Wall clock time and date at job start Wed Apr 1 2020 00:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 109.46857 * 2 1 4 4 N 1.40225 * 126.66022 * 269.97618 * 3 2 1 5 5 N 1.28636 * 109.51086 * 180.02562 * 4 3 2 6 6 C 1.35428 * 110.13184 * 359.97438 * 5 4 3 7 7 C 1.39796 * 133.05039 * 179.97438 * 6 5 4 8 8 C 1.38877 * 119.56257 * 179.73849 * 7 6 5 9 9 C 1.47721 * 119.86261 * 180.28551 * 8 7 6 10 10 O 1.21570 * 119.99701 * 172.35108 * 9 8 7 11 11 N 1.34775 * 119.99862 * 352.34365 * 9 8 7 12 12 C 1.47867 * 126.94671 * 4.65551 * 11 9 8 13 13 C 1.56021 * 105.10381 * 181.97457 * 12 11 9 14 14 H 1.08997 * 116.24526 * 159.67992 * 13 12 11 15 15 C 1.57085 * 99.60460 * 32.80907 * 13 12 11 16 16 C 1.49296 * 126.94098 * 184.33427 * 11 9 8 17 17 H 1.09002 * 116.15016 * 15.87070 * 16 11 9 18 18 C 1.55484 * 104.35476 * 246.78379 * 16 11 9 19 19 N 1.47864 * 105.17225 * 288.90443 * 18 16 11 20 20 C 1.36938 * 126.94612 * 181.92156 * 19 18 16 21 21 H 1.07993 * 119.99964 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99668 * 0.02562 * 20 19 18 23 23 N 1.31611 * 120.00287 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99565 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47268 * 60.00243 * 24 22 20 26 26 H 1.48507 * 109.47063 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47161 * 300.00131 * 24 22 20 28 28 C 1.40258 * 120.27081 * 0.57979 * 8 7 6 29 29 C 1.36256 * 120.45383 * 359.42920 * 28 8 7 30 30 C 1.37264 * 126.65284 * 90.00102 * 3 2 1 31 31 H 1.09000 * 109.47101 * 59.99902 * 1 2 3 32 32 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47073 * 299.99965 * 1 2 3 34 34 H 1.09000 * 109.47274 * 240.00549 * 2 1 3 35 35 H 1.09000 * 109.47101 * 120.00098 * 2 1 3 36 36 H 1.08007 * 120.21447 * 0.02562 * 7 6 5 37 37 H 1.08992 * 110.31549 * 300.88192 * 12 11 9 38 38 H 1.09000 * 110.31568 * 62.97159 * 12 11 9 39 39 H 1.08992 * 112.37019 * 64.27041 * 15 13 12 40 40 H 1.09007 * 112.36632 * 191.71647 * 15 13 12 41 41 H 1.09003 * 110.34704 * 169.94381 * 18 16 11 42 42 H 1.09004 * 110.30035 * 47.84535 * 18 16 11 43 43 H 0.97000 * 120.00368 * 179.97438 * 23 22 20 44 44 H 1.07999 * 119.76936 * 179.70370 * 28 8 7 45 45 H 1.07998 * 119.92409 * 180.25225 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2978 2.1705 -1.1249 5 7 2.7079 3.3293 -0.7456 6 6 2.7306 3.3960 0.6069 7 6 3.0876 4.4045 1.5067 8 6 2.9971 4.1679 2.8722 9 6 3.3666 5.2311 3.8290 10 8 3.1581 5.0789 5.0170 11 7 3.9349 6.3695 3.3848 12 6 4.1695 6.7553 1.9767 13 6 4.8954 8.1345 2.0486 14 1 5.4554 8.4312 1.1618 15 6 5.7091 7.9335 3.3771 16 6 4.4490 7.4990 4.2149 17 1 4.6022 7.2866 5.2730 18 6 3.4960 8.6830 3.8874 19 7 3.8342 9.0806 2.5039 20 6 3.2849 10.1089 1.7855 21 1 3.6178 10.3006 0.7762 22 6 2.3002 10.9048 2.3546 23 7 1.8942 10.6708 3.5844 24 14 1.5515 12.3079 1.3748 25 1 0.9122 11.7688 0.1476 26 1 0.5306 12.9999 2.2021 27 1 2.6166 13.2708 0.9960 28 6 2.5620 2.9218 3.3466 29 6 2.2129 1.9345 2.4748 30 6 2.2915 2.1539 1.1012 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.4272 5.3628 1.1423 37 1 4.8038 6.0190 1.4833 38 1 3.2213 6.8522 1.4480 39 1 6.4497 7.1382 3.2937 40 1 6.1468 8.8634 3.7402 41 1 3.6718 9.5119 4.5731 42 1 2.4568 8.3591 3.9448 43 1 1.2064 11.2271 3.9823 44 1 2.4992 2.7450 4.4102 45 1 1.8752 0.9795 2.8494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032776833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:15 Heat of formation + Delta-G solvation = 163.416740 kcal Electronic energy + Delta-G solvation = -29735.493969 eV Core-core repulsion = 25757.960657 eV Total energy + Delta-G solvation = -3977.533312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.23792 -40.34125 -38.35407 -36.87677 -35.72960 -33.82352 -32.26078 -31.23235 -30.51718 -29.99614 -28.84863 -28.53787 -25.53329 -24.81044 -24.61500 -23.47991 -22.99924 -21.26359 -20.65256 -19.90096 -18.92398 -18.13337 -17.35638 -17.09083 -16.38550 -16.08920 -15.68083 -15.22199 -15.08987 -14.89455 -14.54735 -14.04805 -13.97540 -13.67340 -13.44902 -13.21267 -13.15802 -12.61217 -12.50176 -12.30745 -12.08032 -11.97176 -11.90184 -11.71729 -11.60658 -11.32532 -11.05112 -10.98568 -10.90229 -10.84526 -10.62350 -10.54802 -10.18532 -10.07701 -9.67396 -9.60390 -9.03124 -8.70163 -8.50875 -8.07239 -6.93798 -5.77064 -3.11907 0.32654 0.80802 1.82989 2.05316 2.93836 3.26062 3.38882 3.43384 3.44769 3.77558 3.86421 4.03377 4.38647 4.41927 4.45050 4.58841 4.68190 4.78579 4.81975 4.97232 5.04663 5.08948 5.14362 5.23588 5.32826 5.36293 5.52974 5.57120 5.58779 5.70083 5.75129 5.81545 5.82610 5.97188 6.03485 6.12484 6.22680 6.30569 6.37750 6.42000 6.50420 6.56744 6.64433 7.41225 7.46941 7.71638 7.83551 7.98447 8.09454 8.48452 9.09636 9.70589 10.38606 11.34890 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.003116 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.676871 B = 8982.616460 C = 9910.383077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.129 3.871 3 N -0.398 5.398 4 N -0.013 5.013 5 N -0.206 5.206 6 C -0.028 4.028 7 C -0.025 4.025 8 C -0.138 4.138 9 C 0.574 3.426 10 O -0.550 6.550 11 N -0.598 5.598 12 C 0.068 3.932 13 C 0.140 3.860 14 H 0.110 0.890 15 C -0.150 4.150 16 C 0.100 3.900 17 H 0.116 0.884 18 C 0.172 3.828 19 N -0.596 5.596 20 C -0.234 4.234 21 H 0.081 0.919 22 C -0.004 4.004 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.284 1.284 28 C -0.014 4.014 29 C -0.137 4.137 30 C 0.104 3.896 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.178 0.822 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.255 0.745 44 H 0.149 0.851 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -21.227 -3.652 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.008 3.992 3 N -0.193 5.193 4 N 0.007 4.993 5 N -0.085 5.085 6 C -0.151 4.151 7 C -0.047 4.047 8 C -0.144 4.144 9 C 0.364 3.636 10 O -0.430 6.430 11 N -0.330 5.330 12 C -0.056 4.056 13 C 0.031 3.969 14 H 0.127 0.873 15 C -0.190 4.190 16 C -0.002 4.002 17 H 0.134 0.866 18 C 0.047 3.953 19 N -0.320 5.320 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.565 5.565 24 Si 0.743 3.257 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.036 4.036 29 C -0.159 4.159 30 C -0.018 4.018 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.195 0.805 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.167 0.833 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.450 -21.187 -4.528 21.803 hybrid contribution -0.800 0.393 0.426 0.988 sum 1.649 -20.793 -4.102 21.258 Atomic orbital electron populations 1.22224 0.93740 1.03499 1.03693 1.21812 0.95642 0.76773 1.05022 1.50315 1.52293 1.13206 1.03453 1.81598 1.13404 0.96531 1.07735 1.74864 1.11976 1.11192 1.10499 1.19852 1.09928 0.95172 0.90150 1.22244 0.92162 0.99434 0.90835 1.19808 1.06125 0.95797 0.92706 1.17579 0.77818 0.80802 0.87433 1.90746 1.55642 1.80057 1.16540 1.49096 1.58062 1.16965 1.08876 1.23756 1.00891 0.98795 0.82197 1.23241 0.90055 0.87676 0.95904 0.87258 1.24216 0.95727 1.01028 0.97996 1.24365 0.94995 0.85602 0.95210 0.86596 1.21855 0.95416 0.91663 0.86394 1.45249 1.41577 1.33219 1.11992 1.19005 1.15937 1.04865 0.96359 0.90105 1.24815 0.99151 0.99561 0.96594 1.69898 1.32568 1.40796 1.13258 0.86198 0.78742 0.81919 0.78866 1.21103 1.21649 1.21091 1.20880 0.91680 0.90338 1.00730 1.19664 1.07076 1.01211 0.87966 1.19540 0.99544 0.92106 0.90615 0.91365 0.89984 0.91667 0.87976 0.88478 0.80512 0.91708 0.89961 0.91464 0.89577 0.92426 0.93316 0.93509 0.83304 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.24 37.16 0.38 -0.59 16 2 C 0.13 0.80 7.21 -4.04 -0.03 0.77 16 3 N -0.40 -4.41 3.71 -58.66 -0.22 -4.63 16 4 N -0.01 -0.18 13.72 60.35 0.83 0.65 16 5 N -0.21 -3.20 12.40 32.15 0.40 -2.80 16 6 C -0.03 -0.41 7.26 -84.76 -0.62 -1.02 16 7 C -0.02 -0.37 8.79 -38.76 -0.34 -0.71 16 8 C -0.14 -2.08 5.87 -105.03 -0.62 -2.70 16 9 C 0.57 10.37 7.84 -12.39 -0.10 10.28 16 10 O -0.55 -11.28 16.71 5.30 0.09 -11.19 16 11 N -0.60 -10.74 2.95 -159.21 -0.47 -11.21 16 12 C 0.07 1.13 4.24 -1.68 -0.01 1.12 16 13 C 0.14 2.50 5.53 -62.55 -0.35 2.16 16 14 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 15 C -0.15 -2.43 6.83 -22.10 -0.15 -2.58 16 16 C 0.10 1.88 5.22 -62.64 -0.33 1.55 16 17 H 0.12 2.09 8.07 -51.93 -0.42 1.67 16 18 C 0.17 4.03 4.75 -1.97 -0.01 4.02 16 19 N -0.60 -13.98 3.02 -156.68 -0.47 -14.46 16 20 C -0.23 -6.13 10.37 -15.06 -0.16 -6.29 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -26.53 10.56 55.49 0.59 -25.95 16 24 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C -0.01 -0.17 9.51 -39.54 -0.38 -0.55 16 29 C -0.14 -1.43 9.97 -39.89 -0.40 -1.83 16 30 C 0.10 1.29 6.93 -84.10 -0.58 0.70 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.18 2.61 2.81 -54.08 -0.15 2.46 16 37 H 0.07 0.88 6.77 -51.93 -0.35 0.53 16 38 H 0.08 1.50 6.94 -51.93 -0.36 1.14 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.06 1.49 7.46 -51.93 -0.39 1.10 16 42 H 0.05 1.33 7.67 -51.93 -0.40 0.93 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.15 1.70 7.64 -52.49 -0.40 1.30 16 45 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -33.22 366.69 -8.35 -41.57 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.82 Total: 1.72 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -3.77 Total: 4.13 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.65 Total: -58.40 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.22 -8.35 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032776833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.987 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds