Wall clock time and date at job start Wed Apr 1 2020 01:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40249 * 126.66327 * 2 1 4 4 N 1.28658 * 109.42377 * 179.97438 * 3 2 1 5 5 C 1.35397 * 110.10597 * 359.76640 * 4 3 2 6 6 C 1.40121 * 133.02814 * 179.53554 * 5 4 3 7 7 C 1.37603 * 120.14989 * 180.36966 * 6 5 4 8 8 C 1.38485 * 120.80351 * 0.30546 * 7 6 5 9 9 C 1.39211 * 120.27332 * 359.97214 * 8 7 6 10 10 C 1.47526 * 120.24843 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00744 * 142.13087 * 10 9 8 12 12 N 1.34786 * 119.99995 * 322.13973 * 10 9 8 13 13 C 1.46495 * 120.00168 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47061 * 179.97438 * 13 12 10 15 15 C 1.29453 * 117.69886 * 94.99850 * 14 13 12 16 16 C 1.50314 * 123.65524 * 180.85977 * 15 14 13 17 17 N 1.47016 * 109.16544 * 349.01857 * 16 15 14 18 18 C 1.36932 * 121.37513 * 222.96767 * 17 16 15 19 19 H 1.08005 * 119.99560 * 150.99557 * 18 17 16 20 20 C 1.38808 * 120.00512 * 331.00382 * 18 17 16 21 21 N 1.31620 * 119.99446 * 349.18009 * 20 18 17 22 22 Si 1.86798 * 120.00173 * 169.18177 * 20 18 17 23 23 H 1.48498 * 109.47018 * 89.99774 * 22 20 18 24 24 H 1.48501 * 109.47082 * 209.99765 * 22 20 18 25 25 H 1.48498 * 109.47135 * 329.99680 * 22 20 18 26 26 C 1.47338 * 117.24460 * 42.94831 * 17 16 15 27 27 C 1.49969 * 117.69178 * 274.73674 * 14 13 12 28 28 C 1.36971 * 126.66415 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47466 * 264.13406 * 1 2 3 30 30 H 1.09003 * 109.47349 * 24.13930 * 1 2 3 31 31 H 1.09008 * 109.46885 * 144.13556 * 1 2 3 32 32 H 1.07997 * 119.92699 * 0.65231 * 6 5 4 33 33 H 1.08004 * 119.59863 * 180.27580 * 7 6 5 34 34 H 1.07995 * 119.86692 * 179.97438 * 8 7 6 35 35 H 0.96998 * 119.99414 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.46844 * 299.99141 * 13 12 10 37 37 H 1.08994 * 109.47500 * 59.99629 * 13 12 10 38 38 H 1.08000 * 118.16761 * 0.88017 * 15 14 13 39 39 H 1.09000 * 109.52494 * 108.92307 * 16 15 14 40 40 H 1.09005 * 109.52401 * 229.11764 * 16 15 14 41 41 H 0.97010 * 119.99595 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.78070 * 57.81363 * 26 17 16 43 43 H 1.09001 * 109.77666 * 178.61641 * 26 17 16 44 44 H 1.08999 * 109.31617 * 281.29200 * 27 14 13 45 45 H 1.09001 * 109.31693 * 40.71683 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1250 0.0000 4 7 3.5312 0.7437 0.0005 5 6 3.5990 -0.6085 0.0061 6 6 4.6698 -1.5123 0.0007 7 6 4.4305 -2.8673 0.0013 8 6 3.1358 -3.3589 0.0010 9 6 2.0530 -2.4840 0.0006 10 6 0.6740 -3.0082 0.0008 11 8 -0.1898 -2.4471 0.6469 12 7 0.3715 -4.1095 -0.7151 13 6 -0.9977 -4.6304 -0.7145 14 6 -1.0687 -5.8574 -1.5865 15 6 -0.9447 -7.0113 -1.0129 16 6 -0.9759 -8.3181 -1.7550 17 7 -1.4238 -8.0791 -3.1348 18 6 -2.3251 -8.9094 -3.7457 19 1 -2.9849 -8.5225 -4.5083 20 6 -2.3911 -10.2481 -3.3848 21 7 -1.4567 -10.7698 -2.6186 22 14 -3.8058 -11.3091 -3.9866 23 1 -3.4396 -11.9333 -5.2833 24 1 -4.0875 -12.3714 -2.9879 25 1 -5.0149 -10.4661 -4.1669 26 6 -0.8630 -6.9090 -3.8328 27 6 -1.2840 -5.6558 -3.0569 28 6 2.2829 -1.0987 0.0005 29 1 -0.3634 -0.1050 1.0223 30 1 -0.3634 0.9378 -0.4203 31 1 -0.3633 -0.8329 -0.6021 32 1 5.6852 -1.1445 0.0006 33 1 5.2625 -3.5560 0.0016 34 1 2.9654 -4.4253 0.0011 35 1 1.0605 -4.5570 -1.2307 36 1 -1.2868 -4.8907 0.3037 37 1 -1.6759 -3.8701 -1.1017 38 1 -0.8119 -7.0363 0.0586 39 1 0.0230 -8.7543 -1.7668 40 1 -1.6669 -9.0012 -1.2610 41 1 -1.5026 -11.7055 -2.3667 42 1 0.2242 -6.9822 -3.8608 43 1 -1.2563 -6.8619 -4.8483 44 1 -2.3382 -5.4500 -3.2421 45 1 -0.6891 -4.8076 -3.3955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001502490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:55 Heat of formation + Delta-G solvation = 122.133785 kcal Electronic energy + Delta-G solvation = -28794.404026 eV Core-core repulsion = 24815.080551 eV Total energy + Delta-G solvation = -3979.323475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.44795 -39.98449 -37.98473 -37.59006 -35.24449 -34.66658 -33.09595 -31.52458 -30.74576 -30.59427 -29.80799 -27.78598 -27.01560 -24.96988 -24.13461 -22.98012 -22.87261 -22.36890 -21.17533 -20.39813 -18.56425 -17.89465 -17.67169 -16.90157 -16.48316 -16.16337 -15.83270 -15.72003 -15.35323 -15.08136 -14.56607 -14.39305 -13.97053 -13.77568 -13.67948 -13.52938 -13.27700 -12.95826 -12.78685 -12.59245 -12.43404 -12.28589 -12.17028 -11.95916 -11.66232 -11.47989 -11.39182 -10.97373 -10.95265 -10.81730 -10.51223 -10.40749 -10.16004 -9.93649 -9.69603 -9.28800 -9.18811 -8.76326 -8.65971 -8.19190 -6.75932 -5.88166 -3.32392 -0.09391 0.86762 1.66028 1.82952 2.40172 2.52528 3.20864 3.30592 3.32325 3.39277 3.40992 3.71646 4.17230 4.27748 4.36485 4.41905 4.50694 4.73218 4.92265 5.02597 5.03899 5.17128 5.22191 5.32960 5.34235 5.43686 5.47358 5.52433 5.67657 5.75909 5.79268 5.84794 5.96552 6.05069 6.12337 6.22559 6.24096 6.27321 6.40964 6.64879 6.78072 7.05086 7.13452 7.20498 7.33499 7.63895 7.66988 7.73049 7.92897 8.33059 9.12084 9.73038 10.33202 11.22294 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.002193 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.093976 B =12762.760605 C =13296.870587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.381 5.381 3 N -0.009 5.009 4 N -0.219 5.219 5 C -0.027 4.027 6 C -0.011 4.011 7 C -0.141 4.141 8 C -0.030 4.030 9 C -0.135 4.135 10 C 0.555 3.445 11 O -0.541 6.541 12 N -0.708 5.708 13 C 0.157 3.843 14 C -0.169 4.169 15 C -0.121 4.121 16 C 0.195 3.805 17 N -0.594 5.594 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.909 5.909 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.144 3.856 27 C -0.090 4.090 28 C 0.127 3.873 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.404 0.596 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.255 0.745 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.015 16.471 5.641 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.174 5.174 3 N 0.011 4.989 4 N -0.098 5.098 5 C -0.152 4.152 6 C -0.033 4.033 7 C -0.163 4.163 8 C -0.053 4.053 9 C -0.142 4.142 10 C 0.341 3.659 11 O -0.421 6.421 12 N -0.358 5.358 13 C 0.035 3.965 14 C -0.170 4.170 15 C -0.141 4.141 16 C 0.070 3.930 17 N -0.317 5.317 18 C -0.379 4.379 19 H 0.084 0.916 20 C -0.195 4.195 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.129 4.129 28 C 0.003 3.997 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.279 18.253 6.135 21.376 hybrid contribution -0.669 -1.872 -0.359 2.020 sum 8.610 16.381 5.777 19.386 Atomic orbital electron populations 1.22287 0.71561 1.04358 1.05324 1.50123 1.08455 1.03019 1.55767 1.81654 0.94016 1.07728 1.15492 1.74862 1.11487 1.10170 1.13233 1.19921 0.92940 0.90364 1.11933 1.20648 0.97666 0.91401 0.93571 1.20963 0.97106 0.94791 1.03396 1.21432 0.91330 0.99769 0.92724 1.18890 0.94564 0.89451 1.11325 1.18082 0.87266 0.80728 0.79795 1.90784 1.49327 1.58852 1.43103 1.46190 1.12912 1.27935 1.48756 1.20532 0.81759 0.94797 0.99443 1.20474 1.07639 0.93003 0.95851 1.23330 0.94550 0.97125 0.99130 1.19738 0.99256 0.89786 0.84231 1.44065 1.49983 1.28244 1.09450 1.19128 1.10507 0.88858 1.19436 0.91606 1.25129 0.97894 0.96478 1.00013 1.69965 1.32717 1.12910 1.39781 0.86246 0.82015 0.80123 0.78085 1.21309 1.21534 1.20465 1.20998 0.95648 0.86795 0.94844 1.20792 1.00895 0.99189 0.92062 1.18964 0.91064 0.89198 1.00445 0.89045 0.89285 0.88457 0.83877 0.83625 0.83645 0.76068 0.91275 0.91390 0.88736 0.93873 0.89268 0.93516 0.95856 0.92437 0.91725 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.06 9.66 59.85 0.58 1.64 16 2 N -0.38 -4.71 4.10 -65.27 -0.27 -4.98 16 3 N -0.01 -0.12 13.72 60.35 0.83 0.71 16 4 N -0.22 -2.88 12.40 32.15 0.40 -2.48 16 5 C -0.03 -0.31 7.26 -84.76 -0.62 -0.93 16 6 C -0.01 -0.08 10.09 -39.11 -0.39 -0.48 16 7 C -0.14 -0.91 9.98 -39.72 -0.40 -1.30 16 8 C -0.03 -0.23 9.32 -39.13 -0.36 -0.60 16 9 C -0.13 -1.43 5.78 -104.93 -0.61 -2.04 16 10 C 0.55 6.60 6.74 -12.47 -0.08 6.52 16 11 O -0.54 -7.68 13.03 5.28 0.07 -7.61 16 12 N -0.71 -7.80 5.46 -62.54 -0.34 -8.14 16 13 C 0.16 2.02 5.66 -5.20 -0.03 1.99 16 14 C -0.17 -2.58 5.22 -100.99 -0.53 -3.11 16 15 C -0.12 -2.07 9.47 -35.78 -0.34 -2.41 16 16 C 0.19 4.30 5.16 -5.10 -0.03 4.27 16 17 N -0.59 -14.05 2.99 -173.56 -0.52 -14.57 16 18 C -0.25 -6.58 9.68 -15.06 -0.15 -6.72 16 19 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 20 C 0.00 0.09 5.08 -17.43 -0.09 0.00 16 21 N -0.91 -25.22 11.17 55.49 0.62 -24.60 16 22 Si 0.91 21.03 29.57 -169.99 -5.03 16.01 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.14 2.77 6.59 -3.44 -0.02 2.75 16 27 C -0.09 -1.43 5.95 -28.09 -0.17 -1.60 16 28 C 0.13 1.54 6.80 -83.92 -0.57 0.97 16 29 H 0.09 0.94 7.69 -51.93 -0.40 0.54 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.04 5.98 -51.92 -0.31 0.72 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 34 H 0.15 0.82 7.72 -52.49 -0.41 0.41 16 35 H 0.40 3.85 7.77 -40.82 -0.32 3.53 16 36 H 0.07 0.92 7.78 -51.93 -0.40 0.52 16 37 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 38 H 0.09 1.44 7.73 -52.49 -0.41 1.03 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.09 2.22 6.65 -51.93 -0.35 1.88 16 41 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -31.51 372.59 -8.35 -39.86 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.93 Total: 1.24 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.80 Total: -1.05 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.72 Total: -54.06 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.07 Total: -7.61 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.51 -8.35 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001502490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.999 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds