Wall clock time and date at job start Wed Apr 1 2020 01:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46914 * 2 1 4 4 C 1.34776 * 119.99882 * 131.56733 * 3 2 1 5 5 O 1.21556 * 119.99747 * 183.22044 * 4 3 2 6 6 C 1.47839 * 120.00182 * 3.22233 * 4 3 2 7 7 C 1.40597 * 120.27797 * 316.41352 * 6 4 3 8 8 N 1.30819 * 121.52049 * 179.69953 * 7 6 4 9 9 C 1.33758 * 121.79950 * 0.27874 * 8 7 6 10 10 N 1.33885 * 120.62392 * 180.02562 * 9 8 7 11 11 C 1.31338 * 119.85069 * 179.97438 * 10 9 8 12 12 C 1.39761 * 120.77131 * 359.97438 * 11 10 9 13 13 N 1.31309 * 120.55745 * 359.97438 * 12 11 10 14 14 C 1.33669 * 119.70425 * 0.04200 * 13 12 11 15 15 C 1.38912 * 120.28228 * 136.69185 * 6 4 3 16 16 C 1.46498 * 119.99635 * 311.56524 * 3 2 1 17 17 H 1.08998 * 110.64432 * 20.60603 * 16 3 2 18 18 C 1.55160 * 110.71947 * 257.26510 * 16 3 2 19 19 C 1.54911 * 101.58069 * 277.14008 * 18 16 3 20 20 N 1.47421 * 104.83601 * 322.99025 * 19 18 16 21 21 C 1.36931 * 125.64905 * 204.16301 * 20 19 18 22 22 H 1.08001 * 119.99923 * 179.97438 * 21 20 19 23 23 C 1.38810 * 120.00095 * 359.95946 * 21 20 19 24 24 N 1.31619 * 120.00043 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00066 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47514 * 59.99876 * 25 23 21 27 27 H 1.48498 * 109.47196 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47077 * 299.99946 * 25 23 21 29 29 C 1.47026 * 108.70115 * 24.13021 * 20 19 18 30 30 H 1.09003 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47060 * 299.99736 * 1 2 3 32 32 H 1.08996 * 109.47056 * 60.00432 * 1 2 3 33 33 H 1.08998 * 109.47289 * 239.99620 * 2 1 3 34 34 H 1.09002 * 109.46700 * 119.99794 * 2 1 3 35 35 H 1.07999 * 119.23967 * 359.97438 * 7 6 4 36 36 H 1.07993 * 119.61282 * 179.97438 * 11 10 9 37 37 H 1.07998 * 119.72156 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.99736 * 359.97438 * 15 6 4 39 39 H 1.08991 * 111.00455 * 35.21924 * 18 16 3 40 40 H 1.08995 * 111.00283 * 159.06922 * 18 16 3 41 41 H 1.08999 * 110.36246 * 204.14996 * 19 18 16 42 42 H 1.09002 * 110.45504 * 81.87962 * 19 18 16 43 43 H 0.97004 * 120.00103 * 180.02562 * 24 23 21 44 44 H 1.08996 * 109.87828 * 239.52219 * 29 20 19 45 45 H 1.09000 * 109.88368 * 118.35627 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.9731 1.7584 0.8733 5 8 3.3366 2.9177 0.9131 6 6 3.5784 0.7623 1.7827 7 6 2.7687 -0.1769 2.4452 8 7 3.2790 -1.0726 3.2506 9 6 4.5935 -1.1383 3.4895 10 7 5.0907 -2.0652 4.3178 11 6 6.3839 -2.1162 4.5411 12 6 7.2525 -1.2125 3.9228 13 7 6.7900 -0.2947 3.1055 14 6 5.4773 -0.2239 2.8637 15 6 4.9512 0.7501 1.9943 16 6 1.4688 2.3523 -0.9493 17 1 0.4973 2.0226 -1.3173 18 6 2.4538 2.5891 -2.1245 19 6 3.4214 3.6334 -1.5138 20 7 2.5655 4.5013 -0.6845 21 6 2.8449 5.7942 -0.3305 22 1 2.1498 6.3483 0.2828 23 6 4.0217 6.3924 -0.7595 24 7 4.8687 5.7171 -1.5071 25 14 4.4032 8.1559 -0.2759 26 1 4.4663 8.2609 1.2041 27 1 5.7095 8.5571 -0.8573 28 1 3.3368 9.0521 -0.7906 29 6 1.3619 3.7489 -0.3013 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.7012 -0.1613 2.2822 36 1 6.7808 -2.8652 5.2103 37 1 8.3131 -1.2701 4.1183 38 1 5.5963 1.4624 1.5016 39 1 2.9819 1.6712 -2.3826 40 1 1.9357 2.9971 -2.9923 41 1 3.8996 4.2142 -2.3025 42 1 4.1733 3.1411 -0.8970 43 1 5.6913 6.1351 -1.8066 44 1 0.4723 4.2607 -0.6683 45 1 1.3152 3.6516 0.7834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033861091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:35 Heat of formation + Delta-G solvation = 137.531738 kcal Electronic energy + Delta-G solvation = -30407.995747 eV Core-core repulsion = 26429.339977 eV Total energy + Delta-G solvation = -3978.655770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.95847 -40.36238 -38.42222 -36.43820 -35.54529 -35.20814 -32.40279 -32.05449 -31.31657 -30.19495 -28.94185 -27.49359 -26.24901 -25.32091 -24.36224 -23.25574 -22.96714 -21.71090 -20.18503 -19.80748 -18.84764 -18.13951 -17.61609 -16.80499 -16.52971 -16.02789 -15.77079 -15.43591 -15.19314 -14.86692 -14.48473 -14.27423 -13.88480 -13.64534 -13.47577 -13.30724 -13.01074 -12.97154 -12.47677 -12.17815 -12.04128 -11.99170 -11.91772 -11.66852 -11.44266 -11.27177 -10.91002 -10.83769 -10.72304 -10.68710 -10.07744 -10.00798 -9.71133 -9.50116 -9.43996 -9.36480 -9.20144 -8.89575 -8.48503 -8.08590 -6.52815 -5.42536 -2.78861 -0.28078 -0.02296 1.55367 2.20711 2.97415 3.17964 3.25770 3.52035 3.56003 3.57316 3.72047 3.74318 3.78374 4.25326 4.35461 4.46176 4.62271 4.67488 4.72813 4.79810 4.99888 5.03056 5.20651 5.31108 5.43116 5.52617 5.54736 5.62559 5.67152 5.69196 5.76059 5.85344 5.99814 6.04565 6.07485 6.31039 6.49886 6.60840 6.63996 6.69157 6.82523 7.16211 7.16796 7.59192 7.64532 7.77370 7.84523 8.05334 8.56386 8.61406 9.45592 10.07490 10.74204 11.61842 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003843 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.830282 B = 7284.064664 C = 9045.168588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 N -0.600 5.600 4 C 0.530 3.470 5 O -0.430 6.430 6 C -0.159 4.159 7 C 0.181 3.819 8 N -0.460 5.460 9 C 0.264 3.736 10 N -0.419 5.419 11 C 0.107 3.893 12 C 0.070 3.930 13 N -0.403 5.403 14 C 0.026 3.974 15 C 0.027 3.973 16 C 0.133 3.867 17 H 0.089 0.911 18 C -0.161 4.161 19 C 0.161 3.839 20 N -0.578 5.578 21 C -0.200 4.200 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.924 5.924 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.288 1.288 29 C 0.141 3.859 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.186 0.814 36 H 0.183 0.817 37 H 0.182 0.818 38 H 0.164 0.836 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.020 0.980 43 H 0.247 0.753 44 H 0.021 0.979 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 -19.538 6.601 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.042 4.042 3 N -0.337 5.337 4 C 0.313 3.687 5 O -0.298 6.298 6 C -0.166 4.166 7 C 0.004 3.996 8 N -0.169 5.169 9 C 0.025 3.975 10 N -0.134 5.134 11 C -0.073 4.073 12 C -0.106 4.106 13 N -0.118 5.118 14 C -0.100 4.100 15 C -0.001 4.001 16 C 0.030 3.970 17 H 0.107 0.893 18 C -0.201 4.201 19 C 0.036 3.964 20 N -0.303 5.303 21 C -0.329 4.329 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.574 5.574 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.215 1.215 29 C 0.014 3.986 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.202 0.798 36 H 0.200 0.800 37 H 0.199 0.801 38 H 0.182 0.818 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.038 0.962 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.381 -19.246 6.966 20.606 hybrid contribution 0.875 1.224 0.018 1.505 sum -1.506 -18.023 6.984 19.387 Atomic orbital electron populations 1.22147 0.94976 1.02425 1.03215 1.22099 0.95308 0.83581 1.03200 1.47741 1.39610 1.10403 1.35944 1.17947 0.81055 0.88093 0.81590 1.91289 1.57706 1.16000 1.64851 1.21441 0.94747 0.98982 1.01466 1.23537 1.01018 0.87075 0.87941 1.67499 1.11241 1.22762 1.15366 1.20038 0.90692 0.92395 0.94393 1.68301 1.14270 1.18868 1.11936 1.24283 0.88708 0.97658 0.96633 1.24227 1.02499 0.91135 0.92776 1.68641 1.12515 1.19013 1.11613 1.20200 0.91324 0.98376 1.00111 1.21780 0.94093 0.93306 0.90917 1.22171 0.96169 0.89119 0.89534 0.89311 1.23509 0.99267 1.00475 0.96802 1.21898 0.90470 0.89399 0.94621 1.44126 1.17997 1.09773 1.58365 1.18926 1.02538 0.86378 1.25056 0.91173 1.24648 0.96981 0.98091 1.01200 1.69796 1.11602 1.35215 1.40806 0.86237 0.77104 0.84842 0.77830 1.21611 1.21829 1.21514 1.21361 0.91349 0.88901 0.96953 0.91362 0.91851 0.91548 0.91693 0.89185 0.79766 0.80003 0.80091 0.81797 0.92567 0.91438 0.88486 0.96248 0.94225 0.96188 0.95653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.68 37.16 0.36 -1.03 16 2 C 0.08 0.83 5.98 -4.04 -0.02 0.81 16 3 N -0.60 -8.88 2.75 -165.13 -0.45 -9.33 16 4 C 0.53 9.30 6.34 -12.33 -0.08 9.22 16 5 O -0.43 -9.98 10.61 5.32 0.06 -9.93 16 6 C -0.16 -2.34 5.35 -104.83 -0.56 -2.90 16 7 C 0.18 2.25 8.61 -17.09 -0.15 2.10 16 8 N -0.46 -6.43 10.39 -12.29 -0.13 -6.56 16 9 C 0.26 3.78 7.60 -157.60 -1.20 2.58 16 10 N -0.42 -5.28 10.55 -12.39 -0.13 -5.41 16 11 C 0.11 0.88 11.21 -17.19 -0.19 0.68 16 12 C 0.07 0.60 11.22 -17.21 -0.19 0.41 16 13 N -0.40 -5.23 10.46 -10.77 -0.11 -5.34 16 14 C 0.03 0.38 6.59 -84.78 -0.56 -0.18 16 15 C 0.03 0.41 9.79 -38.38 -0.38 0.03 16 16 C 0.13 2.22 3.43 -66.09 -0.23 1.99 16 17 H 0.09 1.20 5.97 -51.93 -0.31 0.89 16 18 C -0.16 -3.04 6.74 -24.58 -0.17 -3.20 16 19 C 0.16 4.03 4.97 -2.53 -0.01 4.02 16 20 N -0.58 -15.22 2.16 -170.07 -0.37 -15.59 16 21 C -0.20 -5.84 10.27 -15.06 -0.15 -5.99 16 22 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.01 -0.44 5.49 -17.43 -0.10 -0.53 16 24 N -0.92 -28.11 10.09 55.49 0.56 -27.55 16 25 Si 0.91 23.27 29.55 -169.99 -5.02 18.25 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 C 0.14 3.02 5.95 -3.06 -0.02 3.00 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.57 6.36 -51.93 -0.33 0.24 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.85 3.08 -51.95 -0.16 0.69 16 35 H 0.19 1.77 6.15 -52.49 -0.32 1.44 16 36 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.16 2.68 8.06 -52.49 -0.42 2.26 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.10 2.77 5.87 -51.93 -0.30 2.46 16 42 H 0.02 0.54 6.02 -51.93 -0.31 0.22 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.03 0.58 6.74 -51.93 -0.35 0.23 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -37.48 356.46 -9.31 -46.79 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.44 Total: -1.70 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -3.64 Total: 11.00 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.63 Total: -69.78 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.06 Total: -9.93 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.48 -9.31 -46.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033861091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.323 kcal (2) G-P(sol) polarization free energy of solvation -37.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds