Wall clock time and date at job start Wed Apr 1 2020 01:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40233 * 126.65570 * 2 1 4 4 N 1.28641 * 109.50803 * 180.02562 * 3 2 1 5 5 C 1.35437 * 110.13007 * 359.97438 * 4 3 2 6 6 C 1.39798 * 133.04366 * 180.02562 * 5 4 3 7 7 C 1.38875 * 119.55921 * 180.02562 * 6 5 4 8 8 C 1.47715 * 119.86108 * 179.97438 * 7 6 5 9 9 O 1.21568 * 120.00493 * 315.90081 * 8 7 6 10 10 N 1.34781 * 120.00197 * 135.90385 * 8 7 6 11 11 C 1.47154 * 120.71554 * 184.22145 * 10 8 7 12 12 C 1.53876 * 108.03312 * 132.74765 * 11 10 8 13 13 H 1.09001 * 112.58291 * 182.22592 * 12 11 10 14 14 C 1.54134 * 107.71492 * 306.32805 * 12 11 10 15 15 C 1.54282 * 104.88776 * 89.40700 * 14 12 11 16 16 C 1.54543 * 104.84991 * 359.81268 * 15 14 12 17 17 H 1.08996 * 112.18062 * 146.40959 * 16 15 14 18 18 C 1.49249 * 120.76213 * 4.30113 * 10 8 7 19 19 N 1.48304 * 104.35856 * 24.70150 * 16 15 14 20 20 C 1.36934 * 128.07708 * 139.07878 * 19 16 15 21 21 H 1.08001 * 120.00124 * 345.05457 * 20 19 16 22 22 C 1.38820 * 119.99876 * 165.04700 * 20 19 16 23 23 N 1.31616 * 120.00179 * 350.17095 * 22 20 19 24 24 Si 1.86800 * 119.99856 * 170.16633 * 22 20 19 25 25 H 1.48497 * 109.47089 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47233 * 300.00335 * 24 22 20 27 27 H 1.48504 * 109.47275 * 60.00091 * 24 22 20 28 28 C 1.40257 * 120.27403 * 0.25412 * 7 6 5 29 29 C 1.36264 * 120.45165 * 359.44481 * 28 7 6 30 30 C 1.37265 * 126.65890 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47254 * 269.97982 * 1 2 3 32 32 H 1.09002 * 109.47120 * 29.98170 * 1 2 3 33 33 H 1.08998 * 109.46546 * 149.97811 * 1 2 3 34 34 H 1.08004 * 120.21449 * 0.02562 * 6 5 4 35 35 H 1.09002 * 109.74877 * 13.11241 * 11 10 8 36 36 H 1.09001 * 109.75159 * 252.38695 * 11 10 8 37 37 H 1.09002 * 110.50067 * 330.47243 * 14 12 11 38 38 H 1.08997 * 110.28123 * 208.23133 * 14 12 11 39 39 H 1.08995 * 110.36165 * 240.96692 * 15 14 12 40 40 H 1.09002 * 110.36133 * 118.65745 * 15 14 12 41 41 H 1.09001 * 110.51745 * 107.83037 * 18 10 8 42 42 H 1.09000 * 109.75132 * 346.59616 * 18 10 8 43 43 H 0.96995 * 120.00029 * 180.02562 * 23 22 20 44 44 H 1.08003 * 119.77130 * 179.74059 * 28 7 6 45 45 H 1.08005 * 119.92660 * 180.25930 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1250 0.0000 4 7 3.5314 0.7457 -0.0005 5 6 3.6019 -0.6068 -0.0004 6 6 4.6719 -1.5066 -0.0003 7 6 4.4187 -2.8720 -0.0006 8 6 5.5443 -3.8287 -0.0011 9 8 6.4970 -3.6461 -0.7339 10 7 5.5150 -4.9041 0.8108 11 6 6.6666 -5.8167 0.8911 12 6 6.9651 -6.0773 2.3780 13 1 7.8347 -6.7180 2.5244 14 6 7.1291 -4.7099 3.0701 15 6 5.7079 -4.3264 3.5322 16 6 4.8120 -5.4983 3.0715 17 1 3.9898 -5.6841 3.7625 18 6 4.3139 -5.1970 1.6469 19 7 5.7371 -6.6537 2.9776 20 6 5.5121 -7.9490 3.3606 21 1 4.6761 -8.1849 4.0023 22 6 6.3585 -8.9589 2.9238 23 7 7.2555 -8.7094 1.9936 24 14 6.2243 -10.6720 3.6564 25 1 7.2329 -11.5606 3.0254 26 1 6.4702 -10.6054 5.1194 27 1 4.8634 -11.2117 3.4074 28 6 3.0989 -3.3465 -0.0064 29 6 2.0516 -2.4747 -0.0004 30 6 2.2846 -1.1011 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3632 -0.8898 -0.5142 34 1 5.6885 -1.1420 0.0000 35 1 7.5339 -5.3581 0.4162 36 1 6.4274 -6.7564 0.3932 37 1 7.5121 -3.9699 2.3673 38 1 7.7960 -4.7981 3.9278 39 1 5.3922 -3.3979 3.0567 40 1 5.6756 -4.2280 4.6173 41 1 3.7765 -6.0602 1.2544 42 1 3.6556 -4.3284 1.6629 43 1 7.8467 -9.4151 1.6882 44 1 2.9113 -4.4101 -0.0109 45 1 1.0386 -2.8494 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029361512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:24 Heat of formation + Delta-G solvation = 133.653725 kcal Electronic energy + Delta-G solvation = -30339.330999 eV Core-core repulsion = 26360.507066 eV Total energy + Delta-G solvation = -3978.823933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27133 -40.20319 -38.23359 -37.01639 -34.95240 -33.76353 -32.41401 -31.17031 -30.95551 -30.10661 -29.26994 -27.84830 -26.40313 -24.74012 -24.04160 -23.44139 -22.93331 -21.40805 -20.26918 -19.67563 -18.83329 -18.21429 -17.53635 -16.73498 -16.35898 -15.96088 -15.73634 -15.35051 -14.85037 -14.67351 -14.45088 -13.97046 -13.81599 -13.79835 -13.52685 -13.26925 -13.10128 -12.82603 -12.53136 -12.49523 -12.25700 -12.01560 -11.82678 -11.66350 -11.54656 -11.07806 -10.99242 -10.91657 -10.89499 -10.83684 -10.37885 -10.09984 -9.90301 -9.74689 -9.59888 -9.45635 -8.98564 -8.82429 -8.54081 -8.11030 -6.89335 -5.88597 -3.24026 0.25969 0.84393 1.80973 1.97926 2.92886 3.31273 3.32855 3.38826 3.39665 3.63620 3.90372 4.08515 4.34483 4.37987 4.54574 4.66877 4.75757 4.90242 4.92524 5.02232 5.10074 5.24924 5.28373 5.53982 5.62282 5.64102 5.71649 5.75159 5.79061 5.88573 5.92490 6.08171 6.14738 6.21815 6.27939 6.34404 6.41180 6.50441 6.59708 6.66778 6.76640 6.82675 6.91783 7.26281 7.45071 7.65028 7.76155 7.95840 8.09261 8.58192 9.00777 9.63238 10.39532 11.24354 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.003001 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.390788 B = 9327.926322 C = 9769.017269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.401 5.401 3 N -0.014 5.014 4 N -0.210 5.210 5 C -0.024 4.024 6 C 0.020 3.980 7 C -0.130 4.130 8 C 0.552 3.448 9 O -0.549 6.549 10 N -0.584 5.584 11 C 0.113 3.887 12 C 0.169 3.831 13 H 0.118 0.882 14 C -0.137 4.137 15 C -0.123 4.123 16 C 0.133 3.867 17 H 0.078 0.922 18 C 0.085 3.915 19 N -0.583 5.583 20 C -0.230 4.230 21 H 0.076 0.924 22 C -0.001 4.001 23 N -0.911 5.911 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.285 1.285 28 C -0.038 4.038 29 C -0.131 4.131 30 C 0.100 3.900 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.256 0.744 44 H 0.148 0.852 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.372 12.792 -2.318 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.195 5.195 3 N 0.006 4.994 4 N -0.089 5.089 5 C -0.148 4.148 6 C -0.003 4.003 7 C -0.136 4.136 8 C 0.338 3.662 9 O -0.429 6.429 10 N -0.315 5.315 11 C -0.009 4.009 12 C 0.061 3.939 13 H 0.136 0.864 14 C -0.176 4.176 15 C -0.162 4.162 16 C 0.025 3.975 17 H 0.096 0.904 18 C -0.039 4.039 19 N -0.304 5.304 20 C -0.358 4.358 21 H 0.094 0.906 22 C -0.198 4.198 23 N -0.557 5.557 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.211 1.211 28 C -0.060 4.060 29 C -0.153 4.153 30 C -0.021 4.021 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.164 0.836 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.166 0.834 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.811 14.126 -2.704 19.261 hybrid contribution -0.499 -1.914 0.325 2.004 sum -13.310 12.212 -2.380 18.220 Atomic orbital electron populations 1.21995 0.72858 1.05160 1.04124 1.50067 1.07788 1.03539 1.58108 1.81607 0.94083 1.07615 1.16062 1.74847 1.11175 1.10540 1.12327 1.19744 0.93085 0.90041 1.11943 1.20430 0.98129 0.89785 0.92000 1.19825 0.94251 0.93432 1.06130 1.18018 0.85919 0.81337 0.80879 1.90769 1.35396 1.75697 1.41030 1.48661 1.17901 1.24625 1.40328 1.22486 0.86248 0.91894 1.00315 1.21796 0.92838 0.90591 0.88670 0.86421 1.22583 0.96044 0.99200 0.99796 1.22466 0.96613 0.97444 0.99649 1.21946 0.93743 0.89038 0.92816 0.90449 1.23284 0.86791 0.99858 0.93954 1.45159 1.09374 1.03759 1.72156 1.18933 1.12123 0.81148 1.23596 0.90642 1.24834 0.99495 0.97783 0.97734 1.69827 1.23491 1.32618 1.29755 0.86219 0.77221 0.83777 0.78587 1.21595 1.21186 1.21116 1.21148 0.90677 1.00658 0.93489 1.19676 1.00415 0.87927 1.07280 1.19446 0.90858 0.90531 1.01272 0.89936 0.88554 0.88964 0.83555 0.91174 0.89991 0.92786 0.92806 0.92947 0.92639 0.90944 0.90712 0.93348 0.83400 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.49 11.52 59.85 0.69 1.18 16 2 N -0.40 -4.12 4.11 -65.43 -0.27 -4.39 16 3 N -0.01 -0.18 13.72 60.35 0.83 0.65 16 4 N -0.21 -3.06 12.40 32.15 0.40 -2.66 16 5 C -0.02 -0.34 7.26 -84.76 -0.62 -0.95 16 6 C 0.02 0.27 9.72 -38.76 -0.38 -0.10 16 7 C -0.13 -1.83 5.19 -105.03 -0.55 -2.38 16 8 C 0.55 9.72 7.30 -12.39 -0.09 9.63 16 9 O -0.55 -11.50 16.45 5.31 0.09 -11.41 16 10 N -0.58 -10.48 2.28 -170.97 -0.39 -10.87 16 11 C 0.11 2.38 5.78 -3.23 -0.02 2.36 16 12 C 0.17 3.67 3.10 -65.88 -0.20 3.47 16 13 H 0.12 2.94 6.40 -51.93 -0.33 2.60 16 14 C -0.14 -2.57 6.16 -25.47 -0.16 -2.73 16 15 C -0.12 -2.07 6.19 -25.25 -0.16 -2.22 16 16 C 0.13 2.39 4.27 -65.66 -0.28 2.11 16 17 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 18 C 0.09 1.35 4.53 -2.05 -0.01 1.34 16 19 N -0.58 -13.12 2.80 -152.84 -0.43 -13.55 16 20 C -0.23 -5.75 10.37 -15.06 -0.16 -5.91 16 21 H 0.08 1.83 7.85 -52.49 -0.41 1.42 16 22 C 0.00 -0.02 5.41 -17.43 -0.09 -0.12 16 23 N -0.91 -24.28 10.42 55.49 0.58 -23.70 16 24 Si 0.91 20.60 29.56 -169.99 -5.03 15.57 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C -0.04 -0.42 7.24 -39.53 -0.29 -0.71 16 29 C -0.13 -1.24 9.97 -39.89 -0.40 -1.63 16 30 C 0.10 1.15 6.93 -84.10 -0.58 0.57 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.15 2.03 8.06 -52.48 -0.42 1.60 16 35 H 0.07 1.50 7.15 -51.93 -0.37 1.13 16 36 H 0.08 1.96 7.79 -51.93 -0.40 1.56 16 37 H 0.05 0.99 7.83 -51.93 -0.41 0.59 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.82 7.86 -51.93 -0.41 0.41 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.19 8.12 -51.93 -0.42 0.76 16 42 H 0.07 0.96 4.66 -51.93 -0.24 0.72 16 43 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 44 H 0.15 1.49 6.42 -52.48 -0.34 1.15 16 45 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -31.09 361.36 -7.91 -39.00 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.85 Total: 2.02 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -3.28 Total: 3.91 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.72 Total: -54.53 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.09 -7.91 -39.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029361512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.651 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds