Wall clock time and date at job start Wed Apr 1 2020 01:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40249 * 126.66327 * 2 1 4 4 N 1.28658 * 109.42377 * 179.97438 * 3 2 1 5 5 C 1.35397 * 110.10597 * 359.76640 * 4 3 2 6 6 C 1.40121 * 133.02814 * 179.53554 * 5 4 3 7 7 C 1.37603 * 120.14989 * 180.36966 * 6 5 4 8 8 C 1.38485 * 120.80351 * 0.30546 * 7 6 5 9 9 C 1.39211 * 120.27332 * 359.97214 * 8 7 6 10 10 C 1.47526 * 120.24843 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00744 * 142.13087 * 10 9 8 12 12 N 1.34786 * 119.99995 * 322.13973 * 10 9 8 13 13 C 1.46495 * 120.00168 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47061 * 179.97438 * 13 12 10 15 15 C 1.29453 * 117.69886 * 94.99850 * 14 13 12 16 16 C 1.50314 * 123.65524 * 180.85977 * 15 14 13 17 17 N 1.47016 * 109.16544 * 349.01857 * 16 15 14 18 18 C 1.36932 * 121.37513 * 222.96767 * 17 16 15 19 19 H 1.08005 * 119.99560 * 150.99557 * 18 17 16 20 20 C 1.38808 * 120.00512 * 331.00382 * 18 17 16 21 21 N 1.31620 * 119.99446 * 349.18009 * 20 18 17 22 22 Si 1.86798 * 120.00173 * 169.18177 * 20 18 17 23 23 H 1.48498 * 109.47018 * 89.99774 * 22 20 18 24 24 H 1.48501 * 109.47082 * 209.99765 * 22 20 18 25 25 H 1.48498 * 109.47135 * 329.99680 * 22 20 18 26 26 C 1.47338 * 117.24460 * 42.94831 * 17 16 15 27 27 C 1.49969 * 117.69178 * 274.73674 * 14 13 12 28 28 C 1.36971 * 126.66415 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47466 * 264.13406 * 1 2 3 30 30 H 1.09003 * 109.47349 * 24.13930 * 1 2 3 31 31 H 1.09008 * 109.46885 * 144.13556 * 1 2 3 32 32 H 1.07997 * 119.92699 * 0.65231 * 6 5 4 33 33 H 1.08004 * 119.59863 * 180.27580 * 7 6 5 34 34 H 1.07995 * 119.86692 * 179.97438 * 8 7 6 35 35 H 0.96998 * 119.99414 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.46844 * 299.99141 * 13 12 10 37 37 H 1.08994 * 109.47500 * 59.99629 * 13 12 10 38 38 H 1.08000 * 118.16761 * 0.88017 * 15 14 13 39 39 H 1.09000 * 109.52494 * 108.92307 * 16 15 14 40 40 H 1.09005 * 109.52401 * 229.11764 * 16 15 14 41 41 H 0.97010 * 119.99595 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.78070 * 57.81363 * 26 17 16 43 43 H 1.09001 * 109.77666 * 178.61641 * 26 17 16 44 44 H 1.08999 * 109.31617 * 281.29200 * 27 14 13 45 45 H 1.09001 * 109.31693 * 40.71683 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1250 0.0000 4 7 3.5312 0.7437 0.0005 5 6 3.5990 -0.6085 0.0061 6 6 4.6698 -1.5123 0.0007 7 6 4.4305 -2.8673 0.0013 8 6 3.1358 -3.3589 0.0010 9 6 2.0530 -2.4840 0.0006 10 6 0.6740 -3.0082 0.0008 11 8 -0.1898 -2.4471 0.6469 12 7 0.3715 -4.1095 -0.7151 13 6 -0.9977 -4.6304 -0.7145 14 6 -1.0687 -5.8574 -1.5865 15 6 -0.9447 -7.0113 -1.0129 16 6 -0.9759 -8.3181 -1.7550 17 7 -1.4238 -8.0791 -3.1348 18 6 -2.3251 -8.9094 -3.7457 19 1 -2.9849 -8.5225 -4.5083 20 6 -2.3911 -10.2481 -3.3848 21 7 -1.4567 -10.7698 -2.6186 22 14 -3.8058 -11.3091 -3.9866 23 1 -3.4396 -11.9333 -5.2833 24 1 -4.0875 -12.3714 -2.9879 25 1 -5.0149 -10.4661 -4.1669 26 6 -0.8630 -6.9090 -3.8328 27 6 -1.2840 -5.6558 -3.0569 28 6 2.2829 -1.0987 0.0005 29 1 -0.3634 -0.1050 1.0223 30 1 -0.3634 0.9378 -0.4203 31 1 -0.3633 -0.8329 -0.6021 32 1 5.6852 -1.1445 0.0006 33 1 5.2625 -3.5560 0.0016 34 1 2.9654 -4.4253 0.0011 35 1 1.0605 -4.5570 -1.2307 36 1 -1.2868 -4.8907 0.3037 37 1 -1.6759 -3.8701 -1.1017 38 1 -0.8119 -7.0363 0.0586 39 1 0.0230 -8.7543 -1.7668 40 1 -1.6669 -9.0012 -1.2610 41 1 -1.5026 -11.7055 -2.3667 42 1 0.2242 -6.9822 -3.8608 43 1 -1.2563 -6.8619 -4.8483 44 1 -2.3382 -5.4500 -3.2421 45 1 -0.6891 -4.8076 -3.3955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001502490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:54 Heat of formation + Delta-G solvation = 101.490255 kcal Electronic energy + Delta-G solvation = -28795.299197 eV Core-core repulsion = 24815.080551 eV Total energy + Delta-G solvation = -3980.218646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.24760 -40.92725 -39.35483 -38.36482 -36.50017 -35.55297 -34.58671 -32.82491 -31.84754 -31.39690 -31.32279 -28.76083 -28.29596 -26.19865 -25.26481 -24.38228 -23.69363 -23.40805 -22.65965 -21.25801 -19.56449 -19.25948 -18.64610 -17.78174 -17.41221 -17.26564 -17.08725 -16.83136 -16.59420 -16.09724 -15.73878 -15.52119 -15.27180 -15.14746 -14.95126 -14.53824 -14.47110 -13.95293 -13.88549 -13.64105 -13.50783 -13.25759 -13.20014 -13.02658 -12.93969 -12.77185 -12.67350 -12.59258 -12.27774 -12.23061 -12.09221 -11.73997 -11.72249 -11.26475 -11.07089 -10.68290 -10.15860 -10.02666 -9.64879 -9.38877 -8.66132 -7.88250 -5.34417 -0.81660 0.14455 0.85158 1.05115 1.17542 1.47174 1.48674 1.57343 1.66674 2.27316 2.50956 2.55819 2.97276 3.30201 3.43015 3.51646 3.64381 3.68905 3.79793 3.89688 3.99383 4.12956 4.26307 4.31073 4.45837 4.55489 4.56174 4.62012 4.65490 4.73059 4.77930 4.82733 4.86092 4.94640 5.12671 5.15478 5.23834 5.24120 5.29829 5.41040 5.43334 5.51426 5.62921 5.63354 5.78303 6.18761 6.37562 6.43971 6.81538 7.05589 7.15950 7.84392 8.39505 9.19812 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.002193 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.093976 B =12762.760605 C =13296.870587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.387 5.387 3 N -0.037 5.037 4 N -0.236 5.236 5 C -0.047 4.047 6 C -0.008 4.008 7 C -0.127 4.127 8 C -0.013 4.013 9 C -0.157 4.157 10 C 0.559 3.441 11 O -0.568 6.568 12 N -0.699 5.699 13 C 0.169 3.831 14 C -0.140 4.140 15 C -0.137 4.137 16 C 0.205 3.795 17 N -0.615 5.615 18 C -0.259 4.259 19 H 0.065 0.935 20 C -0.049 4.049 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.272 1.272 26 C 0.138 3.862 27 C -0.084 4.084 28 C 0.109 3.891 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.187 0.813 34 H 0.172 0.828 35 H 0.414 0.586 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.018 0.982 40 H 0.051 0.949 41 H 0.250 0.750 42 H 0.030 0.970 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.217 16.949 5.473 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.181 5.181 3 N -0.017 5.017 4 N -0.114 5.114 5 C -0.172 4.172 6 C -0.030 4.030 7 C -0.148 4.148 8 C -0.035 4.035 9 C -0.165 4.165 10 C 0.347 3.653 11 O -0.449 6.449 12 N -0.349 5.349 13 C 0.046 3.954 14 C -0.141 4.141 15 C -0.158 4.158 16 C 0.080 3.920 17 N -0.339 5.339 18 C -0.389 4.389 19 H 0.083 0.917 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.794 3.206 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.197 1.197 26 C 0.013 3.987 27 C -0.123 4.123 28 C -0.015 4.015 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.187 0.813 33 H 0.204 0.796 34 H 0.189 0.811 35 H 0.251 0.749 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.497 18.769 5.949 22.312 hybrid contribution -0.948 -2.024 -0.355 2.263 sum 9.549 16.744 5.594 20.071 Atomic orbital electron populations 1.22304 0.70916 1.05099 1.04963 1.50278 1.08947 1.03105 1.55782 1.81578 0.94380 1.08427 1.17280 1.74782 1.11625 1.11409 1.13595 1.20416 0.93949 0.90102 1.12771 1.21106 0.98004 0.91626 0.92294 1.21437 0.97701 0.94639 1.00978 1.21873 0.91079 1.00645 0.89861 1.18870 0.94556 0.89163 1.13910 1.18238 0.87626 0.80346 0.79138 1.90777 1.50302 1.59600 1.44225 1.45963 1.12327 1.27837 1.48818 1.20287 0.82938 0.93486 0.98714 1.20562 1.04378 0.93350 0.95823 1.22969 0.97677 0.95254 0.99852 1.19388 0.96795 0.91728 0.84049 1.44349 1.50083 1.29057 1.10434 1.19433 1.10909 0.89474 1.19104 0.91687 1.25830 1.00129 0.97713 1.00755 1.70120 1.34302 1.12747 1.41146 0.85300 0.79603 0.78395 0.77297 1.21105 1.21956 1.19730 1.21178 0.95832 0.86602 0.95063 1.20717 1.01250 0.98433 0.91901 1.19328 0.91394 0.89763 1.01059 0.89648 0.87463 0.88989 0.81326 0.79577 0.81083 0.74892 0.91360 0.90962 0.86593 0.96453 0.93079 0.94074 0.95209 0.92643 0.92019 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.16 9.66 127.77 1.23 3.39 16 2 N -0.39 -9.57 4.10 -360.41 -1.48 -11.05 16 3 N -0.04 -1.01 13.72 37.02 0.51 -0.50 16 4 N -0.24 -6.19 12.40 -52.19 -0.65 -6.84 16 5 C -0.05 -1.03 7.26 39.59 0.29 -0.74 16 6 C -0.01 -0.11 10.09 22.58 0.23 0.12 16 7 C -0.13 -1.05 9.98 22.18 0.22 -0.83 16 8 C -0.01 -0.15 9.32 22.56 0.21 0.07 16 9 C -0.16 -2.99 5.78 -20.06 -0.12 -3.11 16 10 C 0.56 12.14 6.74 86.69 0.58 12.73 16 11 O -0.57 -15.45 13.03 -4.01 -0.05 -15.50 16 12 N -0.70 -13.31 5.46 -470.02 -2.57 -15.88 16 13 C 0.17 3.86 5.66 85.63 0.48 4.35 16 14 C -0.14 -3.95 5.22 -15.14 -0.08 -4.03 16 15 C -0.14 -4.55 9.47 27.10 0.26 -4.29 16 16 C 0.21 9.24 5.16 85.41 0.44 9.68 16 17 N -0.62 -29.22 2.99 -703.02 -2.10 -31.32 16 18 C -0.26 -13.77 9.68 84.03 0.81 -12.95 16 19 H 0.07 3.38 7.85 -2.91 -0.02 3.36 16 20 C -0.05 -2.65 5.08 84.86 0.43 -2.22 16 21 N -0.94 -53.43 11.17 21.65 0.24 -53.19 16 22 Si 0.97 43.75 29.57 68.60 2.03 45.78 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C 0.14 5.16 6.59 86.31 0.57 5.73 16 27 C -0.08 -2.46 5.95 29.71 0.18 -2.28 16 28 C 0.11 2.52 6.80 39.41 0.27 2.79 16 29 H 0.09 1.78 7.69 -2.39 -0.02 1.77 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.93 5.98 -2.38 -0.01 1.92 16 32 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 34 H 0.17 1.08 7.72 -2.91 -0.02 1.06 16 35 H 0.41 6.34 7.77 -92.71 -0.72 5.62 16 36 H 0.07 1.65 7.78 -2.39 -0.02 1.63 16 37 H 0.07 1.67 8.11 -2.39 -0.02 1.65 16 38 H 0.12 3.34 7.73 -2.91 -0.02 3.31 16 39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 2.65 6.65 -2.38 -0.02 2.63 16 41 H 0.25 13.87 8.31 -92.70 -0.77 13.09 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 43 H 0.05 2.05 7.96 -2.39 -0.02 2.03 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -71.44 372.59 2.26 -69.18 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.31 Total: 10.91 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.01 Total: 8.40 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -6.04 Total: -118.77 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.05 Total: -15.50 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.44 2.26 -69.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001502490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.671 kcal (2) G-P(sol) polarization free energy of solvation -71.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds