Wall clock time and date at job start Wed Apr 1 2020 00:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 109.46857 * 2 1 4 4 N 1.40225 * 126.66022 * 269.97618 * 3 2 1 5 5 N 1.28636 * 109.51086 * 180.02562 * 4 3 2 6 6 C 1.35428 * 110.13184 * 359.97438 * 5 4 3 7 7 C 1.39796 * 133.05039 * 179.97438 * 6 5 4 8 8 C 1.38877 * 119.56257 * 179.73849 * 7 6 5 9 9 C 1.47721 * 119.86261 * 180.28551 * 8 7 6 10 10 O 1.21570 * 119.99701 * 172.35108 * 9 8 7 11 11 N 1.34775 * 119.99862 * 352.34365 * 9 8 7 12 12 C 1.47867 * 126.94671 * 4.65551 * 11 9 8 13 13 C 1.56021 * 105.10381 * 181.97457 * 12 11 9 14 14 H 1.08997 * 116.24526 * 159.67992 * 13 12 11 15 15 C 1.57085 * 99.60460 * 32.80907 * 13 12 11 16 16 C 1.49296 * 126.94098 * 184.33427 * 11 9 8 17 17 H 1.09002 * 116.15016 * 15.87070 * 16 11 9 18 18 C 1.55484 * 104.35476 * 246.78379 * 16 11 9 19 19 N 1.47864 * 105.17225 * 288.90443 * 18 16 11 20 20 C 1.36938 * 126.94612 * 181.92156 * 19 18 16 21 21 H 1.07993 * 119.99964 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99668 * 0.02562 * 20 19 18 23 23 N 1.31611 * 120.00287 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99565 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47268 * 60.00243 * 24 22 20 26 26 H 1.48507 * 109.47063 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47161 * 300.00131 * 24 22 20 28 28 C 1.40258 * 120.27081 * 0.57979 * 8 7 6 29 29 C 1.36256 * 120.45383 * 359.42920 * 28 8 7 30 30 C 1.37264 * 126.65284 * 90.00102 * 3 2 1 31 31 H 1.09000 * 109.47101 * 59.99902 * 1 2 3 32 32 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47073 * 299.99965 * 1 2 3 34 34 H 1.09000 * 109.47274 * 240.00549 * 2 1 3 35 35 H 1.09000 * 109.47101 * 120.00098 * 2 1 3 36 36 H 1.08007 * 120.21447 * 0.02562 * 7 6 5 37 37 H 1.08992 * 110.31549 * 300.88192 * 12 11 9 38 38 H 1.09000 * 110.31568 * 62.97159 * 12 11 9 39 39 H 1.08992 * 112.37019 * 64.27041 * 15 13 12 40 40 H 1.09007 * 112.36632 * 191.71647 * 15 13 12 41 41 H 1.09003 * 110.34704 * 169.94381 * 18 16 11 42 42 H 1.09004 * 110.30035 * 47.84535 * 18 16 11 43 43 H 0.97000 * 120.00368 * 179.97438 * 23 22 20 44 44 H 1.07999 * 119.76936 * 179.70370 * 28 8 7 45 45 H 1.07998 * 119.92409 * 180.25225 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2978 2.1705 -1.1249 5 7 2.7079 3.3293 -0.7456 6 6 2.7306 3.3960 0.6069 7 6 3.0876 4.4045 1.5067 8 6 2.9971 4.1679 2.8722 9 6 3.3666 5.2311 3.8290 10 8 3.1581 5.0789 5.0170 11 7 3.9349 6.3695 3.3848 12 6 4.1695 6.7553 1.9767 13 6 4.8954 8.1345 2.0486 14 1 5.4554 8.4312 1.1618 15 6 5.7091 7.9335 3.3771 16 6 4.4490 7.4990 4.2149 17 1 4.6022 7.2866 5.2730 18 6 3.4960 8.6830 3.8874 19 7 3.8342 9.0806 2.5039 20 6 3.2849 10.1089 1.7855 21 1 3.6178 10.3006 0.7762 22 6 2.3002 10.9048 2.3546 23 7 1.8942 10.6708 3.5844 24 14 1.5515 12.3079 1.3748 25 1 0.9122 11.7688 0.1476 26 1 0.5306 12.9999 2.2021 27 1 2.6166 13.2708 0.9960 28 6 2.5620 2.9218 3.3466 29 6 2.2129 1.9345 2.4748 30 6 2.2915 2.1539 1.1012 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.4272 5.3628 1.1423 37 1 4.8038 6.0190 1.4833 38 1 3.2213 6.8522 1.4480 39 1 6.4497 7.1382 3.2937 40 1 6.1468 8.8634 3.7402 41 1 3.6718 9.5119 4.5731 42 1 2.4568 8.3591 3.9448 43 1 1.2064 11.2271 3.9823 44 1 2.4992 2.7450 4.4102 45 1 1.8752 0.9795 2.8494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032776833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:14 Heat of formation + Delta-G solvation = 141.785262 kcal Electronic energy + Delta-G solvation = -29736.431980 eV Core-core repulsion = 25757.960657 eV Total energy + Delta-G solvation = -3978.471323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.22760 -41.78759 -39.72387 -38.07889 -36.49425 -35.55850 -33.72687 -32.41495 -31.52651 -31.16688 -30.34164 -30.06627 -27.12823 -26.13898 -25.55152 -24.64069 -24.23971 -22.38028 -21.88670 -21.33879 -20.42378 -19.35607 -18.66276 -18.25966 -17.78300 -17.33369 -16.96397 -16.63692 -16.23726 -16.12673 -15.71010 -15.53296 -15.11102 -14.90478 -14.76952 -14.32174 -14.06267 -13.79301 -13.58842 -13.43481 -13.34522 -13.24695 -13.10476 -13.04140 -12.86872 -12.77585 -12.67013 -12.38801 -12.20109 -12.15235 -12.06712 -11.92617 -11.75802 -11.55592 -11.50189 -11.11034 -10.67874 -10.07611 -9.60770 -9.44000 -8.88941 -7.83394 -5.18757 -0.68208 -0.25274 1.03499 1.06498 1.47308 1.49930 1.55655 1.69549 1.89424 2.49280 2.62242 2.85246 3.27262 3.32873 3.39658 3.45496 3.56137 3.75066 3.81739 3.89072 3.97770 4.00097 4.05585 4.15307 4.23189 4.28199 4.31484 4.46368 4.58553 4.61437 4.71650 4.77939 4.84586 4.87290 4.89476 5.03552 5.05249 5.13993 5.16139 5.18199 5.24998 5.36825 5.46039 5.55627 5.63266 5.67992 6.11417 6.56820 6.82654 7.04463 7.06543 7.72226 8.42127 9.27416 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.003116 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.676871 B = 8982.616460 C = 9910.383077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.115 3.885 3 N -0.381 5.381 4 N -0.026 5.026 5 N -0.239 5.239 6 C -0.048 4.048 7 C -0.031 4.031 8 C -0.147 4.147 9 C 0.570 3.430 10 O -0.581 6.581 11 N -0.602 5.602 12 C 0.079 3.921 13 C 0.133 3.867 14 H 0.137 0.863 15 C -0.126 4.126 16 C 0.104 3.896 17 H 0.121 0.879 18 C 0.185 3.815 19 N -0.616 5.616 20 C -0.231 4.231 21 H 0.095 0.905 22 C -0.070 4.070 23 N -0.955 5.955 24 Si 0.975 3.025 25 H -0.279 1.279 26 H -0.303 1.303 27 H -0.273 1.273 28 C -0.023 4.023 29 C -0.109 4.109 30 C 0.101 3.899 31 H 0.048 0.952 32 H 0.112 0.888 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.172 0.828 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.022 0.978 42 H -0.004 1.004 43 H 0.244 0.756 44 H 0.159 0.841 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -24.508 -4.906 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.177 5.177 4 N -0.006 5.006 5 N -0.117 5.117 6 C -0.172 4.172 7 C -0.053 4.053 8 C -0.153 4.153 9 C 0.361 3.639 10 O -0.463 6.463 11 N -0.334 5.334 12 C -0.045 4.045 13 C 0.027 3.973 14 H 0.155 0.845 15 C -0.165 4.165 16 C 0.002 3.998 17 H 0.139 0.861 18 C 0.059 3.941 19 N -0.340 5.340 20 C -0.360 4.360 21 H 0.112 0.888 22 C -0.262 4.262 23 N -0.605 5.605 24 Si 0.804 3.196 25 H -0.206 1.206 26 H -0.229 1.229 27 H -0.199 1.199 28 C -0.045 4.045 29 C -0.131 4.131 30 C -0.022 4.022 31 H 0.067 0.933 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.188 0.812 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.040 0.960 42 H 0.015 0.985 43 H 0.053 0.947 44 H 0.177 0.823 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.637 -24.512 -5.851 25.462 hybrid contribution -1.200 1.233 0.756 1.880 sum 2.436 -23.279 -5.095 23.954 Atomic orbital electron populations 1.22216 0.93149 1.05038 1.02336 1.22396 0.96077 0.74391 1.07545 1.50730 1.50470 1.14237 1.02249 1.81501 1.13466 0.96599 1.09002 1.74847 1.13576 1.12178 1.11145 1.20013 1.10714 0.96292 0.90140 1.22054 0.93074 0.99422 0.90782 1.19654 1.07565 0.96003 0.92100 1.18090 0.76941 0.81237 0.87625 1.90716 1.56816 1.80813 1.17995 1.49158 1.58166 1.16772 1.09272 1.23642 1.00424 0.98949 0.81502 1.23678 0.89182 0.86700 0.97755 0.84507 1.24116 0.94887 1.02130 0.95375 1.24216 0.95153 0.84169 0.96306 0.86080 1.21456 0.93913 0.92343 0.86405 1.45490 1.42914 1.33661 1.11973 1.19490 1.14945 1.04675 0.96878 0.88758 1.25628 1.00541 1.02467 0.97596 1.70141 1.33385 1.41895 1.15038 0.85197 0.77782 0.79306 0.77322 1.20557 1.22930 1.19857 1.21020 0.92113 0.89718 1.01652 1.20029 1.04289 1.02230 0.86510 1.19789 0.99238 0.91538 0.91644 0.93288 0.86987 0.92439 0.86362 0.85143 0.81189 0.87768 0.92121 0.87629 0.89686 0.96003 0.98539 0.94721 0.82302 0.80176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 71.98 0.74 -0.59 16 2 C 0.11 0.96 7.21 86.38 0.62 1.59 16 3 N -0.38 -7.41 3.71 -339.50 -1.26 -8.67 16 4 N -0.03 -0.69 13.72 37.02 0.51 -0.18 16 5 N -0.24 -7.29 12.40 -52.20 -0.65 -7.93 16 6 C -0.05 -1.35 7.26 39.57 0.29 -1.06 16 7 C -0.03 -0.91 8.79 22.80 0.20 -0.71 16 8 C -0.15 -4.31 5.87 -20.13 -0.12 -4.43 16 9 C 0.57 20.65 7.84 86.75 0.68 21.33 16 10 O -0.58 -24.16 16.71 -3.94 -0.07 -24.23 16 11 N -0.60 -21.63 2.95 -775.91 -2.29 -23.93 16 12 C 0.08 2.53 4.24 87.16 0.37 2.90 16 13 C 0.13 4.57 5.53 46.93 0.26 4.83 16 14 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 15 C -0.13 -3.83 6.83 33.60 0.23 -3.60 16 16 C 0.10 3.94 5.22 46.87 0.24 4.19 16 17 H 0.12 4.44 8.07 -2.39 -0.02 4.42 16 18 C 0.18 9.15 4.75 86.97 0.41 9.56 16 19 N -0.62 -29.46 3.02 -649.61 -1.96 -31.42 16 20 C -0.23 -12.30 10.37 84.03 0.87 -11.43 16 21 H 0.09 4.65 7.83 -2.91 -0.02 4.62 16 22 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 23 N -0.96 -58.40 10.56 21.65 0.23 -58.17 16 24 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 28 C -0.02 -0.52 9.51 22.30 0.21 -0.30 16 29 C -0.11 -1.88 9.97 22.07 0.22 -1.66 16 30 C 0.10 2.24 6.93 39.16 0.27 2.51 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.17 4.99 2.81 -4.41 -0.01 4.97 16 37 H 0.10 2.59 6.77 -2.39 -0.02 2.58 16 38 H 0.06 2.25 6.94 -2.39 -0.02 2.23 16 39 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.08 2.65 8.14 -2.38 -0.02 2.64 16 41 H 0.02 1.21 7.46 -2.39 -0.02 1.20 16 42 H 0.00 -0.21 7.67 -2.38 -0.02 -0.23 16 43 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.16 3.29 7.64 -2.91 -0.02 3.26 16 45 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -78.23 366.69 3.53 -74.69 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.03 Total: 12.35 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 5.97 Total: 19.67 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -5.42 Total: -130.30 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.07 Total: -24.23 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -78.23 3.53 -74.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032776833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.479 kcal (2) G-P(sol) polarization free energy of solvation -78.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds