Wall clock time and date at job start Wed Apr 1 2020 01:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28820 * 125.93581 * 2 1 4 4 N 1.28643 * 111.78709 * 179.97438 * 3 2 1 5 5 C 1.34752 * 109.29697 * 359.97438 * 4 3 2 6 6 C 1.39906 * 134.59739 * 180.02562 * 5 4 3 7 7 C 1.36163 * 119.98085 * 179.97438 * 6 5 4 8 8 C 1.40255 * 120.55388 * 0.02562 * 7 6 5 9 9 C 1.47724 * 119.87816 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99551 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99836 * 359.97438 * 9 8 7 12 12 C 1.46498 * 119.99504 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46781 * 180.02562 * 12 11 9 14 14 C 1.29453 * 117.69778 * 95.00401 * 13 12 11 15 15 C 1.50314 * 123.65486 * 181.13771 * 14 13 12 16 16 N 1.47126 * 109.10610 * 348.54061 * 15 14 13 17 17 C 1.36937 * 121.53633 * 223.15752 * 16 15 14 18 18 H 1.07997 * 119.99691 * 156.35057 * 17 16 15 19 19 C 1.38812 * 119.99919 * 336.35140 * 17 16 15 20 20 N 1.31617 * 120.00056 * 344.28136 * 19 17 16 21 21 Si 1.86801 * 120.00087 * 164.27882 * 19 17 16 22 22 H 1.48495 * 109.46836 * 94.57576 * 21 19 17 23 23 H 1.48492 * 109.47207 * 214.57842 * 21 19 17 24 24 H 1.48505 * 109.46960 * 334.57989 * 21 19 17 25 25 C 1.47346 * 117.08841 * 43.37697 * 16 15 14 26 26 C 1.49970 * 117.69333 * 275.02128 * 13 12 11 27 27 C 1.39162 * 120.24126 * 0.23436 * 8 7 6 28 28 C 1.37358 * 125.94765 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46741 * 90.02860 * 1 2 3 30 30 H 1.09002 * 109.46700 * 210.02050 * 1 2 3 31 31 H 1.08995 * 109.47327 * 330.02638 * 1 2 3 32 32 H 1.08003 * 120.01137 * 359.95730 * 6 5 4 33 33 H 1.07994 * 119.71974 * 180.02562 * 7 6 5 34 34 H 0.96995 * 119.99583 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47155 * 60.00202 * 12 11 9 36 36 H 1.08999 * 109.47680 * 299.99858 * 12 11 9 37 37 H 1.07999 * 118.16688 * 0.85284 * 14 13 12 38 38 H 1.09007 * 109.52348 * 108.64837 * 15 14 13 39 39 H 1.09001 * 109.52266 * 228.83155 * 15 14 13 40 40 H 0.97002 * 120.00389 * 180.02562 * 20 19 17 41 41 H 1.08993 * 109.77660 * 178.40331 * 25 16 15 42 42 H 1.09000 * 109.77612 * 57.59524 * 25 16 15 43 43 H 1.09000 * 109.31771 * 281.29104 * 26 13 12 44 44 H 1.09004 * 109.31612 * 40.71818 * 26 13 12 45 45 H 1.08002 * 120.24710 * 179.72883 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0430 0.0000 4 7 3.4685 0.7286 0.0005 5 6 3.5894 -0.6135 0.0015 6 6 4.6697 -1.5025 0.0028 7 6 4.4457 -2.8455 0.0041 8 6 3.1371 -3.3501 0.0035 9 6 2.9113 -4.8100 0.0043 10 8 1.7779 -5.2497 0.0033 11 7 3.9618 -5.6544 0.0051 12 6 3.7378 -7.1021 0.0064 13 6 5.0651 -7.8157 0.0077 14 6 5.5473 -8.1876 1.1501 15 6 6.8691 -8.8854 1.3090 16 7 7.3547 -9.3045 -0.0150 17 6 7.9077 -10.5409 -0.2168 18 1 7.9059 -10.9785 -1.2042 19 6 8.4703 -11.2316 0.8476 20 7 8.7553 -10.5987 1.9659 21 14 8.8230 -13.0595 0.6931 22 1 10.2321 -13.2575 0.2686 23 1 8.6040 -13.7186 2.0055 24 1 7.9131 -13.6554 -0.3181 25 6 7.2250 -8.3332 -1.1155 26 6 5.7346 -8.0447 -1.3146 27 6 2.0506 -2.4806 -0.0033 28 6 2.2714 -1.1120 0.0005 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 5.6811 -1.1235 0.0026 33 1 5.2828 -3.5279 0.0055 34 1 4.8660 -5.3034 0.0055 35 1 3.1744 -7.3835 -0.8833 36 1 3.1745 -7.3819 0.8967 37 1 4.9696 -7.9809 2.0389 38 1 7.5877 -8.2049 1.7659 39 1 6.7436 -9.7633 1.9429 40 1 9.1488 -11.0813 2.7097 41 1 7.6447 -8.7533 -2.0295 42 1 7.7478 -7.4121 -0.8580 43 1 5.2666 -8.8934 -1.8135 44 1 5.6192 -7.1565 -1.9358 45 1 1.0429 -2.8690 -0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001405451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:51 Heat of formation + Delta-G solvation = 104.347950 kcal Electronic energy + Delta-G solvation = -28146.926009 eV Core-core repulsion = 24166.831283 eV Total energy + Delta-G solvation = -3980.094727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.29780 -41.13876 -39.41685 -38.45373 -36.45308 -35.92791 -34.59309 -32.79242 -31.90271 -31.75289 -31.32530 -28.93998 -28.54143 -26.39381 -25.02178 -24.63730 -24.26604 -22.79321 -22.22736 -21.89243 -19.73509 -19.36473 -18.79393 -17.96468 -17.81135 -17.33848 -17.05007 -16.93568 -16.29065 -15.95414 -15.71641 -15.39294 -15.30186 -15.17468 -14.91980 -14.52820 -14.38158 -14.35177 -13.93889 -13.79800 -13.63227 -13.26658 -13.23641 -13.11178 -12.85251 -12.81066 -12.76227 -12.56152 -12.21591 -12.08123 -11.84883 -11.83592 -11.67349 -11.30694 -11.15855 -10.66437 -10.27481 -10.02450 -9.62493 -9.45653 -8.72345 -7.86705 -5.26701 -0.80974 0.06719 0.95621 1.10890 1.23972 1.47698 1.49826 1.58938 1.78902 2.29387 2.52827 2.62956 2.85166 3.30746 3.43812 3.54865 3.61046 3.65615 3.88318 3.91449 3.94986 4.01524 4.21164 4.26025 4.42455 4.48711 4.56920 4.58169 4.68430 4.77667 4.82008 4.85034 4.88764 4.96607 5.08396 5.13577 5.15058 5.25507 5.31554 5.40551 5.44334 5.49849 5.52764 5.63983 5.80880 6.20453 6.36205 6.49011 7.11140 7.13632 7.15926 7.86474 8.39702 9.21792 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028766 B = 0.001916 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.144832 B =14609.630687 C =15064.274427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.304 5.304 3 N -0.031 5.031 4 N -0.291 5.291 5 C 0.011 3.989 6 C -0.057 4.057 7 C -0.079 4.079 8 C -0.109 4.109 9 C 0.562 3.438 10 O -0.574 6.574 11 N -0.702 5.702 12 C 0.167 3.833 13 C -0.139 4.139 14 C -0.140 4.140 15 C 0.203 3.797 16 N -0.615 5.615 17 C -0.254 4.254 18 H 0.070 0.930 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.965 3.035 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.271 1.271 25 C 0.137 3.863 26 C -0.085 4.085 27 C -0.028 4.028 28 C 0.002 3.998 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.414 0.586 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.016 0.984 39 H 0.056 0.944 40 H 0.249 0.751 41 H 0.057 0.943 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.187 20.100 -4.693 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.105 5.105 3 N -0.012 5.012 4 N -0.164 5.164 5 C -0.115 4.115 6 C -0.079 4.079 7 C -0.100 4.100 8 C -0.116 4.116 9 C 0.350 3.650 10 O -0.455 6.455 11 N -0.354 5.354 12 C 0.044 3.956 13 C -0.140 4.140 14 C -0.160 4.160 15 C 0.078 3.922 16 N -0.339 5.339 17 C -0.384 4.384 18 H 0.088 0.912 19 C -0.250 4.250 20 N -0.586 5.586 21 Si 0.794 3.206 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.196 1.196 25 C 0.012 3.988 26 C -0.123 4.123 27 C -0.050 4.050 28 C -0.117 4.117 29 H 0.129 0.871 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.252 0.748 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.969 21.248 -4.584 27.577 hybrid contribution 0.678 -1.956 0.392 2.107 sum -16.291 19.293 -4.193 25.597 Atomic orbital electron populations 1.22800 0.69087 1.07957 1.06984 1.47563 1.10377 1.02086 1.50516 1.77923 0.97065 1.13186 1.12984 1.75329 1.08277 1.12280 1.20555 1.20524 0.94494 0.91124 1.05401 1.20204 0.98221 0.90903 0.98551 1.21134 0.96041 0.95394 0.97474 1.19682 0.94305 0.92013 1.05566 1.18226 0.84480 0.86268 0.75999 1.90769 1.23737 1.79076 1.51892 1.45925 1.09703 1.06241 1.73521 1.20294 0.94324 0.78559 1.02390 1.20587 0.96294 1.01760 0.95367 1.22955 0.97595 0.97512 0.97945 1.19444 0.89372 0.96163 0.87258 1.44452 1.70154 1.13360 1.05982 1.19496 1.30120 0.93293 0.95454 0.91234 1.25703 0.99480 1.02448 0.97378 1.70155 1.47310 1.35589 1.05510 0.85288 0.77790 0.80869 0.76684 1.21376 1.22075 1.19605 1.21167 0.94543 0.92026 0.91101 1.20702 0.95920 1.01524 0.94182 1.20116 1.00846 0.87297 0.96784 1.19705 0.91099 0.91186 1.09744 0.87116 0.86349 0.86064 0.81738 0.81570 0.74831 0.90778 0.91536 0.86817 0.96622 0.92609 0.94181 0.92425 0.95142 0.91928 0.89083 0.82807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.41 127.77 1.46 1.81 16 2 N -0.30 -4.90 3.80 -361.26 -1.37 -6.28 16 3 N -0.03 -0.67 13.07 37.02 0.48 -0.18 16 4 N -0.29 -7.13 12.42 -52.38 -0.65 -7.78 16 5 C 0.01 0.24 7.36 39.75 0.29 0.53 16 6 C -0.06 -0.90 10.03 22.19 0.22 -0.68 16 7 C -0.08 -1.12 9.46 22.28 0.21 -0.91 16 8 C -0.11 -1.94 5.88 -20.06 -0.12 -2.06 16 9 C 0.56 12.41 7.77 86.75 0.67 13.08 16 10 O -0.57 -16.51 16.32 -3.93 -0.06 -16.57 16 11 N -0.70 -14.09 5.50 -469.82 -2.58 -16.67 16 12 C 0.17 4.04 5.66 85.63 0.48 4.53 16 13 C -0.14 -4.05 5.22 -15.14 -0.08 -4.13 16 14 C -0.14 -4.81 9.47 27.10 0.26 -4.55 16 15 C 0.20 9.32 5.25 85.39 0.45 9.77 16 16 N -0.62 -29.53 3.01 -703.07 -2.12 -31.64 16 17 C -0.25 -13.58 9.71 84.03 0.82 -12.76 16 18 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 19 C -0.06 -3.04 5.01 84.86 0.43 -2.61 16 20 N -0.94 -54.30 11.07 21.65 0.24 -54.06 16 21 Si 0.97 44.31 29.58 68.60 2.03 46.34 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C 0.14 5.11 6.57 86.25 0.57 5.68 16 26 C -0.08 -2.48 5.95 29.65 0.18 -2.30 16 27 C -0.03 -0.48 9.59 22.58 0.22 -0.26 16 28 C 0.00 0.04 6.94 39.02 0.27 0.31 16 29 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.17 1.48 6.36 -2.91 -0.02 1.46 16 34 H 0.41 6.57 6.46 -92.71 -0.60 5.97 16 35 H 0.07 1.80 8.11 -2.39 -0.02 1.78 16 36 H 0.07 1.70 7.78 -2.39 -0.02 1.68 16 37 H 0.11 3.46 7.73 -2.91 -0.02 3.44 16 38 H 0.02 0.79 8.14 -2.38 -0.02 0.78 16 39 H 0.06 2.96 6.39 -2.39 -0.02 2.94 16 40 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.06 2.12 7.96 -2.39 -0.02 2.10 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.15 2.32 7.63 -2.91 -0.02 2.29 16 Total: -1.00 -73.81 377.04 2.72 -71.09 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.43 Total: 10.30 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.32 Total: 5.45 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -6.00 Total: -116.61 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.06 Total: -16.57 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -73.81 2.72 -71.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001405451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.437 kcal (2) G-P(sol) polarization free energy of solvation -73.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds