 109.46700 * 210.02050 * 1 2 3 31 31 H 1.08995 * 109.47327 * 330.02638 * 1 2 3 32 32 H 1.08003 * 120.01137 * 359.95730 * 6 5 4 33 33 H 1.07994 * 119.71974 * 180.02562 * 7 6 5 34 34 H 0.96995 * 119.99583 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47155 * 60.00202 * 12 11 9 36 36 H 1.08999 * 109.47680 * 299.99858 * 12 11 9 37 37 H 1.07999 * 118.16688 * 0.85284 * 14 13 12 38 38 H 1.09007 * 109.52348 * 108.64837 * 15 14 13 39 39 H 1.09001 * 109.52266 * 228.83155 * 15 14 13 40 40 H 0.97002 * 120.00389 * 180.02562 * 20 19 17 41 41 H 1.08993 * 109.77660 * 178.40331 * 25 16 15 42 42 H 1.09000 * 109.77612 * 57.59524 * 25 16 15 43 43 H 1.09000 * 109.31771 * 281.29104 * 26 13 12 44 44 H 1.09004 * 109.31612 * 40.71818 * 26 13 12 45 45 H 1.08002 * 120.24710 * 179.72883 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0430 0.0000 4 7 3.4685 0.7286 0.0005 5 6 3.5894 -0.6135 0.0015 6 6 4.6697 -1.5025 0.0028 7 6 4.4457 -2.8455 0.0041 8 6 3.1371 -3.3501 0.0035 9 6 2.9113 -4.8100 0.0043 10 8 1.7779 -5.2497 0.0033 11 7 3.9618 -5.6544 0.0051 12 6 3.7378 -7.1021 0.0064 13 6 5.0651 -7.8157 0.0077 14 6 5.5473 -8.1876 1.1501 15 6 6.8691 -8.8854 1.3090 16 7 7.3547 -9.3045 -0.0150 17 6 7.9077 -10.5409 -0.2168 18 1 7.9059 -10.9785 -1.2042 19 6 8.4703 -11.2316 0.8476 20 7 8.7553 -10.5987 1.9659 21 14 8.8230 -13.0595 0.6931 22 1 10.2321 -13.2575 0.2686 23 1 8.6040 -13.7186 2.0055 24 1 7.9131 -13.6554 -0.3181 25 6 7.2250 -8.3332 -1.1155 26 6 5.7346 -8.0447 -1.3146 27 6 2.0506 -2.4806 -0.0033 28 6 2.2714 -1.1120 0.0005 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 5.6811 -1.1235 0.0026 33 1 5.2828 -3.5279 0.0055 34 1 4.8660 -5.3034 0.0055 35 1 3.1744 -7.3835 -0.8833 36 1 3.1745 -7.3819 0.8967 37 1 4.9696 -7.9809 2.0389 38 1 7.5877 -8.2049 1.7659 39 1 6.7436 -9.7633 1.9429 40 1 9.1488 -11.0813 2.7097 41 1 7.6447 -8.7533 -2.0295 42 1 7.7478 -7.4121 -0.8580 43 1 5.2666 -8.8934 -1.8135 44 1 5.6192 -7.1565 -1.9358 45 1 1.0429 -2.8690 -0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001405451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:52 Heat of formation + Delta-G solvation = 126.138411 kcal Electronic energy + Delta-G solvation = -28145.981104 eV Core-core repulsion = 24166.831283 eV Total energy + Delta-G solvation = -3979.149821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.57447 -40.18294 -38.09656 -37.50782 -35.31788 -35.07358 -33.05747 -31.40009 -31.22717 -30.64314 -29.75397 -28.38107 -27.16172 -25.08635 -23.96051 -23.71045 -22.77190 -21.55857 -21.21969 -20.97058 -18.79383 -18.13239 -17.68202 -17.14122 -17.05324 -16.22263 -15.74940 -15.38983 -15.10240 -14.96531 -14.68293 -14.38436 -14.04786 -13.90291 -13.72251 -13.69701 -13.46809 -13.35546 -13.08905 -12.53098 -12.45705 -12.27983 -12.10575 -12.06331 -11.61877 -11.42028 -11.21513 -11.10897 -10.96167 -10.76405 -10.48106 -10.36503 -10.19204 -9.87425 -9.65689 -9.43484 -9.10326 -8.75543 -8.73076 -8.13312 -6.80156 -5.84507 -3.22867 -0.06014 0.76038 1.70133 1.73567 2.47725 2.64303 3.27940 3.35110 3.40844 3.42584 3.44777 3.57698 3.97167 4.20348 4.40842 4.45699 4.45824 4.58839 4.61009 4.74851 4.86237 4.90569 5.09940 5.28540 5.34915 5.43853 5.51753 5.57128 5.73618 5.75668 5.80838 5.87331 6.00701 6.01979 6.10197 6.14063 6.27658 6.33006 6.45626 6.67804 6.81181 7.09610 7.19248 7.25388 7.42590 7.67429 7.76887 7.89392 8.04243 8.32928 9.14477 9.77305 10.35125 11.26072 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028766 B = 0.001916 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.144832 B =14609.630687 C =15064.274427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.315 5.315 3 N -0.016 5.016 4 N -0.257 5.257 5 C 0.028 3.972 6 C -0.052 4.052 7 C -0.090 4.090 8 C -0.099 4.099 9 C 0.557 3.443 10 O -0.541 6.541 11 N -0.710 5.710 12 C 0.157 3.843 13 C -0.169 4.169 14 C -0.121 4.121 15 C 0.192 3.808 16 N -0.595 5.595 17 C -0.246 4.246 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.910 5.910 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.143 3.857 26 C -0.090 4.090 27 C -0.034 4.034 28 C 0.012 3.988 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.254 0.746 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.784 19.440 -3.453 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.116 5.116 3 N 0.003 4.997 4 N -0.131 5.131 5 C -0.098 4.098 6 C -0.075 4.075 7 C -0.111 4.111 8 C -0.106 4.106 9 C 0.343 3.657 10 O -0.420 6.420 11 N -0.361 5.361 12 C 0.035 3.965 13 C -0.169 4.169 14 C -0.142 4.142 15 C 0.067 3.933 16 N -0.318 5.318 17 C -0.375 4.375 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.016 3.984 26 C -0.129 4.129 27 C -0.057 4.057 28 C -0.106 4.106 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.239 0.761 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.060 0.940 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.559 20.546 -3.317 25.985 hybrid contribution 0.316 -1.829 0.087 1.858 sum -15.243 18.717 -3.230 24.354 Atomic orbital electron populations 1.22304 0.71826 1.06194 1.05223 1.47143 1.08929 1.02962 1.52559 1.78009 0.96943 1.12303 1.12435 1.75382 1.07523 1.11301 1.18865 1.20108 0.93240 0.91232 1.05232 1.19957 0.97749 0.90995 0.98756 1.20952 0.96106 0.95278 0.98788 1.19804 0.93337 0.93339 1.04167 1.18038 0.85103 0.85559 0.76984 1.90779 1.22476 1.78421 1.50289 1.46120 1.09074 1.07177 1.73778 1.20519 0.96153 0.77698 1.02133 1.20482 0.96144 1.04025 0.96299 1.23310 0.98995 0.95767 0.96109 1.19796 0.87358 0.97806 0.88299 1.44164 1.70033 1.13066 1.04542 1.19173 1.30919 0.91929 0.95469 0.91322 1.24984 0.98753 0.98825 0.97386 1.70000 1.46031 1.34474 1.04982 0.86244 0.78048 0.85270 0.77031 1.21487 1.21565 1.20465 1.20961 0.92036 0.92812 0.92552 1.20761 0.98693 0.99938 0.93549 1.20041 1.00418 0.87589 0.97646 1.19613 0.91061 0.90811 1.09151 0.88933 0.88132 0.87687 0.83551 0.83883 0.76138 0.91267 0.91359 0.88714 0.93990 0.88794 0.93583 0.92426 0.95892 0.91706 0.92836 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 11.41 59.85 0.68 0.99 16 2 N -0.32 -2.77 3.80 -65.54 -0.25 -3.02 16 3 N -0.02 -0.18 13.07 60.35 0.79 0.61 16 4 N -0.26 -3.19 12.42 32.09 0.40 -2.79 16 5 C 0.03 0.31 7.36 -84.95 -0.63 -0.32 16 6 C -0.05 -0.46 10.03 -39.70 -0.40 -0.86 16 7 C -0.09 -0.75 9.46 -39.57 -0.37 -1.13 16 8 C -0.10 -1.01 5.88 -104.92 -0.62 -1.62 16 9 C 0.56 6.87 7.77 -12.38 -0.10 6.78 16 10 O -0.54 -8.36 16.32 5.31 0.09 -8.28 16 11 N -0.71 -8.27 5.50 -62.47 -0.34 -8.61 16 12 C 0.16 2.14 5.66 -5.19 -0.03 2.11 16 13 C -0.17 -2.66 5.22 -100.99 -0.53 -3.19 16 14 C -0.12 -2.15 9.47 -35.78 -0.34 -2.48 16 15 C 0.19 4.33 5.25 -5.04 -0.03 4.30 16 16 N -0.59 -14.22 3.01 -173.57 -0.52 -14.75 16 17 C -0.25 -6.53 9.71 -15.06 -0.15 -6.67 16 18 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 19 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 20 N -0.91 -25.52 11.07 55.49 0.61 -24.91 16 21 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.14 2.78 6.57 -3.53 -0.02 2.75 16 26 C -0.09 -1.46 5.95 -28.18 -0.17 -1.62 16 27 C -0.03 -0.33 9.59 -39.10 -0.38 -0.70 16 28 C 0.01 0.12 6.94 -84.23 -0.58 -0.46 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.14 0.90 6.36 -52.49 -0.33 0.56 16 34 H 0.40 3.95 6.46 -40.82 -0.26 3.69 16 35 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.07 0.96 7.78 -51.93 -0.40 0.56 16 37 H 0.09 1.50 7.73 -52.49 -0.41 1.09 16 38 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16 39 H 0.09 2.39 6.39 -51.93 -0.33 2.05 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.15 1.24 7.63 -52.49 -0.40 0.84 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -33.31 377.04 -8.21 -41.52 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.90 Total: 0.57 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -3.73 Total: -2.27 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.69 Total: -53.46 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.31 -8.21 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001405451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.659 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds