Wall clock time and date at job start Wed Apr 1 2020 01:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39796 * 125.34172 * 2 1 4 4 C 1.30204 * 110.13556 * 180.02562 * 3 2 1 5 5 C 1.45971 * 107.58193 * 359.97438 * 4 3 2 6 6 C 1.39660 * 134.11546 * 180.30650 * 5 4 3 7 7 C 1.39513 * 117.94551 * 180.15113 * 6 5 4 8 8 C 1.47682 * 120.40673 * 179.78533 * 7 6 5 9 9 O 1.21574 * 120.00423 * 326.77291 * 8 7 6 10 10 N 1.34777 * 120.00066 * 146.77197 * 8 7 6 11 11 C 1.47159 * 120.71115 * 184.02073 * 10 8 7 12 12 C 1.53892 * 108.03489 * 132.73704 * 11 10 8 13 13 H 1.09000 * 112.09795 * 181.91153 * 12 11 10 14 14 C 1.54550 * 108.36469 * 306.24842 * 12 11 10 15 15 C 1.54830 * 104.74066 * 89.17294 * 14 12 11 16 16 C 1.54544 * 104.74782 * 359.97438 * 15 14 12 17 17 H 1.08998 * 112.68487 * 146.81237 * 16 15 14 18 18 C 1.47162 * 120.70772 * 3.99407 * 10 8 7 19 19 N 1.48309 * 107.20655 * 58.35555 * 12 11 10 20 20 C 1.36929 * 128.07573 * 106.10054 * 19 12 11 21 21 H 1.08001 * 120.00360 * 165.09615 * 20 19 12 22 22 C 1.38814 * 120.00253 * 345.09738 * 20 19 12 23 23 N 1.31621 * 119.99800 * 350.72537 * 22 20 19 24 24 Si 1.86793 * 120.00346 * 170.72428 * 22 20 19 25 25 H 1.48504 * 109.47435 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47524 * 300.00425 * 24 22 20 27 27 H 1.48509 * 109.46906 * 60.00124 * 24 22 20 28 28 C 1.40184 * 119.18181 * 359.51295 * 7 6 5 29 29 N 1.31186 * 121.37267 * 0.25369 * 28 7 6 30 30 C 1.32929 * 121.85186 * 359.97438 * 29 28 7 31 31 H 1.09002 * 109.46964 * 269.95906 * 1 2 3 32 32 H 1.08999 * 109.46924 * 29.95461 * 1 2 3 33 33 H 1.08992 * 109.47452 * 149.95732 * 1 2 3 34 34 H 1.08001 * 126.20805 * 180.02562 * 4 3 2 35 35 H 1.07998 * 121.03082 * 359.92133 * 6 5 4 36 36 H 1.08998 * 109.75274 * 13.10056 * 11 10 8 37 37 H 1.09002 * 109.78979 * 252.39452 * 11 10 8 38 38 H 1.09000 * 110.36674 * 208.13671 * 14 12 11 39 39 H 1.09001 * 110.36402 * 330.45658 * 14 12 11 40 40 H 1.09005 * 110.30794 * 241.24677 * 15 14 12 41 41 H 1.08998 * 110.61555 * 118.91521 * 15 14 12 42 42 H 1.08997 * 109.74827 * 346.90451 * 18 10 8 43 43 H 1.09007 * 109.74916 * 107.63426 * 18 10 8 44 44 H 0.97000 * 120.00056 * 179.97438 * 23 22 20 45 45 H 1.08000 * 119.30723 * 180.27125 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2736 1.1403 0.0000 4 6 3.5301 0.7988 -0.0005 5 6 3.5906 -0.6596 -0.0003 6 6 4.6327 -1.5894 0.0047 7 6 4.3001 -2.9443 -0.0002 8 6 5.3588 -3.9739 -0.0001 9 8 6.4104 -3.7647 -0.5732 10 7 5.1594 -5.1455 0.6355 11 6 6.2344 -6.1468 0.7209 12 6 6.3187 -6.6323 2.1788 13 1 7.1208 -7.3558 2.3243 14 6 6.4736 -5.3974 3.0950 15 6 5.0233 -4.9711 3.4302 16 6 4.1316 -5.9890 2.6837 17 1 3.2072 -6.2089 3.2176 18 6 3.8620 -5.4506 1.2595 19 7 4.9906 -7.1890 2.5332 20 6 4.6382 -8.5039 2.6808 21 1 3.7110 -8.7629 3.1704 22 6 5.4726 -9.5042 2.2012 23 7 6.5061 -9.1939 1.4476 24 14 5.1288 -11.2906 2.6253 25 1 6.1580 -12.1560 1.9951 26 1 5.1689 -11.4660 4.0994 27 1 3.7856 -11.6701 2.1181 28 6 2.9485 -3.3163 0.0005 29 7 1.9928 -2.4176 0.0007 30 6 2.2552 -1.1145 0.0008 31 1 -0.3633 -0.0007 1.0277 32 1 -0.3633 0.8904 -0.5131 33 1 -0.3634 -0.8895 -0.5144 34 1 4.3743 1.4724 -0.0003 35 1 5.6642 -1.2695 0.0085 36 1 7.1823 -5.6955 0.4276 37 1 6.0085 -6.9877 0.0651 38 1 7.0129 -5.6645 4.0038 39 1 6.9911 -4.5961 2.5675 40 1 4.8321 -3.9615 3.0664 41 1 4.8455 -5.0264 4.5041 42 1 3.2593 -4.5443 1.3181 43 1 3.3385 -6.2044 0.6712 44 1 7.0895 -9.8928 1.1128 45 1 2.6887 -4.3646 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029526933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:28 Heat of formation + Delta-G solvation = 136.775513 kcal Electronic energy + Delta-G solvation = -30368.291633 eV Core-core repulsion = 26389.603071 eV Total energy + Delta-G solvation = -3978.688562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81386 -40.22676 -38.34442 -37.44543 -34.05936 -33.93439 -32.42738 -31.86552 -31.16135 -29.96014 -29.24094 -27.25431 -26.28515 -24.78015 -24.16460 -23.47118 -22.92010 -21.14050 -20.20603 -19.69964 -18.83752 -18.02902 -17.86396 -16.70447 -16.12806 -16.09340 -15.52225 -15.43062 -14.90417 -14.66243 -14.38991 -14.16331 -13.77580 -13.72795 -13.42716 -13.24227 -13.07312 -12.92948 -12.78403 -12.51588 -12.42425 -11.83719 -11.71505 -11.59162 -11.31677 -11.05876 -10.89085 -10.81390 -10.65894 -10.38510 -10.13477 -9.97725 -9.87289 -9.65260 -9.59507 -9.33428 -9.13785 -8.80855 -8.48028 -8.10501 -6.88056 -5.87521 -3.23223 0.56437 0.81006 1.88807 2.18828 3.02280 3.34097 3.39349 3.40614 3.42141 3.73877 3.92387 4.06534 4.38361 4.39057 4.59303 4.69986 4.87174 4.96417 5.05886 5.12585 5.21305 5.22616 5.28145 5.39334 5.52609 5.62596 5.69884 5.75708 5.84605 5.90852 5.96956 6.12752 6.21419 6.27711 6.35443 6.48793 6.52819 6.59489 6.65294 6.75901 6.83211 6.91984 7.15707 7.25843 7.45888 7.65635 7.66373 7.97826 8.10141 8.58145 9.01808 9.63989 10.40046 11.25142 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.003027 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.932955 B = 9248.686528 C = 9763.502993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.396 5.396 3 N -0.244 5.244 4 C 0.094 3.906 5 C -0.239 4.239 6 C 0.062 3.938 7 C -0.217 4.217 8 C 0.558 3.442 9 O -0.552 6.552 10 N -0.582 5.582 11 C 0.114 3.886 12 C 0.167 3.833 13 H 0.120 0.880 14 C -0.136 4.136 15 C -0.122 4.122 16 C 0.135 3.865 17 H 0.079 0.921 18 C 0.069 3.931 19 N -0.584 5.584 20 C -0.229 4.229 21 H 0.076 0.924 22 C -0.001 4.001 23 N -0.913 5.913 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.190 3.810 29 N -0.507 5.507 30 C 0.325 3.675 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.204 0.796 35 H 0.150 0.850 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.256 0.744 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 16.780 -1.224 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.186 5.186 3 N -0.056 5.056 4 C -0.104 4.104 5 C -0.249 4.249 6 C 0.034 3.966 7 C -0.224 4.224 8 C 0.345 3.655 9 O -0.432 6.432 10 N -0.312 5.312 11 C -0.009 4.009 12 C 0.059 3.941 13 H 0.137 0.863 14 C -0.175 4.175 15 C -0.161 4.161 16 C 0.026 3.974 17 H 0.097 0.903 18 C -0.057 4.057 19 N -0.305 5.305 20 C -0.357 4.357 21 H 0.094 0.906 22 C -0.199 4.199 23 N -0.558 5.558 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.211 1.211 28 C 0.021 3.979 29 N -0.221 5.221 30 C 0.086 3.914 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.220 0.780 35 H 0.168 0.832 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.951 17.373 -1.563 19.606 hybrid contribution 1.019 -1.334 0.159 1.686 sum -7.932 16.039 -1.403 17.948 Atomic orbital electron populations 1.21820 0.73341 1.04433 1.03325 1.48062 1.06316 1.00048 1.64187 1.76697 1.02735 1.07507 1.18680 1.25102 0.94835 0.92609 0.97894 1.20426 0.94090 0.94670 1.15671 1.21076 0.99025 0.89928 0.86613 1.20784 0.95402 0.94706 1.11531 1.17833 0.86356 0.81714 0.79568 1.90746 1.27614 1.79578 1.45311 1.48115 1.14808 1.16147 1.52123 1.22504 0.88148 0.89332 1.00916 1.21907 0.91176 0.91860 0.89122 0.86280 1.22720 0.95706 0.99077 0.99972 1.22531 0.96523 0.97631 0.99395 1.22107 0.94874 0.88492 0.91958 0.90269 1.23452 0.84798 0.99771 0.97641 1.45198 1.04375 1.00136 1.80748 1.18948 1.05738 0.79818 1.31210 0.90585 1.24835 0.98582 0.98009 0.98457 1.69817 1.17675 1.31939 1.36395 0.86207 0.77281 0.84338 0.77913 1.21605 1.21187 1.21095 1.23652 0.87022 0.99056 0.88139 1.66789 1.37290 0.98374 1.19685 1.19153 0.88612 0.88252 0.95429 0.91045 0.89480 0.89077 0.77954 0.83240 0.91156 0.89888 0.92709 0.92869 0.93125 0.92560 0.90095 0.90742 0.93358 0.79574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.89 11.43 59.85 0.68 1.57 16 2 N -0.40 -4.65 4.03 -67.18 -0.27 -4.92 16 3 N -0.24 -2.78 12.39 31.87 0.39 -2.39 16 4 C 0.09 0.93 12.30 -15.15 -0.19 0.75 16 5 C -0.24 -2.94 6.36 -105.20 -0.67 -3.61 16 6 C 0.06 0.80 9.79 -38.58 -0.38 0.43 16 7 C -0.22 -3.16 5.53 -104.83 -0.58 -3.74 16 8 C 0.56 9.85 7.46 -12.40 -0.09 9.76 16 9 O -0.55 -11.33 16.32 5.30 0.09 -11.25 16 10 N -0.58 -10.54 2.28 -172.24 -0.39 -10.94 16 11 C 0.11 2.39 5.81 -3.22 -0.02 2.37 16 12 C 0.17 3.63 3.09 -65.66 -0.20 3.43 16 13 H 0.12 2.97 6.35 -51.93 -0.33 2.64 16 14 C -0.14 -2.52 6.23 -24.95 -0.16 -2.68 16 15 C -0.12 -2.06 6.24 -24.96 -0.16 -2.22 16 16 C 0.13 2.46 4.32 -65.25 -0.28 2.17 16 17 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 18 C 0.07 1.12 4.33 -2.83 -0.01 1.11 16 19 N -0.58 -13.21 2.79 -152.14 -0.43 -13.63 16 20 C -0.23 -5.77 10.37 -15.06 -0.16 -5.93 16 21 H 0.08 1.86 7.85 -52.49 -0.41 1.45 16 22 C 0.00 -0.04 5.42 -17.43 -0.09 -0.13 16 23 N -0.91 -24.36 10.35 55.49 0.57 -23.78 16 24 Si 0.91 20.74 29.56 -169.99 -5.03 15.71 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C 0.19 2.57 8.59 -17.10 -0.15 2.42 16 29 N -0.51 -6.94 10.37 -12.03 -0.12 -7.06 16 30 C 0.32 4.32 7.96 -156.10 -1.24 3.08 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.15 1.70 8.02 -52.49 -0.42 1.28 16 36 H 0.07 1.49 7.14 -51.93 -0.37 1.12 16 37 H 0.08 1.99 7.77 -51.93 -0.40 1.59 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.96 7.86 -51.93 -0.41 0.56 16 40 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.12 3.88 -51.93 -0.20 0.92 16 43 H 0.07 1.26 8.04 -51.92 -0.42 0.85 16 44 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 45 H 0.19 2.33 5.18 -52.49 -0.27 2.05 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -30.86 359.83 -9.19 -40.05 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.74 Total: 4.00 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -3.69 Total: 8.78 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.24 Total: -62.72 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.86 -9.19 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029526933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.824 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds