Wall clock time and date at job start Wed Apr 1 2020 01:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39796 * 125.34172 * 2 1 4 4 C 1.30204 * 110.13556 * 180.02562 * 3 2 1 5 5 C 1.45971 * 107.58193 * 359.97438 * 4 3 2 6 6 C 1.39660 * 134.11546 * 180.30650 * 5 4 3 7 7 C 1.39513 * 117.94551 * 180.15113 * 6 5 4 8 8 C 1.47682 * 120.40673 * 179.78533 * 7 6 5 9 9 O 1.21574 * 120.00423 * 326.77291 * 8 7 6 10 10 N 1.34777 * 120.00066 * 146.77197 * 8 7 6 11 11 C 1.47159 * 120.71115 * 184.02073 * 10 8 7 12 12 C 1.53892 * 108.03489 * 132.73704 * 11 10 8 13 13 H 1.09000 * 112.09795 * 181.91153 * 12 11 10 14 14 C 1.54550 * 108.36469 * 306.24842 * 12 11 10 15 15 C 1.54830 * 104.74066 * 89.17294 * 14 12 11 16 16 C 1.54544 * 104.74782 * 359.97438 * 15 14 12 17 17 H 1.08998 * 112.68487 * 146.81237 * 16 15 14 18 18 C 1.47162 * 120.70772 * 3.99407 * 10 8 7 19 19 N 1.48309 * 107.20655 * 58.35555 * 12 11 10 20 20 C 1.36929 * 128.07573 * 106.10054 * 19 12 11 21 21 H 1.08001 * 120.00360 * 165.09615 * 20 19 12 22 22 C 1.38814 * 120.00253 * 345.09738 * 20 19 12 23 23 N 1.31621 * 119.99800 * 350.72537 * 22 20 19 24 24 Si 1.86793 * 120.00346 * 170.72428 * 22 20 19 25 25 H 1.48504 * 109.47435 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47524 * 300.00425 * 24 22 20 27 27 H 1.48509 * 109.46906 * 60.00124 * 24 22 20 28 28 C 1.40184 * 119.18181 * 359.51295 * 7 6 5 29 29 N 1.31186 * 121.37267 * 0.25369 * 28 7 6 30 30 C 1.32929 * 121.85186 * 359.97438 * 29 28 7 31 31 H 1.09002 * 109.46964 * 269.95906 * 1 2 3 32 32 H 1.08999 * 109.46924 * 29.95461 * 1 2 3 33 33 H 1.08992 * 109.47452 * 149.95732 * 1 2 3 34 34 H 1.08001 * 126.20805 * 180.02562 * 4 3 2 35 35 H 1.07998 * 121.03082 * 359.92133 * 6 5 4 36 36 H 1.08998 * 109.75274 * 13.10056 * 11 10 8 37 37 H 1.09002 * 109.78979 * 252.39452 * 11 10 8 38 38 H 1.09000 * 110.36674 * 208.13671 * 14 12 11 39 39 H 1.09001 * 110.36402 * 330.45658 * 14 12 11 40 40 H 1.09005 * 110.30794 * 241.24677 * 15 14 12 41 41 H 1.08998 * 110.61555 * 118.91521 * 15 14 12 42 42 H 1.08997 * 109.74827 * 346.90451 * 18 10 8 43 43 H 1.09007 * 109.74916 * 107.63426 * 18 10 8 44 44 H 0.97000 * 120.00056 * 179.97438 * 23 22 20 45 45 H 1.08000 * 119.30723 * 180.27125 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2736 1.1403 0.0000 4 6 3.5301 0.7988 -0.0005 5 6 3.5906 -0.6596 -0.0003 6 6 4.6327 -1.5894 0.0047 7 6 4.3001 -2.9443 -0.0002 8 6 5.3588 -3.9739 -0.0001 9 8 6.4104 -3.7647 -0.5732 10 7 5.1594 -5.1455 0.6355 11 6 6.2344 -6.1468 0.7209 12 6 6.3187 -6.6323 2.1788 13 1 7.1208 -7.3558 2.3243 14 6 6.4736 -5.3974 3.0950 15 6 5.0233 -4.9711 3.4302 16 6 4.1316 -5.9890 2.6837 17 1 3.2072 -6.2089 3.2176 18 6 3.8620 -5.4506 1.2595 19 7 4.9906 -7.1890 2.5332 20 6 4.6382 -8.5039 2.6808 21 1 3.7110 -8.7629 3.1704 22 6 5.4726 -9.5042 2.2012 23 7 6.5061 -9.1939 1.4476 24 14 5.1288 -11.2906 2.6253 25 1 6.1580 -12.1560 1.9951 26 1 5.1689 -11.4660 4.0994 27 1 3.7856 -11.6701 2.1181 28 6 2.9485 -3.3163 0.0005 29 7 1.9928 -2.4176 0.0007 30 6 2.2552 -1.1145 0.0008 31 1 -0.3633 -0.0007 1.0277 32 1 -0.3633 0.8904 -0.5131 33 1 -0.3634 -0.8895 -0.5144 34 1 4.3743 1.4724 -0.0003 35 1 5.6642 -1.2695 0.0085 36 1 7.1823 -5.6955 0.4276 37 1 6.0085 -6.9877 0.0651 38 1 7.0129 -5.6645 4.0038 39 1 6.9911 -4.5961 2.5675 40 1 4.8321 -3.9615 3.0664 41 1 4.8455 -5.0264 4.5041 42 1 3.2593 -4.5443 1.3181 43 1 3.3385 -6.2044 0.6712 44 1 7.0895 -9.8928 1.1128 45 1 2.6887 -4.3646 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029526933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:27 Heat of formation + Delta-G solvation = 119.032669 kcal Electronic energy + Delta-G solvation = -30369.061020 eV Core-core repulsion = 26389.603071 eV Total energy + Delta-G solvation = -3979.457949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.77010 -41.60680 -39.63127 -38.72027 -35.53465 -34.90038 -34.18103 -32.92731 -32.44904 -31.25315 -30.86496 -28.28479 -27.58164 -26.00950 -25.76395 -24.70688 -24.19159 -21.98686 -21.58790 -21.23191 -20.42962 -19.23701 -18.80028 -18.27649 -17.33966 -17.08908 -16.90814 -16.75751 -16.37251 -16.15926 -15.56162 -15.45755 -15.03536 -14.77365 -14.68402 -14.44488 -14.37560 -14.33098 -13.90169 -13.52613 -13.42106 -13.38267 -13.27408 -13.05023 -12.81030 -12.66406 -12.51236 -12.20882 -11.98896 -11.83206 -11.60331 -11.51294 -11.44427 -11.18472 -11.04836 -10.68983 -10.51457 -10.12056 -9.76121 -9.38202 -8.67108 -7.81705 -5.17059 -0.37486 -0.25191 1.08431 1.36488 1.52018 1.53383 1.59209 1.73724 2.03936 2.53229 2.62694 3.02688 3.19358 3.37977 3.43073 3.53055 3.53386 3.69703 3.94737 4.06108 4.13792 4.24397 4.29457 4.33456 4.34886 4.40801 4.41602 4.48729 4.61915 4.67886 4.72742 4.81885 4.90922 5.00282 5.06479 5.09828 5.13154 5.15670 5.29019 5.35744 5.40984 5.57108 5.60230 5.66791 5.85580 6.25828 6.29773 6.55076 6.69453 7.09229 7.15594 7.76231 8.54793 9.29436 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.003027 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.932955 B = 9248.686528 C = 9763.502993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.400 5.400 3 N -0.259 5.259 4 C 0.110 3.890 5 C -0.246 4.246 6 C 0.075 3.925 7 C -0.233 4.233 8 C 0.564 3.436 9 O -0.585 6.585 10 N -0.583 5.583 11 C 0.131 3.869 12 C 0.165 3.835 13 H 0.081 0.919 14 C -0.127 4.127 15 C -0.111 4.111 16 C 0.128 3.872 17 H 0.094 0.906 18 C 0.076 3.924 19 N -0.603 5.603 20 C -0.231 4.231 21 H 0.082 0.918 22 C -0.054 4.054 23 N -0.937 5.937 24 Si 0.969 3.031 25 H -0.301 1.301 26 H -0.282 1.282 27 H -0.279 1.279 28 C 0.192 3.808 29 N -0.513 5.513 30 C 0.309 3.691 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.245 0.755 35 H 0.164 0.836 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.067 0.933 44 H 0.247 0.753 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.432 19.495 -0.461 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.190 5.190 3 N -0.071 5.071 4 C -0.088 4.088 5 C -0.256 4.256 6 C 0.046 3.954 7 C -0.241 4.241 8 C 0.353 3.647 9 O -0.468 6.468 10 N -0.313 5.313 11 C 0.007 3.993 12 C 0.057 3.943 13 H 0.099 0.901 14 C -0.166 4.166 15 C -0.149 4.149 16 C 0.021 3.979 17 H 0.112 0.888 18 C -0.048 4.048 19 N -0.325 5.325 20 C -0.360 4.360 21 H 0.100 0.900 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.799 3.201 25 H -0.228 1.228 26 H -0.209 1.209 27 H -0.205 1.205 28 C 0.023 3.977 29 N -0.228 5.228 30 C 0.069 3.931 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.261 0.739 35 H 0.181 0.819 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.133 0.867 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -10.814 20.142 -0.782 22.875 hybrid contribution 1.515 -2.024 -0.111 2.531 sum -9.299 18.118 -0.893 20.385 Atomic orbital electron populations 1.22084 0.71648 1.05480 1.04396 1.48441 1.07463 0.99609 1.63456 1.76725 1.03358 1.07525 1.19471 1.25797 0.95461 0.91867 0.95683 1.20641 0.93445 0.95917 1.15637 1.21216 0.99957 0.89261 0.84953 1.20466 0.94681 0.94455 1.14501 1.18209 0.86545 0.81667 0.78281 1.90725 1.29336 1.80153 1.46541 1.48050 1.14665 1.15931 1.52672 1.21997 0.88751 0.88834 0.99767 1.21732 0.90102 0.92301 0.90139 0.90131 1.22598 0.97305 0.97535 0.99171 1.22462 0.94444 0.97979 1.00055 1.22385 0.95151 0.87134 0.93260 0.88773 1.23454 0.84161 1.01090 0.96092 1.45363 1.05634 1.00595 1.80890 1.19268 1.05464 0.81246 1.30032 0.90038 1.25500 0.98988 1.01168 0.99218 1.70012 1.18568 1.32064 1.37797 0.85299 0.76773 0.80572 0.77454 1.22760 1.20887 1.20516 1.23637 0.86578 0.99411 0.88102 1.66808 1.37116 0.98759 1.20079 1.19477 0.89708 0.88501 0.95405 0.89935 0.87735 0.88811 0.73868 0.81858 0.92079 0.93682 0.92609 0.92423 0.91188 0.91281 0.86739 0.91532 0.94409 0.78991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.39 11.43 127.77 1.46 2.85 16 2 N -0.40 -8.29 4.03 -366.45 -1.48 -9.76 16 3 N -0.26 -5.06 12.39 -53.08 -0.66 -5.72 16 4 C 0.11 1.76 12.30 86.94 1.07 2.83 16 5 C -0.25 -5.31 6.36 -20.24 -0.13 -5.44 16 6 C 0.07 1.73 9.79 22.92 0.22 1.95 16 7 C -0.23 -6.38 5.53 -20.00 -0.11 -6.49 16 8 C 0.56 19.52 7.46 86.74 0.65 20.17 16 9 O -0.59 -24.02 16.32 -3.95 -0.06 -24.09 16 10 N -0.58 -21.07 2.28 -817.11 -1.87 -22.93 16 11 C 0.13 5.71 5.81 86.55 0.50 6.22 16 12 C 0.16 7.38 3.09 45.47 0.14 7.52 16 13 H 0.08 4.24 6.35 -2.39 -0.02 4.23 16 14 C -0.13 -4.65 6.23 31.75 0.20 -4.45 16 15 C -0.11 -3.48 6.24 31.74 0.20 -3.28 16 16 C 0.13 4.48 4.32 45.72 0.20 4.67 16 17 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 18 C 0.08 2.40 4.33 86.81 0.38 2.77 16 19 N -0.60 -27.46 2.79 -635.25 -1.78 -29.23 16 20 C -0.23 -11.75 10.37 84.04 0.87 -10.88 16 21 H 0.08 3.96 7.85 -2.91 -0.02 3.93 16 22 C -0.05 -2.87 5.42 84.86 0.46 -2.41 16 23 N -0.94 -52.33 10.35 21.65 0.22 -52.11 16 24 Si 0.97 43.53 29.56 68.60 2.03 45.56 16 25 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 28 C 0.19 4.81 8.59 85.26 0.73 5.54 16 29 N -0.51 -12.88 10.37 -191.97 -1.99 -14.88 16 30 C 0.31 7.43 7.96 134.18 1.07 8.50 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.25 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.16 3.27 8.02 -2.91 -0.02 3.24 16 36 H 0.06 2.73 7.14 -2.39 -0.02 2.71 16 37 H 0.04 2.30 7.77 -2.39 -0.02 2.28 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.04 7.86 -2.39 -0.02 2.03 16 40 H 0.07 1.96 7.87 -2.38 -0.02 1.94 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.12 2.90 3.88 -2.39 -0.01 2.89 16 43 H 0.07 2.22 8.04 -2.38 -0.02 2.20 16 44 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 45 H 0.19 4.46 5.18 -2.91 -0.02 4.44 16 Total: -1.00 -68.42 359.83 3.36 -65.06 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.03 Total: 18.04 kcal Atomic # 6 Polarization: 22.16 SS G_CDS: 7.91 Total: 30.06 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -7.54 Total: -134.63 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.06 Total: -24.09 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -68.42 3.36 -65.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029526933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.089 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds