Wall clock time and date at job start Wed Apr 1 2020 01:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46914 * 2 1 4 4 C 1.34776 * 119.99882 * 131.56733 * 3 2 1 5 5 O 1.21556 * 119.99747 * 183.22044 * 4 3 2 6 6 C 1.47839 * 120.00182 * 3.22233 * 4 3 2 7 7 C 1.40597 * 120.27797 * 316.41352 * 6 4 3 8 8 N 1.30819 * 121.52049 * 179.69953 * 7 6 4 9 9 C 1.33758 * 121.79950 * 0.27874 * 8 7 6 10 10 N 1.33885 * 120.62392 * 180.02562 * 9 8 7 11 11 C 1.31338 * 119.85069 * 179.97438 * 10 9 8 12 12 C 1.39761 * 120.77131 * 359.97438 * 11 10 9 13 13 N 1.31309 * 120.55745 * 359.97438 * 12 11 10 14 14 C 1.33669 * 119.70425 * 0.04200 * 13 12 11 15 15 C 1.38912 * 120.28228 * 136.69185 * 6 4 3 16 16 C 1.46498 * 119.99635 * 311.56524 * 3 2 1 17 17 H 1.08998 * 110.64432 * 20.60603 * 16 3 2 18 18 C 1.55160 * 110.71947 * 257.26510 * 16 3 2 19 19 C 1.54911 * 101.58069 * 277.14008 * 18 16 3 20 20 N 1.47421 * 104.83601 * 322.99025 * 19 18 16 21 21 C 1.36931 * 125.64905 * 204.16301 * 20 19 18 22 22 H 1.08001 * 119.99923 * 179.97438 * 21 20 19 23 23 C 1.38810 * 120.00095 * 359.95946 * 21 20 19 24 24 N 1.31619 * 120.00043 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00066 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47514 * 59.99876 * 25 23 21 27 27 H 1.48498 * 109.47196 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47077 * 299.99946 * 25 23 21 29 29 C 1.47026 * 108.70115 * 24.13021 * 20 19 18 30 30 H 1.09003 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47060 * 299.99736 * 1 2 3 32 32 H 1.08996 * 109.47056 * 60.00432 * 1 2 3 33 33 H 1.08998 * 109.47289 * 239.99620 * 2 1 3 34 34 H 1.09002 * 109.46700 * 119.99794 * 2 1 3 35 35 H 1.07999 * 119.23967 * 359.97438 * 7 6 4 36 36 H 1.07993 * 119.61282 * 179.97438 * 11 10 9 37 37 H 1.07998 * 119.72156 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.99736 * 359.97438 * 15 6 4 39 39 H 1.08991 * 111.00455 * 35.21924 * 18 16 3 40 40 H 1.08995 * 111.00283 * 159.06922 * 18 16 3 41 41 H 1.08999 * 110.36246 * 204.14996 * 19 18 16 42 42 H 1.09002 * 110.45504 * 81.87962 * 19 18 16 43 43 H 0.97004 * 120.00103 * 180.02562 * 24 23 21 44 44 H 1.08996 * 109.87828 * 239.52219 * 29 20 19 45 45 H 1.09000 * 109.88368 * 118.35627 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.9731 1.7584 0.8733 5 8 3.3366 2.9177 0.9131 6 6 3.5784 0.7623 1.7827 7 6 2.7687 -0.1769 2.4452 8 7 3.2790 -1.0726 3.2506 9 6 4.5935 -1.1383 3.4895 10 7 5.0907 -2.0652 4.3178 11 6 6.3839 -2.1162 4.5411 12 6 7.2525 -1.2125 3.9228 13 7 6.7900 -0.2947 3.1055 14 6 5.4773 -0.2239 2.8637 15 6 4.9512 0.7501 1.9943 16 6 1.4688 2.3523 -0.9493 17 1 0.4973 2.0226 -1.3173 18 6 2.4538 2.5891 -2.1245 19 6 3.4214 3.6334 -1.5138 20 7 2.5655 4.5013 -0.6845 21 6 2.8449 5.7942 -0.3305 22 1 2.1498 6.3483 0.2828 23 6 4.0217 6.3924 -0.7595 24 7 4.8687 5.7171 -1.5071 25 14 4.4032 8.1559 -0.2759 26 1 4.4663 8.2609 1.2041 27 1 5.7095 8.5571 -0.8573 28 1 3.3368 9.0521 -0.7906 29 6 1.3619 3.7489 -0.3013 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.7012 -0.1613 2.2822 36 1 6.7808 -2.8652 5.2103 37 1 8.3131 -1.2701 4.1183 38 1 5.5963 1.4624 1.5016 39 1 2.9819 1.6712 -2.3826 40 1 1.9357 2.9971 -2.9923 41 1 3.8996 4.2142 -2.3025 42 1 4.1733 3.1411 -0.8970 43 1 5.6913 6.1351 -1.8066 44 1 0.4723 4.2607 -0.6683 45 1 1.3152 3.6516 0.7834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033861091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:34 Heat of formation + Delta-G solvation = 110.373108 kcal Electronic energy + Delta-G solvation = -30409.173433 eV Core-core repulsion = 26429.339977 eV Total energy + Delta-G solvation = -3979.833456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.91923 -41.63898 -39.52062 -37.99276 -36.89267 -36.15365 -34.26082 -33.13993 -32.36178 -31.43998 -30.63361 -29.08605 -27.35120 -26.41383 -26.20019 -24.23472 -23.93762 -22.99488 -21.97170 -21.08447 -19.98436 -19.13683 -18.92433 -18.52349 -17.84082 -17.08833 -16.77338 -16.70460 -16.51592 -16.28023 -15.77426 -15.62266 -15.42752 -15.00647 -14.70985 -14.50388 -14.04854 -13.97791 -13.83875 -13.54416 -13.38639 -13.20507 -13.06621 -12.87600 -12.84872 -12.80505 -12.60695 -12.42570 -12.06698 -12.02731 -11.81021 -11.72166 -11.62720 -11.32242 -10.76414 -10.62417 -10.50285 -10.20598 -9.93000 -9.48618 -8.65198 -7.64954 -5.02323 -1.23038 -0.94349 0.55626 1.27080 1.42108 1.46746 1.52173 1.75060 2.02604 2.35242 2.55270 2.77392 2.80226 2.89742 3.26697 3.36332 3.42615 3.55154 3.74058 3.84965 3.90086 3.95550 3.98708 4.16839 4.28812 4.30813 4.34867 4.36445 4.55714 4.59973 4.72924 4.75112 4.83200 4.95935 5.02206 5.06843 5.14858 5.19053 5.21548 5.46197 5.50797 5.75781 5.77598 5.83848 5.93837 6.29404 6.41778 6.43506 6.67130 7.23029 7.28855 7.96263 8.60624 9.36831 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003843 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.830282 B = 7284.064664 C = 9045.168588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.077 3.923 3 N -0.593 5.593 4 C 0.531 3.469 5 O -0.501 6.501 6 C -0.164 4.164 7 C 0.190 3.810 8 N -0.467 5.467 9 C 0.250 3.750 10 N -0.448 5.448 11 C 0.132 3.868 12 C 0.091 3.909 13 N -0.445 5.445 14 C 0.010 3.990 15 C 0.010 3.990 16 C 0.148 3.852 17 H 0.139 0.861 18 C -0.146 4.146 19 C 0.167 3.833 20 N -0.594 5.594 21 C -0.214 4.214 22 H 0.068 0.932 23 C -0.074 4.074 24 N -0.950 5.950 25 Si 0.971 3.029 26 H -0.290 1.290 27 H -0.294 1.294 28 H -0.274 1.274 29 C 0.136 3.864 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.216 0.784 36 H 0.240 0.760 37 H 0.232 0.768 38 H 0.136 0.864 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.056 0.944 42 H -0.015 1.015 43 H 0.239 0.761 44 H 0.031 0.969 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -22.761 7.770 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.044 4.044 3 N -0.327 5.327 4 C 0.316 3.684 5 O -0.375 6.375 6 C -0.171 4.171 7 C 0.014 3.986 8 N -0.176 5.176 9 C 0.011 3.989 10 N -0.163 5.163 11 C -0.048 4.048 12 C -0.087 4.087 13 N -0.160 5.160 14 C -0.114 4.114 15 C -0.018 4.018 16 C 0.045 3.955 17 H 0.156 0.844 18 C -0.186 4.186 19 C 0.042 3.958 20 N -0.319 5.319 21 C -0.344 4.344 22 H 0.086 0.914 23 C -0.265 4.265 24 N -0.601 5.601 25 Si 0.801 3.199 26 H -0.217 1.217 27 H -0.220 1.220 28 H -0.200 1.200 29 C 0.010 3.990 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.232 0.768 36 H 0.256 0.744 37 H 0.248 0.752 38 H 0.153 0.847 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.003 0.997 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.468 -22.514 8.108 24.179 hybrid contribution 1.370 2.039 -0.172 2.462 sum -2.099 -20.475 7.936 22.059 Atomic orbital electron populations 1.22143 0.92632 1.04272 1.03239 1.22426 0.97089 0.80613 1.04312 1.47838 1.38445 1.12053 1.34396 1.18363 0.80743 0.87600 0.81717 1.91257 1.60014 1.18933 1.67268 1.21202 0.94647 0.99351 1.01895 1.23809 1.01779 0.85939 0.87073 1.67563 1.11461 1.23044 1.15581 1.20241 0.90800 0.92889 0.94932 1.68428 1.16446 1.18969 1.12496 1.25310 0.87165 0.97277 0.95074 1.25201 1.04849 0.88790 0.89814 1.68672 1.11899 1.21405 1.13984 1.20095 0.92321 0.98449 1.00534 1.21643 0.94410 0.93752 0.91952 1.22076 0.97709 0.87415 0.88270 0.84402 1.23337 0.98419 0.99179 0.97642 1.21578 0.91334 0.90045 0.92843 1.44351 1.19556 1.09411 1.58561 1.19282 1.02622 0.88026 1.24481 0.91391 1.25447 0.97124 1.02033 1.01898 1.70099 1.11595 1.36452 1.41980 0.85243 0.76911 0.80586 0.77178 1.21660 1.22033 1.19991 1.21525 0.89638 0.91366 0.96433 0.88647 0.91966 0.91334 0.90302 0.88405 0.76839 0.74400 0.75191 0.84653 0.90661 0.90172 0.92635 0.99691 0.95144 0.95153 0.97189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.68 71.98 0.70 -1.34 16 2 C 0.08 1.36 5.98 86.38 0.52 1.88 16 3 N -0.59 -17.07 2.75 -794.61 -2.19 -19.26 16 4 C 0.53 19.50 6.34 86.78 0.55 20.05 16 5 O -0.50 -25.08 10.61 -3.89 -0.04 -25.12 16 6 C -0.16 -5.07 5.35 -20.00 -0.11 -5.18 16 7 C 0.19 4.65 8.61 85.42 0.74 5.38 16 8 N -0.47 -12.74 10.39 -192.79 -2.00 -14.75 16 9 C 0.25 7.00 7.60 134.96 1.03 8.02 16 10 N -0.45 -10.27 10.55 -193.11 -2.04 -12.30 16 11 C 0.13 1.64 11.21 85.14 0.95 2.59 16 12 C 0.09 1.26 11.22 85.14 0.96 2.22 16 13 N -0.44 -11.38 10.46 -187.98 -1.97 -13.35 16 14 C 0.01 0.31 6.59 40.34 0.27 0.57 16 15 C 0.01 0.34 9.79 23.05 0.23 0.57 16 16 C 0.15 4.75 3.43 46.18 0.16 4.91 16 17 H 0.14 3.16 5.97 -2.39 -0.01 3.15 16 18 C -0.15 -5.47 6.74 31.99 0.22 -5.26 16 19 C 0.17 8.85 4.97 86.86 0.43 9.28 16 20 N -0.59 -32.77 2.16 -691.99 -1.50 -34.27 16 21 C -0.21 -13.09 10.27 84.03 0.86 -12.23 16 22 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 23 C -0.07 -4.54 5.49 84.86 0.47 -4.07 16 24 N -0.95 -61.26 10.09 21.65 0.22 -61.04 16 25 Si 0.97 49.82 29.55 68.60 2.03 51.85 16 26 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 27 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 28 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 29 C 0.14 5.90 5.95 86.73 0.52 6.42 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 0.84 6.36 -2.39 -0.02 0.83 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.63 3.08 -2.41 -0.01 1.62 16 35 H 0.22 3.70 6.15 -2.91 -0.02 3.68 16 36 H 0.24 0.10 8.06 -2.91 -0.02 0.08 16 37 H 0.23 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.14 5.14 8.06 -2.91 -0.02 5.12 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.06 3.39 5.87 -2.39 -0.01 3.37 16 42 H -0.01 -0.87 6.02 -2.39 -0.01 -0.88 16 43 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.01 0.47 6.74 -2.39 -0.02 0.46 16 Total: -1.00 -91.65 356.46 2.02 -89.62 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.04 Total: 4.79 kcal Atomic # 6 Polarization: 25.35 SS G_CDS: 8.47 Total: 33.82 kcal Atomic # 7 Polarization: -145.49 SS G_CDS: -9.47 Total: -154.96 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.04 Total: -25.12 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.03 Total: 51.85 kcal Total: -91.65 2.02 -89.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033861091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.997 kcal (2) G-P(sol) polarization free energy of solvation -91.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds