Wall clock time and date at job start Wed Apr 1 2020 01:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40233 * 126.65570 * 2 1 4 4 N 1.28641 * 109.50803 * 180.02562 * 3 2 1 5 5 C 1.35437 * 110.13007 * 359.97438 * 4 3 2 6 6 C 1.39798 * 133.04366 * 180.02562 * 5 4 3 7 7 C 1.38875 * 119.55921 * 180.02562 * 6 5 4 8 8 C 1.47715 * 119.86108 * 179.97438 * 7 6 5 9 9 O 1.21568 * 120.00493 * 315.90081 * 8 7 6 10 10 N 1.34781 * 120.00197 * 135.90385 * 8 7 6 11 11 C 1.47154 * 120.71554 * 184.22145 * 10 8 7 12 12 C 1.53876 * 108.03312 * 132.74765 * 11 10 8 13 13 H 1.09001 * 112.58291 * 182.22592 * 12 11 10 14 14 C 1.54134 * 107.71492 * 306.32805 * 12 11 10 15 15 C 1.54282 * 104.88776 * 89.40700 * 14 12 11 16 16 C 1.54543 * 104.84991 * 359.81268 * 15 14 12 17 17 H 1.08996 * 112.18062 * 146.40959 * 16 15 14 18 18 C 1.49249 * 120.76213 * 4.30113 * 10 8 7 19 19 N 1.48304 * 104.35856 * 24.70150 * 16 15 14 20 20 C 1.36934 * 128.07708 * 139.07878 * 19 16 15 21 21 H 1.08001 * 120.00124 * 345.05457 * 20 19 16 22 22 C 1.38820 * 119.99876 * 165.04700 * 20 19 16 23 23 N 1.31616 * 120.00179 * 350.17095 * 22 20 19 24 24 Si 1.86800 * 119.99856 * 170.16633 * 22 20 19 25 25 H 1.48497 * 109.47089 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47233 * 300.00335 * 24 22 20 27 27 H 1.48504 * 109.47275 * 60.00091 * 24 22 20 28 28 C 1.40257 * 120.27403 * 0.25412 * 7 6 5 29 29 C 1.36264 * 120.45165 * 359.44481 * 28 7 6 30 30 C 1.37265 * 126.65890 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47254 * 269.97982 * 1 2 3 32 32 H 1.09002 * 109.47120 * 29.98170 * 1 2 3 33 33 H 1.08998 * 109.46546 * 149.97811 * 1 2 3 34 34 H 1.08004 * 120.21449 * 0.02562 * 6 5 4 35 35 H 1.09002 * 109.74877 * 13.11241 * 11 10 8 36 36 H 1.09001 * 109.75159 * 252.38695 * 11 10 8 37 37 H 1.09002 * 110.50067 * 330.47243 * 14 12 11 38 38 H 1.08997 * 110.28123 * 208.23133 * 14 12 11 39 39 H 1.08995 * 110.36165 * 240.96692 * 15 14 12 40 40 H 1.09002 * 110.36133 * 118.65745 * 15 14 12 41 41 H 1.09001 * 110.51745 * 107.83037 * 18 10 8 42 42 H 1.09000 * 109.75132 * 346.59616 * 18 10 8 43 43 H 0.96995 * 120.00029 * 180.02562 * 23 22 20 44 44 H 1.08003 * 119.77130 * 179.74059 * 28 7 6 45 45 H 1.08005 * 119.92660 * 180.25930 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1250 0.0000 4 7 3.5314 0.7457 -0.0005 5 6 3.6019 -0.6068 -0.0004 6 6 4.6719 -1.5066 -0.0003 7 6 4.4187 -2.8720 -0.0006 8 6 5.5443 -3.8287 -0.0011 9 8 6.4970 -3.6461 -0.7339 10 7 5.5150 -4.9041 0.8108 11 6 6.6666 -5.8167 0.8911 12 6 6.9651 -6.0773 2.3780 13 1 7.8347 -6.7180 2.5244 14 6 7.1291 -4.7099 3.0701 15 6 5.7079 -4.3264 3.5322 16 6 4.8120 -5.4983 3.0715 17 1 3.9898 -5.6841 3.7625 18 6 4.3139 -5.1970 1.6469 19 7 5.7371 -6.6537 2.9776 20 6 5.5121 -7.9490 3.3606 21 1 4.6761 -8.1849 4.0023 22 6 6.3585 -8.9589 2.9238 23 7 7.2555 -8.7094 1.9936 24 14 6.2243 -10.6720 3.6564 25 1 7.2329 -11.5606 3.0254 26 1 6.4702 -10.6054 5.1194 27 1 4.8634 -11.2117 3.4074 28 6 3.0989 -3.3465 -0.0064 29 6 2.0516 -2.4747 -0.0004 30 6 2.2846 -1.1011 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3632 -0.8898 -0.5142 34 1 5.6885 -1.1420 0.0000 35 1 7.5339 -5.3581 0.4162 36 1 6.4274 -6.7564 0.3932 37 1 7.5121 -3.9699 2.3673 38 1 7.7960 -4.7981 3.9278 39 1 5.3922 -3.3979 3.0567 40 1 5.6756 -4.2280 4.6173 41 1 3.7765 -6.0602 1.2544 42 1 3.6556 -4.3284 1.6629 43 1 7.8467 -9.4151 1.6882 44 1 2.9113 -4.4101 -0.0109 45 1 1.0386 -2.8494 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029361512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:23 Heat of formation + Delta-G solvation = 114.440338 kcal Electronic energy + Delta-G solvation = -30340.164154 eV Core-core repulsion = 26360.507066 eV Total energy + Delta-G solvation = -3979.657088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.17993 -41.62469 -39.62235 -38.17629 -35.72692 -35.36343 -34.13899 -32.55115 -31.84775 -31.33549 -30.92787 -28.51238 -27.88222 -26.03762 -25.61079 -24.68217 -24.09469 -22.22685 -21.62044 -21.21186 -20.39561 -19.41311 -18.49104 -18.12592 -17.26210 -17.17190 -17.10662 -16.79436 -16.43165 -16.00567 -15.48713 -15.32998 -15.12950 -14.71729 -14.65525 -14.41603 -14.35803 -13.89104 -13.73265 -13.55220 -13.50686 -13.39478 -13.20938 -13.02974 -12.79201 -12.72656 -12.64538 -12.48063 -11.99421 -11.90596 -11.80238 -11.68403 -11.47514 -11.43631 -11.11317 -10.96358 -10.62894 -9.95928 -9.76763 -9.37840 -8.67499 -7.81094 -5.16199 -0.65280 -0.13660 1.07308 1.11287 1.52342 1.54632 1.60105 1.66580 1.99819 2.51892 2.56235 2.96192 3.33347 3.39144 3.48090 3.52787 3.56713 3.87774 3.97332 4.10448 4.14912 4.25764 4.29671 4.35773 4.42279 4.45261 4.47914 4.64238 4.70223 4.74515 4.78729 4.87696 4.87901 5.00875 5.03804 5.09570 5.12493 5.15016 5.17085 5.28018 5.37821 5.42674 5.57166 5.61039 5.63340 5.85292 6.25866 6.54248 6.84410 7.09331 7.15734 7.77352 8.56045 9.30578 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.003001 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.390788 B = 9327.926322 C = 9769.017269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.384 5.384 3 N -0.028 5.028 4 N -0.245 5.245 5 C -0.042 4.042 6 C 0.008 3.992 7 C -0.133 4.133 8 C 0.553 3.447 9 O -0.591 6.591 10 N -0.585 5.585 11 C 0.130 3.870 12 C 0.167 3.833 13 H 0.078 0.922 14 C -0.130 4.130 15 C -0.113 4.113 16 C 0.127 3.873 17 H 0.098 0.902 18 C 0.092 3.908 19 N -0.603 5.603 20 C -0.230 4.230 21 H 0.084 0.916 22 C -0.055 4.055 23 N -0.938 5.938 24 Si 0.969 3.031 25 H -0.303 1.303 26 H -0.284 1.284 27 H -0.276 1.276 28 C -0.046 4.046 29 C -0.097 4.097 30 C 0.099 3.901 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.117 0.883 43 H 0.246 0.754 44 H 0.165 0.835 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.843 13.750 -1.460 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.179 5.179 3 N -0.008 5.008 4 N -0.123 5.123 5 C -0.167 4.167 6 C -0.015 4.015 7 C -0.140 4.140 8 C 0.343 3.657 9 O -0.473 6.473 10 N -0.315 5.315 11 C 0.006 3.994 12 C 0.059 3.941 13 H 0.096 0.904 14 C -0.169 4.169 15 C -0.151 4.151 16 C 0.020 3.980 17 H 0.116 0.884 18 C -0.031 4.031 19 N -0.324 5.324 20 C -0.358 4.358 21 H 0.102 0.898 22 C -0.250 4.250 23 N -0.585 5.585 24 Si 0.799 3.201 25 H -0.230 1.230 26 H -0.210 1.210 27 H -0.202 1.202 28 C -0.068 4.068 29 C -0.119 4.119 30 C -0.024 4.024 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.134 0.866 43 H 0.055 0.945 44 H 0.182 0.818 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.356 15.136 -1.822 23.101 hybrid contribution 0.770 -2.097 0.037 2.234 sum -16.586 13.040 -1.785 21.173 Atomic orbital electron populations 1.22575 0.69514 1.07353 1.06112 1.50491 1.09397 1.02353 1.55655 1.81520 0.94143 1.08935 1.16217 1.74837 1.12124 1.11308 1.14069 1.19865 0.94231 0.89966 1.12589 1.20283 0.97969 0.90042 0.93219 1.19490 0.94236 0.92280 1.07965 1.18547 0.86321 0.81236 0.79637 1.90745 1.37436 1.76543 1.42611 1.48623 1.17667 1.24291 1.40913 1.21963 0.87121 0.90889 0.99421 1.21587 0.91722 0.91403 0.89350 0.90432 1.22467 0.97829 0.97255 0.99397 1.22411 0.94520 0.97663 1.00548 1.22241 0.93777 0.87451 0.94500 0.88391 1.23359 0.86143 1.01679 0.91912 1.45323 1.10772 1.04173 1.72162 1.19277 1.11575 0.82297 1.22693 0.89787 1.25511 0.99982 1.00842 0.98634 1.70027 1.24453 1.32760 1.31297 0.85303 0.76940 0.80268 0.77616 1.22977 1.21006 1.20228 1.21261 0.89428 1.01809 0.94261 1.20078 1.02060 0.86287 1.03476 1.19709 0.90050 0.91644 1.01029 0.87937 0.87368 0.85934 0.84950 0.92681 0.93551 0.92906 0.92876 0.91120 0.91376 0.91079 0.86561 0.94484 0.81759 0.79685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.38 11.52 127.77 1.47 1.86 16 2 N -0.38 -6.43 4.11 -360.92 -1.48 -7.91 16 3 N -0.03 -0.68 13.72 37.02 0.51 -0.18 16 4 N -0.25 -6.98 12.40 -52.20 -0.65 -7.63 16 5 C -0.04 -1.09 7.26 39.57 0.29 -0.81 16 6 C 0.01 0.22 9.72 22.80 0.22 0.44 16 7 C -0.13 -3.54 5.19 -20.13 -0.10 -3.64 16 8 C 0.55 19.45 7.30 86.75 0.63 20.08 16 9 O -0.59 -25.66 16.45 -3.93 -0.06 -25.73 16 10 N -0.58 -20.81 2.28 -813.10 -1.86 -22.67 16 11 C 0.13 5.74 5.78 86.55 0.50 6.25 16 12 C 0.17 7.53 3.10 45.32 0.14 7.67 16 13 H 0.08 4.12 6.40 -2.39 -0.02 4.11 16 14 C -0.13 -4.90 6.16 31.41 0.19 -4.70 16 15 C -0.11 -3.53 6.19 31.55 0.20 -3.34 16 16 C 0.13 4.27 4.27 45.47 0.19 4.46 16 17 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 18 C 0.09 2.67 4.53 86.15 0.39 3.06 16 19 N -0.60 -26.96 2.80 -637.48 -1.79 -28.75 16 20 C -0.23 -11.43 10.37 84.04 0.87 -10.56 16 21 H 0.08 3.96 7.85 -2.91 -0.02 3.93 16 22 C -0.06 -2.89 5.41 84.86 0.46 -2.43 16 23 N -0.94 -52.26 10.42 21.65 0.23 -52.04 16 24 Si 0.97 42.95 29.56 68.60 2.03 44.98 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 28 C -0.05 -0.83 7.24 22.30 0.16 -0.67 16 29 C -0.10 -1.30 9.97 22.07 0.22 -1.08 16 30 C 0.10 1.88 6.93 39.16 0.27 2.15 16 31 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.05 2.53 7.15 -2.39 -0.02 2.52 16 36 H 0.05 2.35 7.79 -2.39 -0.02 2.34 16 37 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.07 1.99 7.86 -2.39 -0.02 1.97 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 42 H 0.12 2.46 4.66 -2.39 -0.01 2.45 16 43 H 0.25 13.68 8.31 -92.71 -0.77 12.90 16 44 H 0.17 2.52 6.42 -2.91 -0.02 2.50 16 45 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -72.66 361.36 4.06 -68.60 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.03 Total: 12.57 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 6.11 Total: 18.74 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -5.04 Total: -119.16 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -72.66 4.06 -68.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029361512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.042 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds