Wall clock time and date at job start Wed Apr 1 2020 01:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36434 * 125.49469 * 2 1 4 4 C 1.34583 * 108.56215 * 180.02562 * 3 2 1 5 5 C 1.41929 * 107.33109 * 0.02562 * 4 3 2 6 6 C 1.48047 * 126.47208 * 179.97438 * 5 4 3 7 7 C 1.36684 * 126.60051 * 0.02562 * 6 5 4 8 8 C 1.41221 * 105.43951 * 179.97438 * 7 6 5 9 9 C 1.47741 * 126.34550 * 180.02562 * 8 7 6 10 10 O 1.21570 * 119.99184 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00388 * 179.97438 * 9 8 7 12 12 C 1.47863 * 126.94308 * 0.02562 * 11 9 8 13 13 C 1.56024 * 105.10300 * 181.98334 * 12 11 9 14 14 H 1.08996 * 116.25092 * 159.68439 * 13 12 11 15 15 C 1.57085 * 99.60831 * 32.80406 * 13 12 11 16 16 C 1.49290 * 126.94215 * 179.71105 * 11 9 8 17 17 H 1.08995 * 116.15302 * 15.85864 * 16 11 9 18 18 C 1.55478 * 104.35454 * 246.77738 * 16 11 9 19 19 N 1.47869 * 105.17275 * 288.90733 * 18 16 11 20 20 C 1.36939 * 126.94987 * 181.92093 * 19 18 16 21 21 H 1.08002 * 120.00122 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99580 * 0.02562 * 20 19 18 23 23 N 1.31620 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99898 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47193 * 89.99917 * 24 22 20 26 26 H 1.48498 * 109.47026 * 209.99884 * 24 22 20 27 27 H 1.48501 * 109.47047 * 330.00108 * 24 22 20 28 28 N 1.31824 * 107.31981 * 359.97438 * 8 7 6 29 29 N 1.28448 * 110.43367 * 0.02562 * 28 8 7 30 30 H 0.96996 * 125.00213 * 180.02562 * 29 28 8 31 31 C 1.36163 * 125.48729 * 180.35325 * 2 1 3 32 32 H 1.09000 * 109.47299 * 89.97403 * 1 2 3 33 33 H 1.09001 * 109.47290 * 209.97385 * 1 2 3 34 34 H 1.09007 * 109.46933 * 329.97442 * 1 2 3 35 35 H 1.07997 * 125.71832 * 0.02562 * 3 2 1 36 36 H 1.08001 * 126.33390 * 180.02562 * 4 3 2 37 37 H 1.08004 * 127.27635 * 0.02562 * 7 6 5 38 38 H 1.09002 * 110.32149 * 300.88548 * 12 11 9 39 39 H 1.09000 * 110.31647 * 62.97849 * 12 11 9 40 40 H 1.09005 * 112.36162 * 64.27617 * 15 13 12 41 41 H 1.08998 * 112.37201 * 191.71325 * 15 13 12 42 42 H 1.08996 * 110.35311 * 169.94378 * 18 16 11 43 43 H 1.09000 * 110.30215 * 47.84058 * 18 16 11 44 44 H 0.96994 * 119.99801 * 179.97438 * 23 22 20 45 45 H 1.08000 * 125.98031 * 359.96754 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2571 1.1108 0.0000 4 6 3.5446 0.7188 -0.0006 5 6 3.5545 -0.7004 -0.0015 6 6 4.7511 -1.5721 -0.0030 7 6 6.0559 -1.1651 -0.0031 8 6 6.8202 -2.3526 -0.0040 9 6 8.2947 -2.4449 -0.0040 10 8 8.9670 -1.4320 -0.0035 11 7 8.8945 -3.6518 -0.0044 12 6 8.2316 -4.9735 -0.0056 13 6 9.3951 -6.0118 0.0465 14 1 9.1338 -7.0117 0.3928 15 6 10.4307 -5.2023 0.9065 16 6 10.3623 -3.9243 -0.0105 17 1 11.0076 -3.0862 0.2525 18 6 10.6267 -4.5812 -1.3947 19 7 10.0192 -5.9264 -1.3071 20 6 10.0273 -6.8978 -2.2723 21 1 9.5459 -7.8467 -2.0876 22 6 10.6553 -6.6630 -3.4878 23 7 11.2424 -5.5067 -3.7127 24 14 10.6670 -7.9882 -4.8043 25 1 9.4732 -7.8329 -5.6737 26 1 11.8976 -7.8592 -5.6255 27 1 10.6396 -9.3260 -4.1602 28 7 5.9744 -3.3637 -0.0039 29 7 4.7634 -2.9353 -0.0034 30 1 3.9739 -3.4988 -0.0029 31 6 2.2554 -1.1087 -0.0068 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3634 -0.8902 0.5134 34 1 -0.3633 0.8898 0.5143 35 1 1.9093 2.1332 0.0004 36 1 4.4102 1.3648 -0.0003 37 1 6.4244 -0.1499 -0.0018 38 1 7.5925 -5.0772 0.8713 39 1 7.6473 -5.1031 -0.9165 40 1 10.0706 -5.0109 1.9174 41 1 11.4197 -5.6605 0.9048 42 1 11.6982 -4.6610 -1.5779 43 1 10.1503 -4.0017 -2.1855 44 1 11.6816 -5.3429 -4.5619 45 1 1.9121 -2.1327 -0.0127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032440343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:47 Heat of formation + Delta-G solvation = 159.933807 kcal Electronic energy + Delta-G solvation = -28995.363519 eV Core-core repulsion = 25017.679176 eV Total energy + Delta-G solvation = -3977.684343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.40960 -41.27837 -39.75196 -37.49594 -33.82981 -33.47349 -31.98382 -31.16070 -30.73733 -29.03787 -28.59919 -28.37251 -26.50680 -25.10661 -24.30878 -22.71117 -22.25063 -20.81526 -20.14017 -19.88669 -19.58552 -18.39935 -18.07583 -17.13635 -16.55183 -15.83408 -15.80258 -15.57896 -15.37030 -14.70972 -14.42910 -14.20950 -13.86509 -13.64618 -13.37212 -13.18910 -13.14305 -12.94616 -12.82131 -12.71220 -12.24135 -12.04536 -11.78582 -11.50742 -11.20198 -10.92449 -10.78186 -10.74962 -10.52368 -10.48755 -10.12535 -9.99576 -9.94565 -9.57238 -9.51614 -9.16025 -8.70547 -8.61879 -7.93636 -7.82630 -6.81709 -5.67852 -3.01568 1.41739 1.98463 2.18198 2.51312 2.90307 3.20683 3.42503 3.46823 3.49528 3.54949 3.92444 4.25432 4.49845 4.56097 4.58764 4.63692 4.79582 4.84660 4.89090 5.04517 5.17052 5.34346 5.44944 5.51448 5.65195 5.69115 5.76153 5.78559 5.85662 5.90977 6.15150 6.21538 6.37322 6.43648 6.52721 6.54194 6.57198 6.71117 6.73481 6.77203 6.88910 6.93804 7.11811 7.52140 7.60420 7.81380 8.03924 8.19154 8.24872 8.75231 9.19367 9.80231 10.50525 11.44384 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002496 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.105783 B =11216.508490 C =11990.500294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.448 5.448 3 C -0.013 4.013 4 C -0.168 4.168 5 C -0.101 4.101 6 C 0.090 3.910 7 C -0.168 4.168 8 C 0.003 3.997 9 C 0.612 3.388 10 O -0.550 6.550 11 N -0.593 5.593 12 C 0.098 3.902 13 C 0.137 3.863 14 H 0.105 0.895 15 C -0.150 4.150 16 C 0.099 3.901 17 H 0.115 0.885 18 C 0.174 3.826 19 N -0.598 5.598 20 C -0.227 4.227 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 N -0.246 5.246 29 N -0.389 5.389 30 H 0.440 0.560 31 C -0.005 4.005 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.166 0.834 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.253 0.747 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.895 9.837 11.077 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.124 5.124 3 C -0.142 4.142 4 C -0.193 4.193 5 C -0.110 4.110 6 C -0.035 4.035 7 C -0.196 4.196 8 C -0.157 4.157 9 C 0.398 3.602 10 O -0.427 6.427 11 N -0.325 5.325 12 C -0.027 4.027 13 C 0.028 3.972 14 H 0.123 0.877 15 C -0.189 4.189 16 C -0.003 4.003 17 H 0.133 0.867 18 C 0.049 3.951 19 N -0.322 5.322 20 C -0.355 4.355 21 H 0.098 0.902 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 N -0.082 5.082 29 N -0.104 5.104 30 H 0.284 0.716 31 C -0.137 4.137 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.184 0.816 36 H 0.163 0.837 37 H 0.178 0.822 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.834 9.259 10.794 26.057 hybrid contribution -0.647 -0.094 -0.962 1.163 sum -22.481 9.165 9.832 26.193 Atomic orbital electron populations 1.22057 0.76911 1.04487 1.03422 1.43839 1.06336 1.05958 1.56234 1.21784 0.90157 0.91521 1.10744 1.20879 0.96393 0.93303 1.08677 1.17290 0.88934 0.92818 1.11976 1.19158 0.93795 0.83215 1.07326 1.21553 0.89842 0.99504 1.08698 1.21859 0.94257 0.90382 1.09249 1.16480 0.84104 0.82524 0.77064 1.90744 1.64337 1.34800 1.52859 1.49025 1.08426 1.05182 1.69871 1.23242 0.96187 0.82283 1.00998 1.23251 0.90973 0.95621 0.87356 0.87727 1.24195 1.00996 0.96792 0.96957 1.24345 0.80358 0.96289 0.99293 0.86709 1.21824 0.98195 0.84867 0.90263 1.45242 1.63098 1.13084 1.10814 1.19041 1.30170 0.93689 0.92648 0.90235 1.24813 1.00482 0.97249 0.97905 1.69920 1.40498 1.22139 1.24086 0.86127 0.77038 0.80787 0.81823 1.21749 1.21737 1.20699 1.73691 0.89516 1.26252 1.18721 1.43511 1.06827 1.05173 1.54845 0.71618 1.21721 0.89665 0.91640 1.10716 0.90764 0.89806 0.89642 0.81644 0.83732 0.82190 0.92512 0.90829 0.91613 0.89818 0.92550 0.93468 0.93663 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 11.10 59.84 0.66 0.87 16 2 N -0.45 -3.09 3.14 -124.25 -0.39 -3.49 16 3 C -0.01 -0.10 11.40 -16.80 -0.19 -0.29 16 4 C -0.17 -1.66 10.65 -39.46 -0.42 -2.08 16 5 C -0.10 -1.10 6.12 -105.21 -0.64 -1.75 16 6 C 0.09 1.18 7.13 -82.41 -0.59 0.59 16 7 C -0.17 -2.66 10.57 -39.01 -0.41 -3.08 16 8 C 0.00 0.06 6.98 -82.85 -0.58 -0.52 16 9 C 0.61 12.93 7.90 -12.38 -0.10 12.84 16 10 O -0.55 -12.78 17.26 5.30 0.09 -12.69 16 11 N -0.59 -12.26 2.95 -158.02 -0.47 -12.73 16 12 C 0.10 1.90 4.97 -1.68 -0.01 1.89 16 13 C 0.14 2.71 5.53 -62.55 -0.35 2.37 16 14 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 15 C -0.15 -2.70 6.83 -22.10 -0.15 -2.85 16 16 C 0.10 2.06 5.23 -62.65 -0.33 1.73 16 17 H 0.12 2.28 8.05 -51.93 -0.42 1.86 16 18 C 0.17 4.37 4.75 -1.97 -0.01 4.36 16 19 N -0.60 -15.03 3.02 -156.68 -0.47 -15.51 16 20 C -0.23 -6.25 10.38 -15.06 -0.16 -6.40 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -27.58 10.56 55.49 0.59 -26.99 16 24 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 28 N -0.25 -4.03 9.95 33.37 0.33 -3.70 16 29 N -0.39 -4.90 6.90 33.32 0.23 -4.67 16 30 H 0.44 3.75 8.96 -190.46 -1.71 2.04 16 31 C -0.01 -0.04 11.40 -16.37 -0.19 -0.23 16 32 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.16 2.38 8.06 -52.48 -0.42 1.95 16 38 H 0.06 0.98 7.73 -51.93 -0.40 0.58 16 39 H 0.07 1.60 7.92 -51.93 -0.41 1.19 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 42 H 0.06 1.54 7.46 -51.93 -0.39 1.15 16 43 H 0.05 1.37 7.67 -51.93 -0.40 0.97 16 44 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -36.50 376.07 -10.49 -46.99 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.50 Total: 2.70 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -3.55 Total: 7.14 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -0.18 Total: -67.08 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.50 -10.49 -46.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032440343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.927 kcal (2) G-P(sol) polarization free energy of solvation -36.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds