Wall clock time and date at job start Wed Apr 1 2020 01:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28816 * 125.94137 * 2 1 4 4 N 1.28642 * 111.79116 * 179.97438 * 3 2 1 5 5 C 1.34749 * 109.29244 * 359.97438 * 4 3 2 6 6 C 1.39908 * 134.59216 * 180.02562 * 5 4 3 7 7 C 1.36164 * 119.97659 * 179.97438 * 6 5 4 8 8 C 1.40255 * 120.55563 * 0.02562 * 7 6 5 9 9 C 1.47724 * 119.87651 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99741 * 212.42277 * 9 8 7 11 11 N 1.34778 * 120.00206 * 32.42811 * 9 8 7 12 12 C 1.47166 * 120.70856 * 5.42148 * 11 9 8 13 13 C 1.55897 * 107.94655 * 132.41520 * 12 11 9 14 14 H 1.08993 * 112.45241 * 181.85086 * 13 12 11 15 15 C 1.54550 * 108.43936 * 307.13520 * 13 12 11 16 16 C 1.53730 * 104.95814 * 88.29042 * 15 13 12 17 17 C 1.54549 * 104.95220 * 359.97438 * 16 15 13 18 18 H 1.08994 * 112.18365 * 146.28365 * 17 16 15 19 19 C 1.47162 * 120.70974 * 185.40663 * 11 9 8 20 20 N 1.48310 * 106.17714 * 58.77991 * 13 12 11 21 21 C 1.36930 * 128.07137 * 106.44031 * 20 13 12 22 22 H 1.08004 * 119.99707 * 164.64188 * 21 20 13 23 23 C 1.38814 * 120.00354 * 344.64967 * 21 20 13 24 24 N 1.31609 * 120.00043 * 349.68032 * 23 21 20 25 25 Si 1.86806 * 119.99882 * 169.68366 * 23 21 20 26 26 H 1.48506 * 109.46712 * 269.99933 * 25 23 21 27 27 H 1.48500 * 109.47094 * 29.99711 * 25 23 21 28 28 H 1.48496 * 109.47140 * 150.00291 * 25 23 21 29 29 C 1.39161 * 120.24284 * 0.22508 * 8 7 6 30 30 C 1.37362 * 125.94315 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47231 * 90.02037 * 1 2 3 32 32 H 1.08999 * 109.47346 * 210.02451 * 1 2 3 33 33 H 1.09005 * 109.47002 * 330.02248 * 1 2 3 34 34 H 1.07998 * 120.01424 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.71993 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.75218 * 252.37439 * 12 11 9 37 37 H 1.09002 * 109.75040 * 13.11211 * 12 11 9 38 38 H 1.09008 * 110.35763 * 207.00671 * 15 13 12 39 39 H 1.08997 * 110.36490 * 329.21091 * 15 13 12 40 40 H 1.08993 * 110.41648 * 241.06462 * 16 15 13 41 41 H 1.09003 * 110.20912 * 118.81355 * 16 15 13 42 42 H 1.09001 * 109.75175 * 107.62461 * 19 11 9 43 43 H 1.08996 * 109.78785 * 346.91945 * 19 11 9 44 44 H 0.96998 * 120.00149 * 179.97438 * 24 23 21 45 45 H 1.07992 * 120.25129 * 179.72835 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7284 0.0005 5 6 3.5893 -0.6136 0.0015 6 6 4.6696 -1.5026 0.0028 7 6 4.4455 -2.8457 0.0041 8 6 3.1368 -3.3502 0.0035 9 6 2.9110 -4.8101 0.0043 10 8 1.9402 -5.2752 -0.5605 11 7 3.7811 -5.6263 0.6314 12 6 4.8948 -5.0746 1.4194 13 6 4.9248 -5.8138 2.7917 14 1 5.7074 -5.4374 3.4503 15 6 3.5182 -5.7245 3.4258 16 6 2.7587 -6.9445 2.8800 17 6 3.7710 -7.6665 1.9621 18 1 3.6416 -8.7486 1.9776 19 6 3.6377 -7.0882 0.5428 20 7 5.0976 -7.2538 2.4817 21 6 6.2186 -8.0235 2.6427 22 1 6.1428 -9.1005 2.6131 23 6 7.4522 -7.4197 2.8441 24 7 7.5837 -6.1206 2.6796 25 14 8.9256 -8.4512 3.3487 26 1 8.9965 -8.5215 4.8304 27 1 8.7837 -9.8216 2.7944 28 1 10.1678 -7.8306 2.8226 29 6 2.0504 -2.4806 -0.0031 30 6 2.2713 -1.1121 0.0005 31 1 -0.3634 -0.0004 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 5.6810 -1.1238 0.0029 35 1 5.2825 -3.5282 0.0055 36 1 5.8343 -5.2317 0.8896 37 1 4.7374 -4.0085 1.5834 38 1 3.5878 -5.7795 4.5123 39 1 3.0241 -4.8009 3.1243 40 1 1.8882 -6.6254 2.3070 41 1 2.4563 -7.5972 3.6990 42 1 4.4200 -7.4971 -0.0966 43 1 2.6591 -7.3388 0.1335 44 1 8.4456 -5.6987 2.8207 45 1 1.0427 -2.8689 -0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029566180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:26 Heat of formation + Delta-G solvation = 121.620444 kcal Electronic energy + Delta-G solvation = -30531.435067 eV Core-core repulsion = 26552.089332 eV Total energy + Delta-G solvation = -3979.345735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.27678 -41.76205 -39.69592 -38.40132 -35.91480 -35.46172 -34.30066 -32.53055 -31.92731 -31.40816 -30.99210 -28.87129 -27.94273 -26.17657 -25.64818 -24.77259 -24.34052 -22.19495 -21.70258 -21.20756 -20.37328 -19.62384 -18.76074 -18.17436 -17.78667 -17.34404 -16.98628 -16.73556 -16.51595 -15.91481 -15.49808 -15.43962 -15.12340 -14.97675 -14.65279 -14.40596 -14.36779 -13.98029 -13.69659 -13.54090 -13.43370 -13.32334 -13.18478 -13.07299 -12.82830 -12.80150 -12.54245 -12.51308 -11.97861 -11.87735 -11.82720 -11.75588 -11.46047 -11.41762 -11.12033 -11.02921 -10.61804 -10.02459 -9.76388 -9.40838 -8.64791 -7.81979 -5.15092 -0.75008 0.07067 1.00394 1.16499 1.52143 1.54777 1.60709 1.75834 2.03219 2.53198 2.56952 2.85334 3.37292 3.40086 3.45514 3.53617 3.57860 3.93021 3.93928 4.08503 4.13493 4.23687 4.24906 4.28912 4.33701 4.43048 4.48878 4.58630 4.59643 4.74294 4.80237 4.83873 4.86180 4.99407 5.06128 5.08448 5.11021 5.15250 5.16863 5.34110 5.38863 5.42475 5.50650 5.58395 5.64255 5.84408 6.26813 6.51380 7.10184 7.12441 7.16033 7.76434 8.55729 9.29818 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.003385 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.999755 B = 8269.271226 C = 9212.559376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.303 5.303 3 N -0.028 5.028 4 N -0.289 5.289 5 C 0.013 3.987 6 C -0.057 4.057 7 C -0.089 4.089 8 C -0.103 4.103 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.581 5.581 12 C 0.108 3.892 13 C 0.162 3.838 14 H 0.088 0.912 15 C -0.127 4.127 16 C -0.113 4.113 17 C 0.130 3.870 18 H 0.084 0.916 19 C 0.108 3.892 20 N -0.604 5.604 21 C -0.234 4.234 22 H 0.074 0.926 23 C -0.046 4.046 24 N -0.929 5.929 25 Si 0.965 3.035 26 H -0.292 1.292 27 H -0.277 1.277 28 H -0.298 1.298 29 C -0.028 4.028 30 C 0.007 3.993 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.249 0.751 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 9.034 -3.549 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.104 5.104 3 N -0.009 5.009 4 N -0.163 5.163 5 C -0.113 4.113 6 C -0.079 4.079 7 C -0.110 4.110 8 C -0.110 4.110 9 C 0.346 3.654 10 O -0.459 6.459 11 N -0.311 5.311 12 C -0.015 4.015 13 C 0.054 3.946 14 H 0.106 0.894 15 C -0.166 4.166 16 C -0.152 4.152 17 C 0.022 3.978 18 H 0.102 0.898 19 C -0.016 4.016 20 N -0.326 5.326 21 C -0.363 4.363 22 H 0.091 0.909 23 C -0.241 4.241 24 N -0.576 5.576 25 Si 0.795 3.205 26 H -0.220 1.220 27 H -0.202 1.202 28 H -0.224 1.224 29 C -0.050 4.050 30 C -0.113 4.113 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.177 0.823 35 H 0.168 0.832 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.320 10.307 -3.795 18.047 hybrid contribution 1.140 -1.606 0.204 1.980 sum -13.180 8.702 -3.591 16.197 Atomic orbital electron populations 1.22808 0.68960 1.08011 1.06979 1.47532 1.10355 1.01882 1.50662 1.77882 0.96961 1.13091 1.12952 1.75312 1.08355 1.11988 1.20637 1.20344 0.94273 0.91129 1.05573 1.20083 0.98303 0.90553 0.98993 1.21306 0.96438 0.95568 0.97720 1.19659 0.94189 0.92417 1.04778 1.18308 0.82075 0.86356 0.78617 1.90710 1.30251 1.77521 1.47450 1.48053 1.28119 1.06751 1.48148 1.23159 0.87319 0.97588 0.93482 1.22252 0.94270 0.84749 0.93286 0.89424 1.22415 0.96707 0.97842 0.99594 1.22285 0.97153 0.96985 0.98742 1.22138 0.86485 0.97908 0.91248 0.89791 1.22256 1.01214 0.79159 0.98979 1.45363 1.07460 1.07098 1.72660 1.19224 0.84972 0.89800 1.42329 0.90871 1.25368 0.98947 0.97108 1.02672 1.69945 1.23762 1.09321 1.54554 0.85295 0.79505 0.78224 0.77478 1.21979 1.20192 1.22431 1.19998 1.00215 0.87261 0.97548 1.19610 0.91015 0.91102 1.09546 0.87128 0.86328 0.85920 0.82268 0.83190 0.92183 0.88958 0.92576 0.91756 0.91526 0.91582 0.93196 0.89419 0.94127 0.82508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 11.40 127.77 1.46 2.04 16 2 N -0.30 -6.16 3.80 -361.26 -1.37 -7.54 16 3 N -0.03 -0.72 13.07 37.02 0.48 -0.24 16 4 N -0.29 -8.56 12.42 -52.39 -0.65 -9.21 16 5 C 0.01 0.37 7.36 39.75 0.29 0.66 16 6 C -0.06 -1.46 10.03 22.19 0.22 -1.24 16 7 C -0.09 -2.39 7.31 22.28 0.16 -2.22 16 8 C -0.10 -2.90 5.35 -20.06 -0.11 -3.01 16 9 C 0.56 18.38 7.41 86.75 0.64 19.02 16 10 O -0.58 -21.24 16.20 -3.93 -0.06 -21.30 16 11 N -0.58 -20.17 2.29 -814.59 -1.86 -22.03 16 12 C 0.11 3.98 4.12 87.26 0.36 4.34 16 13 C 0.16 6.68 3.21 46.17 0.15 6.83 16 14 H 0.09 4.22 6.39 -2.39 -0.02 4.20 16 15 C -0.13 -4.34 6.19 31.37 0.19 -4.15 16 16 C -0.11 -3.65 6.18 31.37 0.19 -3.45 16 17 C 0.13 4.79 4.27 45.45 0.19 4.98 16 18 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 19 C 0.11 3.87 5.94 86.54 0.51 4.38 16 20 N -0.60 -27.11 2.78 -632.96 -1.76 -28.87 16 21 C -0.23 -11.81 10.36 84.03 0.87 -10.93 16 22 H 0.07 3.63 7.85 -2.91 -0.02 3.61 16 23 C -0.05 -2.34 5.41 84.86 0.46 -1.88 16 24 N -0.93 -48.52 10.41 21.65 0.23 -48.30 16 25 Si 0.96 42.58 29.57 68.60 2.03 44.60 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 29 C -0.03 -0.66 9.60 22.58 0.22 -0.45 16 30 C 0.01 0.16 6.93 39.02 0.27 0.43 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.15 4.18 5.56 -2.91 -0.02 4.17 16 36 H 0.06 2.58 7.42 -2.39 -0.02 2.56 16 37 H 0.09 3.01 4.76 -2.39 -0.01 3.00 16 38 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.06 2.01 7.88 -2.39 -0.02 1.99 16 40 H 0.07 2.03 7.86 -2.39 -0.02 2.01 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 2.95 7.08 -2.39 -0.02 2.93 16 44 H 0.25 12.89 8.31 -92.71 -0.77 12.12 16 45 H 0.16 3.15 7.94 -2.91 -0.02 3.12 16 Total: -1.00 -64.22 359.05 4.15 -60.07 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.03 Total: 17.46 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 6.09 Total: 15.35 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -4.94 Total: -116.18 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -64.22 4.15 -60.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029566180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.687 kcal (2) G-P(sol) polarization free energy of solvation -64.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds