Wall clock time and date at job start Wed Apr 1 2020 01:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28816 * 125.94137 * 2 1 4 4 N 1.28642 * 111.79116 * 179.97438 * 3 2 1 5 5 C 1.34749 * 109.29244 * 359.97438 * 4 3 2 6 6 C 1.39908 * 134.59216 * 180.02562 * 5 4 3 7 7 C 1.36164 * 119.97659 * 179.97438 * 6 5 4 8 8 C 1.40255 * 120.55563 * 0.02562 * 7 6 5 9 9 C 1.47724 * 119.87651 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99741 * 212.42277 * 9 8 7 11 11 N 1.34778 * 120.00206 * 32.42811 * 9 8 7 12 12 C 1.47166 * 120.70856 * 5.42148 * 11 9 8 13 13 C 1.55897 * 107.94655 * 132.41520 * 12 11 9 14 14 H 1.08993 * 112.45241 * 181.85086 * 13 12 11 15 15 C 1.54550 * 108.43936 * 307.13520 * 13 12 11 16 16 C 1.53730 * 104.95814 * 88.29042 * 15 13 12 17 17 C 1.54549 * 104.95220 * 359.97438 * 16 15 13 18 18 H 1.08994 * 112.18365 * 146.28365 * 17 16 15 19 19 C 1.47162 * 120.70974 * 185.40663 * 11 9 8 20 20 N 1.48310 * 106.17714 * 58.77991 * 13 12 11 21 21 C 1.36930 * 128.07137 * 106.44031 * 20 13 12 22 22 H 1.08004 * 119.99707 * 164.64188 * 21 20 13 23 23 C 1.38814 * 120.00354 * 344.64967 * 21 20 13 24 24 N 1.31609 * 120.00043 * 349.68032 * 23 21 20 25 25 Si 1.86806 * 119.99882 * 169.68366 * 23 21 20 26 26 H 1.48506 * 109.46712 * 269.99933 * 25 23 21 27 27 H 1.48500 * 109.47094 * 29.99711 * 25 23 21 28 28 H 1.48496 * 109.47140 * 150.00291 * 25 23 21 29 29 C 1.39161 * 120.24284 * 0.22508 * 8 7 6 30 30 C 1.37362 * 125.94315 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47231 * 90.02037 * 1 2 3 32 32 H 1.08999 * 109.47346 * 210.02451 * 1 2 3 33 33 H 1.09005 * 109.47002 * 330.02248 * 1 2 3 34 34 H 1.07998 * 120.01424 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.71993 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.75218 * 252.37439 * 12 11 9 37 37 H 1.09002 * 109.75040 * 13.11211 * 12 11 9 38 38 H 1.09008 * 110.35763 * 207.00671 * 15 13 12 39 39 H 1.08997 * 110.36490 * 329.21091 * 15 13 12 40 40 H 1.08993 * 110.41648 * 241.06462 * 16 15 13 41 41 H 1.09003 * 110.20912 * 118.81355 * 16 15 13 42 42 H 1.09001 * 109.75175 * 107.62461 * 19 11 9 43 43 H 1.08996 * 109.78785 * 346.91945 * 19 11 9 44 44 H 0.96998 * 120.00149 * 179.97438 * 24 23 21 45 45 H 1.07992 * 120.25129 * 179.72835 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7284 0.0005 5 6 3.5893 -0.6136 0.0015 6 6 4.6696 -1.5026 0.0028 7 6 4.4455 -2.8457 0.0041 8 6 3.1368 -3.3502 0.0035 9 6 2.9110 -4.8101 0.0043 10 8 1.9402 -5.2752 -0.5605 11 7 3.7811 -5.6263 0.6314 12 6 4.8948 -5.0746 1.4194 13 6 4.9248 -5.8138 2.7917 14 1 5.7074 -5.4374 3.4503 15 6 3.5182 -5.7245 3.4258 16 6 2.7587 -6.9445 2.8800 17 6 3.7710 -7.6665 1.9621 18 1 3.6416 -8.7486 1.9776 19 6 3.6377 -7.0882 0.5428 20 7 5.0976 -7.2538 2.4817 21 6 6.2186 -8.0235 2.6427 22 1 6.1428 -9.1005 2.6131 23 6 7.4522 -7.4197 2.8441 24 7 7.5837 -6.1206 2.6796 25 14 8.9256 -8.4512 3.3487 26 1 8.9965 -8.5215 4.8304 27 1 8.7837 -9.8216 2.7944 28 1 10.1678 -7.8306 2.8226 29 6 2.0504 -2.4806 -0.0031 30 6 2.2713 -1.1121 0.0005 31 1 -0.3634 -0.0004 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 5.6810 -1.1238 0.0029 35 1 5.2825 -3.5282 0.0055 36 1 5.8343 -5.2317 0.8896 37 1 4.7374 -4.0085 1.5834 38 1 3.5878 -5.7795 4.5123 39 1 3.0241 -4.8009 3.1243 40 1 1.8882 -6.6254 2.3070 41 1 2.4563 -7.5972 3.6990 42 1 4.4200 -7.4971 -0.0966 43 1 2.6591 -7.3388 0.1335 44 1 8.4456 -5.6987 2.8207 45 1 1.0427 -2.8689 -0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029566180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:27 Heat of formation + Delta-G solvation = 138.464425 kcal Electronic energy + Delta-G solvation = -30530.704657 eV Core-core repulsion = 26552.089332 eV Total energy + Delta-G solvation = -3978.615325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.26568 -40.35920 -38.32511 -37.16219 -35.00954 -33.92350 -32.59267 -31.18763 -30.90271 -30.08711 -29.32107 -28.12145 -26.47604 -24.84162 -24.09756 -23.46523 -23.10086 -21.24139 -20.34289 -19.70362 -18.82598 -18.38999 -17.67913 -16.86130 -16.75314 -15.97855 -15.52300 -15.36746 -14.92749 -14.59433 -14.42098 -13.96198 -13.82847 -13.76573 -13.58243 -13.32035 -13.06910 -12.82522 -12.53405 -12.22750 -12.19516 -11.91891 -11.84324 -11.77613 -11.42007 -11.12925 -10.94002 -10.88861 -10.83816 -10.80206 -10.44163 -10.11069 -9.92058 -9.69665 -9.66346 -9.57614 -8.99671 -8.77356 -8.45486 -8.14072 -6.90656 -5.92576 -3.26194 0.31496 1.13424 1.98095 2.07782 3.00964 3.31987 3.34830 3.39058 3.39637 3.71274 3.88905 4.22523 4.36448 4.53541 4.62736 4.66289 4.91201 4.97578 4.99351 5.10254 5.16529 5.26198 5.34762 5.61118 5.65628 5.72495 5.76072 5.83704 5.89547 5.93593 6.02744 6.14069 6.22059 6.24096 6.32406 6.33657 6.47742 6.51621 6.52000 6.58470 6.64802 6.82135 6.85765 7.15310 7.38345 7.59232 7.92357 8.05827 8.18979 8.49228 8.98626 9.60637 10.36929 11.21198 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.003385 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.999755 B = 8269.271226 C = 9212.559376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.319 5.319 3 N -0.023 5.023 4 N -0.257 5.257 5 C 0.025 3.975 6 C -0.058 4.058 7 C -0.090 4.090 8 C -0.085 4.085 9 C 0.550 3.450 10 O -0.558 6.558 11 N -0.579 5.579 12 C 0.089 3.911 13 C 0.168 3.832 14 H 0.121 0.879 15 C -0.135 4.135 16 C -0.124 4.124 17 C 0.134 3.866 18 H 0.078 0.922 19 C 0.103 3.897 20 N -0.585 5.585 21 C -0.226 4.226 22 H 0.077 0.923 23 C -0.001 4.001 24 N -0.914 5.914 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.281 1.281 28 H -0.291 1.291 29 C -0.047 4.047 30 C 0.013 3.987 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.255 0.745 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.858 8.427 -3.503 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.120 5.120 3 N -0.004 5.004 4 N -0.132 5.132 5 C -0.100 4.100 6 C -0.080 4.080 7 C -0.111 4.111 8 C -0.092 4.092 9 C 0.338 3.662 10 O -0.439 6.439 11 N -0.309 5.309 12 C -0.034 4.034 13 C 0.060 3.940 14 H 0.138 0.862 15 C -0.174 4.174 16 C -0.163 4.163 17 C 0.025 3.975 18 H 0.096 0.904 19 C -0.022 4.022 20 N -0.306 5.306 21 C -0.354 4.354 22 H 0.094 0.906 23 C -0.199 4.199 24 N -0.560 5.560 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.207 1.207 28 H -0.217 1.217 29 C -0.069 4.069 30 C -0.105 4.105 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.088 9.686 -3.744 15.936 hybrid contribution 0.591 -1.484 0.231 1.614 sum -11.496 8.202 -3.513 14.553 Atomic orbital electron populations 1.22234 0.72186 1.05933 1.04955 1.47058 1.08711 1.03050 1.53147 1.77953 0.96996 1.12370 1.13074 1.75331 1.07480 1.11481 1.18887 1.20069 0.93257 0.91067 1.05617 1.19967 0.97611 0.90981 0.99460 1.21423 0.96882 0.95425 0.97337 1.19837 0.93295 0.93735 1.02326 1.18076 0.82894 0.85560 0.79659 1.90725 1.29482 1.76877 1.46781 1.48106 1.28103 1.06853 1.47866 1.23513 0.88221 0.96761 0.94934 1.22298 0.93672 0.85398 0.92583 0.86191 1.22506 0.98405 0.96782 0.99714 1.22376 0.97650 0.97464 0.98792 1.21970 0.87630 0.97191 0.90676 0.90368 1.22400 1.01315 0.78762 0.99699 1.45207 1.06937 1.06414 1.72027 1.19018 0.83869 0.89495 1.43004 0.90569 1.24794 0.97081 0.96175 1.01809 1.69803 1.23971 1.08576 1.53698 0.86129 0.82099 0.79224 0.78328 1.21602 1.20688 1.21696 1.19923 0.99901 0.87612 0.99507 1.19575 0.91014 0.90706 1.09184 0.89187 0.88332 0.87914 0.83734 0.82619 0.89279 0.90951 0.92675 0.93194 0.92610 0.92659 0.91553 0.90495 0.93444 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 11.40 59.85 0.68 1.21 16 2 N -0.32 -3.68 3.80 -65.54 -0.25 -3.93 16 3 N -0.02 -0.32 13.07 60.35 0.79 0.47 16 4 N -0.26 -3.94 12.42 32.09 0.40 -3.54 16 5 C 0.03 0.37 7.36 -84.95 -0.63 -0.26 16 6 C -0.06 -0.76 10.03 -39.70 -0.40 -1.16 16 7 C -0.09 -1.23 7.31 -39.57 -0.29 -1.52 16 8 C -0.08 -1.26 5.35 -104.92 -0.56 -1.82 16 9 C 0.55 9.49 7.41 -12.38 -0.09 9.40 16 10 O -0.56 -10.80 16.20 5.31 0.09 -10.71 16 11 N -0.58 -10.27 2.29 -171.44 -0.39 -10.67 16 12 C 0.09 1.64 4.12 -2.13 -0.01 1.63 16 13 C 0.17 3.46 3.21 -64.57 -0.21 3.25 16 14 H 0.12 2.82 6.39 -51.93 -0.33 2.48 16 15 C -0.13 -2.41 6.19 -25.54 -0.16 -2.57 16 16 C -0.12 -2.13 6.18 -25.54 -0.16 -2.29 16 17 C 0.13 2.52 4.27 -65.67 -0.28 2.24 16 18 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 19 C 0.10 1.86 5.94 -3.25 -0.02 1.84 16 20 N -0.58 -13.06 2.78 -151.42 -0.42 -13.49 16 21 C -0.23 -5.62 10.36 -15.06 -0.16 -5.78 16 22 H 0.08 1.88 7.85 -52.48 -0.41 1.46 16 23 C 0.00 -0.04 5.41 -17.43 -0.09 -0.13 16 24 N -0.91 -23.31 10.41 55.49 0.58 -22.73 16 25 Si 0.91 20.41 29.57 -169.99 -5.03 15.39 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 28 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 29 C -0.05 -0.62 9.60 -39.10 -0.38 -0.99 16 30 C 0.01 0.18 6.93 -84.24 -0.58 -0.40 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.16 2.16 5.56 -52.49 -0.29 1.87 16 36 H 0.09 1.86 7.42 -51.93 -0.39 1.47 16 37 H 0.07 1.19 4.76 -51.93 -0.25 0.95 16 38 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 40 H 0.06 0.93 7.86 -51.93 -0.41 0.52 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.08 1.35 7.08 -51.93 -0.37 0.98 16 44 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 45 H 0.14 1.64 7.94 -52.49 -0.42 1.22 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -29.88 359.05 -7.94 -37.82 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.79 Total: 3.33 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -3.32 Total: 2.65 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.70 Total: -53.87 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.88 -7.94 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029566180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.280 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds