Wall clock time and date at job start Wed Apr 1 2020 01:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47052 * 2 1 4 4 C 1.34769 * 119.99703 * 97.45810 * 3 2 1 5 5 O 1.21559 * 119.99923 * 185.76061 * 4 3 2 6 6 C 1.47846 * 120.00431 * 5.76710 * 4 3 2 7 7 C 1.40601 * 120.28304 * 134.56056 * 6 4 3 8 8 N 1.30814 * 121.52044 * 179.97438 * 7 6 4 9 9 C 1.33749 * 121.80076 * 0.02562 * 8 7 6 10 10 N 1.33891 * 120.62524 * 180.02562 * 9 8 7 11 11 C 1.31331 * 119.84792 * 179.97438 * 10 9 8 12 12 C 1.39756 * 120.77956 * 0.25515 * 11 10 9 13 13 N 1.31311 * 120.55089 * 359.44158 * 12 11 10 14 14 C 1.33663 * 119.70303 * 0.57831 * 13 12 11 15 15 C 1.38902 * 120.27746 * 314.54542 * 6 4 3 16 16 C 1.46495 * 119.99974 * 277.46177 * 3 2 1 17 17 H 1.09001 * 110.88725 * 356.11383 * 16 3 2 18 18 C 1.55155 * 111.00686 * 120.00282 * 16 3 2 19 19 C 1.54325 * 102.94806 * 153.57491 * 18 16 3 20 20 N 1.47027 * 107.26434 * 337.80460 * 19 18 16 21 21 C 1.36936 * 125.64059 * 178.98670 * 20 19 18 22 22 H 1.08001 * 119.99794 * 179.97438 * 21 20 19 23 23 C 1.38806 * 120.00589 * 359.97389 * 21 20 19 24 24 N 1.31626 * 119.99957 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00440 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47283 * 89.99838 * 25 23 21 27 27 H 1.48497 * 109.47179 * 210.00356 * 25 23 21 28 28 H 1.48506 * 109.46923 * 330.00160 * 25 23 21 29 29 C 1.47413 * 108.70729 * 358.94143 * 20 19 18 30 30 H 1.08992 * 109.47211 * 69.02994 * 1 2 3 31 31 H 1.08999 * 109.46899 * 189.03011 * 1 2 3 32 32 H 1.09000 * 109.47019 * 309.02346 * 1 2 3 33 33 H 1.09007 * 109.47001 * 240.00361 * 2 1 3 34 34 H 1.09002 * 109.47410 * 120.00593 * 2 1 3 35 35 H 1.07998 * 119.23487 * 359.97438 * 7 6 4 36 36 H 1.08003 * 119.60915 * 179.97438 * 11 10 9 37 37 H 1.08002 * 119.72389 * 179.74089 * 12 11 10 38 38 H 1.08001 * 120.99981 * 359.97438 * 15 6 4 39 39 H 1.09003 * 110.71695 * 271.93570 * 18 16 3 40 40 H 1.09003 * 110.72045 * 35.20373 * 18 16 3 41 41 H 1.08999 * 109.88105 * 97.22053 * 19 18 16 42 42 H 1.08998 * 109.87995 * 218.38840 * 19 18 16 43 43 H 0.96995 * 119.99762 * 180.02562 * 24 23 21 44 44 H 1.09001 * 110.37327 * 265.29092 * 29 20 19 45 45 H 1.09005 * 110.36764 * 142.96398 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3858 1.9660 1.1573 5 8 2.6910 3.1425 1.1737 6 6 2.4178 1.1766 2.4070 7 6 3.5151 1.2759 3.2804 8 7 3.5684 0.5891 4.3924 9 6 2.5851 -0.2415 4.7556 10 7 2.6638 -0.9329 5.8996 11 6 1.6892 -1.7439 6.2416 12 6 0.5680 -1.9003 5.4219 13 7 0.4641 -1.2293 4.2980 14 6 1.4442 -0.3986 3.9295 15 6 1.3639 0.3307 2.7282 16 6 2.1072 2.1267 -1.2579 17 1 1.8398 1.4941 -2.1043 18 6 1.2217 3.4000 -1.2136 19 6 1.9227 4.3437 -2.2135 20 7 3.3168 3.8927 -2.3352 21 6 4.2696 4.4547 -3.1424 22 1 5.2701 4.0483 -3.1603 23 6 3.9497 5.5465 -3.9375 24 7 2.7305 6.0421 -3.9153 25 14 5.2497 6.3134 -5.0381 26 1 5.2252 5.6526 -6.3677 27 1 4.9687 7.7626 -5.2002 28 1 6.5886 6.1348 -4.4211 29 6 3.5192 2.7363 -1.4436 30 1 -0.3633 0.3678 -0.9595 31 1 -0.3633 -1.0149 0.1613 32 1 -0.3633 0.6471 0.7984 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.3328 1.9345 3.0273 36 1 1.7569 -2.3000 7.1650 37 1 -0.2216 -2.5751 5.7178 38 1 0.5084 0.2356 2.0760 39 1 0.2068 3.1756 -1.5418 40 1 1.2178 3.8324 -0.2130 41 1 1.4291 4.2885 -3.1837 42 1 1.8953 5.3670 -1.8390 43 1 2.5069 6.8048 -4.4713 44 1 3.9206 3.0626 -0.4842 45 1 4.1872 2.0112 -1.9086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033861092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:38 Heat of formation + Delta-G solvation = 81.830519 kcal Electronic energy + Delta-G solvation = -29668.006759 eV Core-core repulsion = 25686.935603 eV Total energy + Delta-G solvation = -3981.071156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.90522 -41.58820 -39.45727 -38.36292 -37.17051 -36.08677 -34.46489 -33.10435 -32.30770 -31.69506 -30.82172 -28.91139 -27.19730 -26.65276 -25.97536 -24.47540 -24.05658 -22.95058 -22.00494 -21.44429 -19.97065 -19.21914 -18.84063 -18.63414 -17.87917 -17.24062 -16.77357 -16.59514 -16.53511 -16.11391 -16.04919 -15.77051 -15.30180 -15.28149 -14.60086 -14.41905 -14.16996 -13.96504 -13.92331 -13.81627 -13.63211 -13.43049 -13.08208 -12.92638 -12.85236 -12.77013 -12.70836 -12.28857 -12.24889 -12.06972 -12.03187 -11.83512 -11.82137 -11.58231 -10.82073 -10.70308 -10.46132 -10.31151 -9.89246 -9.77231 -8.86349 -7.84466 -5.20315 -1.22271 -0.89676 0.57417 1.23234 1.44577 1.47725 1.55958 1.62568 1.84876 2.39733 2.50288 2.74253 2.83959 2.87792 3.26872 3.34462 3.39330 3.56206 3.69995 3.77801 3.89478 3.93299 3.98805 4.06753 4.18280 4.24992 4.30293 4.33533 4.43416 4.55223 4.62843 4.71953 4.80435 4.86170 4.88984 4.94959 5.02451 5.12372 5.26150 5.35520 5.43508 5.61561 5.67521 5.74955 5.81912 6.19280 6.26027 6.32856 6.74933 6.98258 7.09985 7.76787 8.41986 9.26057 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025534 B = 0.002559 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.326211 B =10940.992331 C =11599.725565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.087 3.913 3 N -0.586 5.586 4 C 0.559 3.441 5 O -0.547 6.547 6 C -0.171 4.171 7 C 0.201 3.799 8 N -0.482 5.482 9 C 0.246 3.754 10 N -0.461 5.461 11 C 0.131 3.869 12 C 0.094 3.906 13 N -0.424 5.424 14 C 0.008 3.992 15 C 0.008 3.992 16 C 0.154 3.846 17 H 0.121 0.879 18 C -0.138 4.138 19 C 0.194 3.806 20 N -0.622 5.622 21 C -0.241 4.241 22 H 0.081 0.919 23 C -0.068 4.068 24 N -0.952 5.952 25 Si 0.981 3.019 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.271 1.271 29 C 0.121 3.879 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.181 0.819 36 H 0.233 0.767 37 H 0.237 0.763 38 H 0.186 0.814 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.020 0.980 42 H -0.005 1.005 43 H 0.247 0.753 44 H 0.027 0.973 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.497 -24.274 18.515 31.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.034 4.034 3 N -0.317 5.317 4 C 0.346 3.654 5 O -0.425 6.425 6 C -0.178 4.178 7 C 0.025 3.975 8 N -0.191 5.191 9 C 0.008 3.992 10 N -0.176 5.176 11 C -0.049 4.049 12 C -0.084 4.084 13 N -0.139 5.139 14 C -0.116 4.116 15 C -0.019 4.019 16 C 0.049 3.951 17 H 0.139 0.861 18 C -0.177 4.177 19 C 0.069 3.931 20 N -0.349 5.349 21 C -0.370 4.370 22 H 0.099 0.901 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.809 3.191 26 H -0.207 1.207 27 H -0.222 1.222 28 H -0.196 1.196 29 C -0.005 4.005 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.198 0.802 36 H 0.250 0.750 37 H 0.253 0.747 38 H 0.203 0.797 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.013 0.987 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.494 -23.302 18.808 31.127 hybrid contribution 0.185 1.215 -1.207 1.723 sum -8.309 -22.087 17.600 29.439 Atomic orbital electron populations 1.22356 0.93982 1.03994 1.02934 1.22183 0.95923 0.80241 1.05067 1.47898 1.63334 1.15092 1.05401 1.18231 0.77376 0.86302 0.83448 1.90885 1.48823 1.16871 1.85944 1.20971 0.98372 1.00726 0.97718 1.23256 0.96038 0.92162 0.86017 1.67527 1.27637 1.07153 1.16827 1.20365 0.90827 0.95257 0.92780 1.68390 1.29602 1.06141 1.13494 1.25310 0.87541 0.90941 1.01106 1.25198 0.99070 0.95639 0.88523 1.68691 1.24565 1.03766 1.16858 1.20145 0.93976 1.00130 0.97361 1.22543 0.97905 0.88073 0.93403 1.22116 0.95225 0.92493 0.85228 0.86148 1.23047 0.98874 0.95947 0.99865 1.20783 0.83791 0.93776 0.94769 1.44615 1.08522 1.33830 1.47912 1.19446 0.91846 1.10006 1.15742 0.90119 1.25689 0.99044 0.99244 1.02104 1.70202 1.19586 1.26629 1.43727 0.85036 0.78335 0.76981 0.78712 1.20665 1.22157 1.19649 1.21963 0.95853 0.89116 0.93546 0.91403 0.88308 0.92567 0.87963 0.89286 0.80206 0.75039 0.74721 0.79706 0.89605 0.91876 0.96196 0.98693 0.94389 0.95554 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 9.15 71.98 0.66 -1.60 16 2 C 0.09 1.43 5.56 86.38 0.48 1.91 16 3 N -0.59 -15.49 2.57 -793.48 -2.04 -17.52 16 4 C 0.56 17.09 6.55 86.79 0.57 17.66 16 5 O -0.55 -22.24 13.06 -3.90 -0.05 -22.29 16 6 C -0.17 -4.25 5.10 -20.00 -0.10 -4.35 16 7 C 0.20 5.28 10.83 85.42 0.92 6.21 16 8 N -0.48 -13.46 10.39 -192.76 -2.00 -15.46 16 9 C 0.25 6.03 7.60 134.96 1.03 7.05 16 10 N -0.46 -9.36 10.55 -193.11 -2.04 -11.40 16 11 C 0.13 1.07 11.21 85.13 0.95 2.03 16 12 C 0.09 0.60 11.22 85.14 0.96 1.55 16 13 N -0.42 -6.30 10.46 -187.98 -1.97 -8.27 16 14 C 0.01 0.17 6.59 40.35 0.27 0.43 16 15 C 0.01 0.15 7.50 23.05 0.17 0.33 16 16 C 0.15 5.18 3.55 46.39 0.16 5.35 16 17 H 0.12 3.53 7.96 -2.39 -0.02 3.51 16 18 C -0.14 -5.47 6.32 31.78 0.20 -5.27 16 19 C 0.19 10.25 5.37 86.73 0.47 10.71 16 20 N -0.62 -34.02 3.39 -691.99 -2.35 -36.37 16 21 C -0.24 -14.23 10.28 84.03 0.86 -13.37 16 22 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 23 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 24 N -0.95 -59.62 10.31 21.65 0.22 -59.39 16 25 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 28 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 29 C 0.12 5.33 6.58 86.86 0.57 5.90 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.81 6.33 -2.39 -0.02 0.80 16 33 H 0.10 1.39 8.08 -2.38 -0.02 1.37 16 34 H 0.09 1.33 5.09 -2.39 -0.01 1.31 16 35 H 0.18 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.23 -0.61 8.06 -2.91 -0.02 -0.63 16 37 H 0.24 -1.10 8.06 -2.91 -0.02 -1.13 16 38 H 0.19 3.00 3.75 -2.91 -0.01 2.98 16 39 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.06 2.70 6.06 -2.39 -0.01 2.68 16 41 H 0.02 1.13 7.38 -2.39 -0.02 1.11 16 42 H -0.01 -0.32 7.50 -2.39 -0.02 -0.34 16 43 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.03 1.27 5.74 -2.39 -0.01 1.26 16 45 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -87.12 361.29 1.49 -85.63 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.04 Total: 4.62 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 8.64 Total: 30.96 kcal Atomic # 7 Polarization: -138.25 SS G_CDS: -10.17 Total: -148.42 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -87.12 1.49 -85.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033861092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.463 kcal (2) G-P(sol) polarization free energy of solvation -87.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds