Wall clock time and date at job start Wed Apr 1 2020 01:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47052 * 2 1 4 4 C 1.34769 * 119.99703 * 97.45810 * 3 2 1 5 5 O 1.21559 * 119.99923 * 185.76061 * 4 3 2 6 6 C 1.47846 * 120.00431 * 5.76710 * 4 3 2 7 7 C 1.40601 * 120.28304 * 134.56056 * 6 4 3 8 8 N 1.30814 * 121.52044 * 179.97438 * 7 6 4 9 9 C 1.33749 * 121.80076 * 0.02562 * 8 7 6 10 10 N 1.33891 * 120.62524 * 180.02562 * 9 8 7 11 11 C 1.31331 * 119.84792 * 179.97438 * 10 9 8 12 12 C 1.39756 * 120.77956 * 0.25515 * 11 10 9 13 13 N 1.31311 * 120.55089 * 359.44158 * 12 11 10 14 14 C 1.33663 * 119.70303 * 0.57831 * 13 12 11 15 15 C 1.38902 * 120.27746 * 314.54542 * 6 4 3 16 16 C 1.46495 * 119.99974 * 277.46177 * 3 2 1 17 17 H 1.09001 * 110.88725 * 356.11383 * 16 3 2 18 18 C 1.55155 * 111.00686 * 120.00282 * 16 3 2 19 19 C 1.54325 * 102.94806 * 153.57491 * 18 16 3 20 20 N 1.47027 * 107.26434 * 337.80460 * 19 18 16 21 21 C 1.36936 * 125.64059 * 178.98670 * 20 19 18 22 22 H 1.08001 * 119.99794 * 179.97438 * 21 20 19 23 23 C 1.38806 * 120.00589 * 359.97389 * 21 20 19 24 24 N 1.31626 * 119.99957 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00440 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47283 * 89.99838 * 25 23 21 27 27 H 1.48497 * 109.47179 * 210.00356 * 25 23 21 28 28 H 1.48506 * 109.46923 * 330.00160 * 25 23 21 29 29 C 1.47413 * 108.70729 * 358.94143 * 20 19 18 30 30 H 1.08992 * 109.47211 * 69.02994 * 1 2 3 31 31 H 1.08999 * 109.46899 * 189.03011 * 1 2 3 32 32 H 1.09000 * 109.47019 * 309.02346 * 1 2 3 33 33 H 1.09007 * 109.47001 * 240.00361 * 2 1 3 34 34 H 1.09002 * 109.47410 * 120.00593 * 2 1 3 35 35 H 1.07998 * 119.23487 * 359.97438 * 7 6 4 36 36 H 1.08003 * 119.60915 * 179.97438 * 11 10 9 37 37 H 1.08002 * 119.72389 * 179.74089 * 12 11 10 38 38 H 1.08001 * 120.99981 * 359.97438 * 15 6 4 39 39 H 1.09003 * 110.71695 * 271.93570 * 18 16 3 40 40 H 1.09003 * 110.72045 * 35.20373 * 18 16 3 41 41 H 1.08999 * 109.88105 * 97.22053 * 19 18 16 42 42 H 1.08998 * 109.87995 * 218.38840 * 19 18 16 43 43 H 0.96995 * 119.99762 * 180.02562 * 24 23 21 44 44 H 1.09001 * 110.37327 * 265.29092 * 29 20 19 45 45 H 1.09005 * 110.36764 * 142.96398 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3858 1.9660 1.1573 5 8 2.6910 3.1425 1.1737 6 6 2.4178 1.1766 2.4070 7 6 3.5151 1.2759 3.2804 8 7 3.5684 0.5891 4.3924 9 6 2.5851 -0.2415 4.7556 10 7 2.6638 -0.9329 5.8996 11 6 1.6892 -1.7439 6.2416 12 6 0.5680 -1.9003 5.4219 13 7 0.4641 -1.2293 4.2980 14 6 1.4442 -0.3986 3.9295 15 6 1.3639 0.3307 2.7282 16 6 2.1072 2.1267 -1.2579 17 1 1.8398 1.4941 -2.1043 18 6 1.2217 3.4000 -1.2136 19 6 1.9227 4.3437 -2.2135 20 7 3.3168 3.8927 -2.3352 21 6 4.2696 4.4547 -3.1424 22 1 5.2701 4.0483 -3.1603 23 6 3.9497 5.5465 -3.9375 24 7 2.7305 6.0421 -3.9153 25 14 5.2497 6.3134 -5.0381 26 1 5.2252 5.6526 -6.3677 27 1 4.9687 7.7626 -5.2002 28 1 6.5886 6.1348 -4.4211 29 6 3.5192 2.7363 -1.4436 30 1 -0.3633 0.3678 -0.9595 31 1 -0.3633 -1.0149 0.1613 32 1 -0.3633 0.6471 0.7984 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.3328 1.9345 3.0273 36 1 1.7569 -2.3000 7.1650 37 1 -0.2216 -2.5751 5.7178 38 1 0.5084 0.2356 2.0760 39 1 0.2068 3.1756 -1.5418 40 1 1.2178 3.8324 -0.2130 41 1 1.4291 4.2885 -3.1837 42 1 1.8953 5.3670 -1.8390 43 1 2.5069 6.8048 -4.4713 44 1 3.9206 3.0626 -0.4842 45 1 4.1872 2.0112 -1.9086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033861092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:39 Heat of formation + Delta-G solvation = 108.062418 kcal Electronic energy + Delta-G solvation = -29666.869258 eV Core-core repulsion = 25686.935603 eV Total energy + Delta-G solvation = -3979.933655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.14236 -40.47092 -38.49685 -36.80445 -36.05340 -35.25861 -32.81205 -31.94202 -31.52958 -30.55261 -29.04518 -27.34134 -26.36067 -25.46297 -24.38364 -23.62041 -23.26799 -21.69814 -20.38610 -20.04418 -19.07103 -18.26839 -17.79075 -16.96797 -16.82414 -16.17668 -15.82427 -15.66010 -15.32180 -14.93975 -14.62342 -14.49165 -14.35561 -13.85231 -13.33981 -13.25131 -13.07891 -12.99748 -12.91829 -12.37034 -12.22555 -12.19199 -12.10132 -11.93241 -11.73227 -11.43367 -11.09518 -10.88038 -10.86014 -10.71760 -10.42741 -10.06583 -9.96097 -9.68192 -9.62726 -9.57116 -9.40255 -9.09820 -8.62321 -8.44278 -6.73762 -5.64909 -2.97774 -0.50416 -0.15904 1.32021 2.06644 2.69564 2.86898 3.11094 3.43817 3.44481 3.49031 3.51289 3.58465 3.59817 4.11625 4.17233 4.23411 4.44335 4.56020 4.63593 4.66889 4.80852 4.89979 4.98807 5.12668 5.35356 5.42198 5.45064 5.45977 5.48185 5.51932 5.61726 5.77884 5.85508 5.92907 5.97235 6.15270 6.46308 6.48692 6.56900 6.60471 6.70751 6.97964 7.12342 7.38858 7.50396 7.62165 7.72256 7.89098 8.12993 8.32360 9.28225 9.88501 10.54768 11.46808 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025534 B = 0.002559 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.326211 B =10940.992331 C =11599.725565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.556 3.444 5 O -0.494 6.494 6 C -0.159 4.159 7 C 0.211 3.789 8 N -0.456 5.456 9 C 0.268 3.732 10 N -0.418 5.418 11 C 0.109 3.891 12 C 0.071 3.929 13 N -0.407 5.407 14 C 0.020 3.980 15 C -0.010 4.010 16 C 0.131 3.869 17 H 0.095 0.905 18 C -0.154 4.154 19 C 0.185 3.815 20 N -0.601 5.601 21 C -0.224 4.224 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.126 3.874 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.184 0.816 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.171 0.829 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.251 0.749 44 H 0.043 0.957 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 -20.234 17.081 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.031 4.031 3 N -0.325 5.325 4 C 0.341 3.659 5 O -0.368 6.368 6 C -0.167 4.167 7 C 0.034 3.966 8 N -0.165 5.165 9 C 0.029 3.971 10 N -0.132 5.132 11 C -0.070 4.070 12 C -0.106 4.106 13 N -0.121 5.121 14 C -0.106 4.106 15 C -0.038 4.038 16 C 0.028 3.972 17 H 0.113 0.887 18 C -0.193 4.193 19 C 0.059 3.941 20 N -0.328 5.328 21 C -0.352 4.352 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.743 3.257 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.001 4.001 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.201 0.799 36 H 0.201 0.799 37 H 0.200 0.800 38 H 0.187 0.813 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.917 -19.218 17.386 26.823 hybrid contribution -0.226 0.184 -1.037 1.078 sum -7.142 -19.034 16.348 26.088 Atomic orbital electron populations 1.22369 0.95557 1.02399 1.03284 1.21857 0.94726 0.82897 1.03639 1.47917 1.63720 1.13725 1.07112 1.17877 0.78670 0.86845 0.82479 1.90910 1.46476 1.14462 1.84997 1.21385 0.97212 0.99406 0.98696 1.23335 0.95648 0.91784 0.85788 1.67583 1.26307 1.06157 1.16442 1.20134 0.90454 0.94829 0.91722 1.68338 1.27136 1.04296 1.13457 1.24322 0.89113 0.93447 1.00144 1.24218 0.98566 0.97279 0.90510 1.68594 1.25258 1.03182 1.15081 1.20171 0.93741 0.99267 0.97435 1.22437 0.98548 0.89404 0.93363 1.22502 0.99118 0.92774 0.82779 0.88658 1.23273 0.97572 0.96121 1.02377 1.21067 0.83492 0.94663 0.94829 1.44310 1.08432 1.32348 1.47685 1.19039 0.91012 1.09628 1.15538 0.90512 1.24794 0.96855 0.98592 1.00335 1.69970 1.17712 1.26389 1.42959 0.86113 0.80638 0.78485 0.80491 1.21694 1.21710 1.20724 1.21852 0.92738 0.90194 0.95303 0.91105 0.91064 0.92014 0.89694 0.90365 0.79877 0.79926 0.80021 0.81254 0.92613 0.90554 0.93724 0.93865 0.93825 0.93921 0.94794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.15 37.16 0.34 -1.10 16 2 C 0.09 0.87 5.56 -4.04 -0.02 0.85 16 3 N -0.59 -8.07 2.57 -164.77 -0.42 -8.49 16 4 C 0.56 8.29 6.55 -12.33 -0.08 8.20 16 5 O -0.49 -9.46 13.06 5.31 0.07 -9.39 16 6 C -0.16 -1.95 5.10 -104.83 -0.53 -2.48 16 7 C 0.21 2.60 10.83 -17.09 -0.19 2.42 16 8 N -0.46 -6.14 10.39 -12.28 -0.13 -6.27 16 9 C 0.27 3.37 7.60 -157.61 -1.20 2.17 16 10 N -0.42 -4.64 10.55 -12.39 -0.13 -4.77 16 11 C 0.11 0.69 11.21 -17.20 -0.19 0.50 16 12 C 0.07 0.41 11.22 -17.21 -0.19 0.22 16 13 N -0.41 -3.75 10.46 -10.77 -0.11 -3.87 16 14 C 0.02 0.22 6.59 -84.78 -0.56 -0.34 16 15 C -0.01 -0.11 7.50 -38.38 -0.29 -0.40 16 16 C 0.13 2.25 3.55 -65.78 -0.23 2.02 16 17 H 0.10 1.51 7.96 -51.93 -0.41 1.09 16 18 C -0.15 -3.00 6.32 -24.90 -0.16 -3.16 16 19 C 0.18 4.63 5.37 -3.06 -0.02 4.61 16 20 N -0.60 -15.81 3.39 -170.07 -0.58 -16.39 16 21 C -0.22 -6.39 10.28 -15.06 -0.15 -6.55 16 22 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -27.67 10.31 55.49 0.57 -27.10 16 25 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 C 0.13 2.70 6.58 -2.53 -0.02 2.69 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 6.33 -51.93 -0.33 0.20 16 33 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.08 0.68 5.09 -51.93 -0.26 0.41 16 35 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.18 0.32 8.06 -52.48 -0.42 -0.10 16 37 H 0.18 0.24 8.06 -52.49 -0.42 -0.18 16 38 H 0.17 1.56 3.75 -52.49 -0.20 1.36 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.57 6.06 -51.93 -0.31 1.26 16 41 H 0.04 1.21 7.38 -51.93 -0.38 0.82 16 42 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 44 H 0.04 0.98 5.74 -51.93 -0.30 0.68 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -36.57 361.29 -9.41 -45.98 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.51 Total: -1.94 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -3.59 Total: 9.27 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -0.80 Total: -66.89 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.57 -9.41 -45.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033861092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.045 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds