Wall clock time and date at job start Wed Apr 1 2020 01:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36434 * 125.49469 * 2 1 4 4 C 1.34583 * 108.56215 * 180.02562 * 3 2 1 5 5 C 1.41929 * 107.33109 * 0.02562 * 4 3 2 6 6 C 1.48047 * 126.47208 * 179.97438 * 5 4 3 7 7 C 1.36684 * 126.60051 * 0.02562 * 6 5 4 8 8 C 1.41221 * 105.43951 * 179.97438 * 7 6 5 9 9 C 1.47741 * 126.34550 * 180.02562 * 8 7 6 10 10 O 1.21570 * 119.99184 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00388 * 179.97438 * 9 8 7 12 12 C 1.47863 * 126.94308 * 0.02562 * 11 9 8 13 13 C 1.56024 * 105.10300 * 181.98334 * 12 11 9 14 14 H 1.08996 * 116.25092 * 159.68439 * 13 12 11 15 15 C 1.57085 * 99.60831 * 32.80406 * 13 12 11 16 16 C 1.49290 * 126.94215 * 179.71105 * 11 9 8 17 17 H 1.08995 * 116.15302 * 15.85864 * 16 11 9 18 18 C 1.55478 * 104.35454 * 246.77738 * 16 11 9 19 19 N 1.47869 * 105.17275 * 288.90733 * 18 16 11 20 20 C 1.36939 * 126.94987 * 181.92093 * 19 18 16 21 21 H 1.08002 * 120.00122 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99580 * 0.02562 * 20 19 18 23 23 N 1.31620 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99898 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47193 * 89.99917 * 24 22 20 26 26 H 1.48498 * 109.47026 * 209.99884 * 24 22 20 27 27 H 1.48501 * 109.47047 * 330.00108 * 24 22 20 28 28 N 1.31824 * 107.31981 * 359.97438 * 8 7 6 29 29 N 1.28448 * 110.43367 * 0.02562 * 28 8 7 30 30 H 0.96996 * 125.00213 * 180.02562 * 29 28 8 31 31 C 1.36163 * 125.48729 * 180.35325 * 2 1 3 32 32 H 1.09000 * 109.47299 * 89.97403 * 1 2 3 33 33 H 1.09001 * 109.47290 * 209.97385 * 1 2 3 34 34 H 1.09007 * 109.46933 * 329.97442 * 1 2 3 35 35 H 1.07997 * 125.71832 * 0.02562 * 3 2 1 36 36 H 1.08001 * 126.33390 * 180.02562 * 4 3 2 37 37 H 1.08004 * 127.27635 * 0.02562 * 7 6 5 38 38 H 1.09002 * 110.32149 * 300.88548 * 12 11 9 39 39 H 1.09000 * 110.31647 * 62.97849 * 12 11 9 40 40 H 1.09005 * 112.36162 * 64.27617 * 15 13 12 41 41 H 1.08998 * 112.37201 * 191.71325 * 15 13 12 42 42 H 1.08996 * 110.35311 * 169.94378 * 18 16 11 43 43 H 1.09000 * 110.30215 * 47.84058 * 18 16 11 44 44 H 0.96994 * 119.99801 * 179.97438 * 23 22 20 45 45 H 1.08000 * 125.98031 * 359.96754 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2571 1.1108 0.0000 4 6 3.5446 0.7188 -0.0006 5 6 3.5545 -0.7004 -0.0015 6 6 4.7511 -1.5721 -0.0030 7 6 6.0559 -1.1651 -0.0031 8 6 6.8202 -2.3526 -0.0040 9 6 8.2947 -2.4449 -0.0040 10 8 8.9670 -1.4320 -0.0035 11 7 8.8945 -3.6518 -0.0044 12 6 8.2316 -4.9735 -0.0056 13 6 9.3951 -6.0118 0.0465 14 1 9.1338 -7.0117 0.3928 15 6 10.4307 -5.2023 0.9065 16 6 10.3623 -3.9243 -0.0105 17 1 11.0076 -3.0862 0.2525 18 6 10.6267 -4.5812 -1.3947 19 7 10.0192 -5.9264 -1.3071 20 6 10.0273 -6.8978 -2.2723 21 1 9.5459 -7.8467 -2.0876 22 6 10.6553 -6.6630 -3.4878 23 7 11.2424 -5.5067 -3.7127 24 14 10.6670 -7.9882 -4.8043 25 1 9.4732 -7.8329 -5.6737 26 1 11.8976 -7.8592 -5.6255 27 1 10.6396 -9.3260 -4.1602 28 7 5.9744 -3.3637 -0.0039 29 7 4.7634 -2.9353 -0.0034 30 1 3.9739 -3.4988 -0.0029 31 6 2.2554 -1.1087 -0.0068 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3634 -0.8902 0.5134 34 1 -0.3633 0.8898 0.5143 35 1 1.9093 2.1332 0.0004 36 1 4.4102 1.3648 -0.0003 37 1 6.4244 -0.1499 -0.0018 38 1 7.5925 -5.0772 0.8713 39 1 7.6473 -5.1031 -0.9165 40 1 10.0706 -5.0109 1.9174 41 1 11.4197 -5.6605 0.9048 42 1 11.6982 -4.6610 -1.5779 43 1 10.1503 -4.0017 -2.1855 44 1 11.6816 -5.3429 -4.5619 45 1 1.9121 -2.1327 -0.0127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032440343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:46 Heat of formation + Delta-G solvation = 136.093551 kcal Electronic energy + Delta-G solvation = -28996.397310 eV Core-core repulsion = 25017.679176 eV Total energy + Delta-G solvation = -3978.718134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.55154 -41.93321 -41.42587 -39.20144 -35.46491 -34.44764 -33.53178 -32.66423 -31.67959 -30.68118 -30.23231 -29.39078 -27.03324 -26.94309 -25.95605 -24.37730 -23.23445 -21.91463 -21.42944 -21.17554 -20.80152 -19.86466 -19.07322 -18.74367 -17.98500 -17.37706 -16.94070 -16.87586 -16.43271 -16.12217 -15.84352 -15.65927 -15.02218 -14.95359 -14.69645 -14.65527 -14.09705 -13.84907 -13.67388 -13.53789 -13.33221 -13.31536 -13.22198 -13.09068 -12.87503 -12.83561 -12.69146 -12.31576 -12.14532 -12.05550 -11.93344 -11.73437 -11.51420 -11.23997 -10.87707 -10.72300 -10.40282 -9.52846 -9.33926 -8.88752 -8.77636 -7.82253 -5.18034 0.44551 0.69061 1.46215 1.46399 1.48692 1.57390 1.75881 2.01314 2.15290 2.27261 2.46137 2.49907 3.26873 3.35074 3.45289 3.71491 3.78096 3.92837 4.00698 4.05763 4.12805 4.16289 4.23250 4.31052 4.47284 4.50889 4.60318 4.65436 4.73055 4.78260 4.84244 4.90884 5.00771 5.04241 5.12849 5.15157 5.26618 5.35204 5.36733 5.46452 5.56600 5.66622 5.82560 6.11453 6.11896 6.16193 6.43192 6.59637 6.84075 7.04617 7.14521 7.72468 8.43870 9.29226 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002496 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.105783 B =11216.508490 C =11990.500294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.445 5.445 3 C -0.006 4.006 4 C -0.198 4.198 5 C -0.144 4.144 6 C 0.119 3.881 7 C -0.197 4.197 8 C -0.026 4.026 9 C 0.605 3.395 10 O -0.583 6.583 11 N -0.598 5.598 12 C 0.111 3.889 13 C 0.133 3.867 14 H 0.137 0.863 15 C -0.125 4.125 16 C 0.101 3.899 17 H 0.120 0.880 18 C 0.188 3.812 19 N -0.617 5.617 20 C -0.228 4.228 21 H 0.096 0.904 22 C -0.075 4.075 23 N -0.958 5.958 24 Si 0.979 3.021 25 H -0.292 1.292 26 H -0.300 1.300 27 H -0.260 1.260 28 N -0.256 5.256 29 N -0.367 5.367 30 H 0.460 0.540 31 C 0.012 3.988 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.195 0.805 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.024 0.976 43 H -0.007 1.007 44 H 0.243 0.757 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.744 8.589 12.918 30.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.118 5.118 3 C -0.136 4.136 4 C -0.223 4.223 5 C -0.152 4.152 6 C -0.006 4.006 7 C -0.226 4.226 8 C -0.185 4.185 9 C 0.393 3.607 10 O -0.463 6.463 11 N -0.329 5.329 12 C -0.013 4.013 13 C 0.027 3.973 14 H 0.154 0.846 15 C -0.164 4.164 16 C -0.002 4.002 17 H 0.138 0.862 18 C 0.062 3.938 19 N -0.341 5.341 20 C -0.357 4.357 21 H 0.114 0.886 22 C -0.267 4.267 23 N -0.608 5.608 24 Si 0.808 3.192 25 H -0.220 1.220 26 H -0.227 1.227 27 H -0.185 1.185 28 N -0.093 5.093 29 N -0.085 5.085 30 H 0.308 0.692 31 C -0.123 4.123 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.212 0.788 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.011 0.989 44 H 0.053 0.947 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -25.749 7.970 12.685 29.789 hybrid contribution 0.311 0.378 -1.516 1.594 sum -25.437 8.348 11.168 29.008 Atomic orbital electron populations 1.22393 0.74165 1.06293 1.04657 1.44203 1.07982 1.05282 1.54379 1.22187 0.89450 0.92998 1.08916 1.21052 0.97622 0.93246 1.10365 1.17363 0.89189 0.92998 1.15687 1.19326 0.93755 0.83361 1.04196 1.21624 0.90996 0.98995 1.10936 1.21534 0.93033 0.91921 1.12048 1.16941 0.85447 0.82096 0.76216 1.90699 1.65502 1.35786 1.54324 1.49106 1.08306 1.05727 1.69774 1.23081 0.95871 0.81381 1.01008 1.23664 0.91149 0.97538 0.84976 0.84581 1.24096 1.00780 0.93828 0.97666 1.24257 0.81012 0.97629 0.97321 0.86240 1.21416 0.95665 0.85249 0.91487 1.45510 1.63407 1.12431 1.12760 1.19550 1.28631 0.94484 0.93044 0.88650 1.25704 1.01159 0.99361 1.00482 1.70173 1.42165 1.24383 1.24043 0.85057 0.76159 0.79105 0.78895 1.21981 1.22702 1.18460 1.73562 0.90520 1.25905 1.19299 1.43525 1.06507 1.05444 1.53015 0.69238 1.22151 0.88836 0.93309 1.08001 0.89749 0.88145 0.87884 0.78798 0.84438 0.82538 0.89392 0.93540 0.87993 0.89431 0.95747 0.98900 0.94737 0.79129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.10 11.10 127.77 1.42 1.52 16 2 N -0.44 -4.59 3.14 -547.02 -1.72 -6.31 16 3 C -0.01 -0.08 11.40 83.14 0.95 0.87 16 4 C -0.20 -3.78 10.65 22.35 0.24 -3.55 16 5 C -0.14 -2.93 6.12 -20.24 -0.12 -3.05 16 6 C 0.12 3.08 7.13 40.69 0.29 3.37 16 7 C -0.20 -6.50 10.57 22.64 0.24 -6.26 16 8 C -0.03 -0.99 6.98 42.39 0.30 -0.70 16 9 C 0.60 26.59 7.90 86.76 0.69 27.27 16 10 O -0.58 -28.60 17.26 -3.94 -0.07 -28.67 16 11 N -0.60 -25.14 2.95 -772.12 -2.28 -27.42 16 12 C 0.11 4.20 4.97 87.17 0.43 4.63 16 13 C 0.13 5.05 5.53 46.93 0.26 5.31 16 14 H 0.14 4.34 8.14 -2.39 -0.02 4.32 16 15 C -0.12 -4.24 6.83 33.60 0.23 -4.01 16 16 C 0.10 4.25 5.23 46.87 0.24 4.50 16 17 H 0.12 4.90 8.05 -2.39 -0.02 4.89 16 18 C 0.19 9.96 4.75 86.97 0.41 10.38 16 19 N -0.62 -31.38 3.02 -649.61 -1.96 -33.34 16 20 C -0.23 -12.61 10.38 84.03 0.87 -11.74 16 21 H 0.10 4.85 7.83 -2.91 -0.02 4.83 16 22 C -0.07 -4.35 5.49 84.86 0.47 -3.88 16 23 N -0.96 -60.50 10.56 21.65 0.23 -60.27 16 24 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 27 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 28 N -0.26 -8.26 9.95 -48.33 -0.48 -8.74 16 29 N -0.37 -8.72 6.90 -48.51 -0.33 -9.06 16 30 H 0.46 6.62 8.96 -220.01 -1.97 4.65 16 31 C 0.01 0.15 11.40 83.54 0.95 1.11 16 32 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.10 -0.15 8.14 -2.38 -0.02 -0.17 16 35 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.16 5.05 8.06 -2.91 -0.02 5.02 16 38 H 0.09 2.81 7.73 -2.39 -0.02 2.79 16 39 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 40 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 41 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.02 1.42 7.46 -2.39 -0.02 1.41 16 43 H -0.01 -0.46 7.67 -2.39 -0.02 -0.47 16 44 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -85.20 376.07 2.33 -82.88 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -0.95 Total: 16.43 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 7.86 Total: 25.77 kcal Atomic # 7 Polarization: -138.58 SS G_CDS: -6.55 Total: -145.13 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.07 Total: -28.67 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -85.20 2.33 -82.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032440343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.970 kcal (2) G-P(sol) polarization free energy of solvation -85.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds